Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0dcc2fe0965778efed6fd15e9ee86e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0dcc2fe0965778efed6fd15e9ee86e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/67fdee3612a375e359e1a489a22e25/MCF7_FFPE_RNA_0001_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/67fdee3612a375e359e1a489a22e25/MCF7_FFPE_RNA_0001_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory