AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 365
Pass (FILTER=PASS): 63 (17.3%)
Fail (FILTER=FAIL): 302 (82.7%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 12
All 12 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 62
confidence_below_min(medium<high): 58
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 24
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 19
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 16
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 12
confidence_below_min(low<high): 12
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 4
Breakdown by confidence:
high: 63 pass, 6 fail (total: 69)
low: 0 pass, 164 fail (total: 164)
medium: 0 pass, 132 fail (total: 132)
Arriba filter: 365 rows -> 63 PASS; wrote SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered.tsv and SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.arriba.fusions.filter_summary.txt