Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/e96b0edff037293dd66123093fc521/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/8eadecd22fbd1e2e1a2f97efa0369e/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/e96b0edff037293dd66123093fc521/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
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Processed 10000000 records
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Processed 18000000 records
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Processed 31000000 records
Processed 32000000 records
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Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
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Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
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Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
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Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
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Processed 159000000 records
Processed 160000000 records
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Processed 168000000 records
Processed 169000000 records
paired = 83854926
unpaired = 2108854
MERGED PAIRED END READS = 83854926
MATES PROCESSED = 169818706
TOTAL READS = 85963780
DISTINCT READS = 3.21944e+07
DISTINCT COUNTS = 564
MAX COUNT = 278600
COUNTS OF 1 = 1.7653e+07
MAX TERMS = 100
OBSERVED COUNTS (278601)
1 17653018
2 5243638
3 2689255
4 1794367
5 1268287
6 906432
7 646572
8 467721
9 339223
10 248641
11 185198
12 139804
13 107599
14 82919
15 65879
16 53208
17 42454
18 34781
19 29041
20 23876
21 20085
22 17140
23 14307
24 12427
25 10807
26 9272
27 7898
28 7042
29 6153
30 5410
31 4676
32 4234
33 3773
34 3221
35 3021
36 2653
37 2351
38 2215
39 1931
40 1803
41 1743
42 1507
43 1450
44 1264
45 1201
46 1139
47 1002
48 962
49 939
50 867
51 816
52 763
53 737
54 652
55 622
56 599
57 544
58 508
59 492
60 461
61 466
62 453
63 408
64 405
65 361
66 360
67 318
68 336
69 310
70 277
71 258
72 249
73 238
74 238
75 219
76 230
77 213
78 216
79 221
80 198
81 178
82 194
83 172
84 171
85 150
86 158
87 158
88 156
89 132
90 130
91 136
92 125
93 113
94 116
95 133
96 118
97 107
98 113
99 102
100 103
101 109
102 92
103 101
104 88
105 75
106 78
107 81
108 79
109 86
110 63
111 76
112 68
113 69
114 64
115 63
116 71
117 58
118 55
119 69
120 62
121 72
122 51
123 63
124 52
125 46
126 60
127 57
128 46
129 48
130 48
131 56
132 41
133 42
134 37
135 36
136 48
137 41
138 38
139 34
140 44
141 43
142 32
143 43
144 25
145 37
146 43
147 31
148 39
149 33
150 18
151 35
152 30
153 28
154 31
155 32
156 26
157 32
158 29
159 29
160 27
161 19
162 26
163 17
164 29
165 23
166 20
167 21
168 20
169 21
170 29
171 21
172 14
173 21
174 17
175 8
176 16
177 19
178 15
179 24
180 14
181 20
182 23
183 12
184 17
185 16
186 19
187 16
188 12
189 8
190 15
191 16
192 13
193 12
194 16
195 14
196 9
197 14
198 8
199 8
200 11
201 14
202 11
203 18
204 19
205 17
206 17
207 10
208 14
209 14
210 11
211 9
212 12
213 15
214 8
215 14
216 12
217 11
218 8
219 10
220 18
221 3
222 17
223 14
224 11
225 9
226 7
227 11
228 6
229 12
230 7
231 8
232 9
233 11
234 7
235 8
236 9
237 6
238 2
239 8
240 6
241 11
242 10
243 7
244 8
245 4
246 8
247 4
248 6
249 7
250 1
251 5
252 8
253 6
254 6
255 9
256 5
257 5
258 5
259 2
260 6
261 3
262 5
263 6
264 4
265 8
266 7
267 3
268 7
269 5
270 2
271 7
272 7
273 5
274 5
275 3
276 4
277 1
278 7
279 5
280 5
281 8
282 6
283 4
284 4
285 1
286 3
287 8
288 2
289 7
291 5
292 8
293 1
294 3
295 6
296 3
297 9
298 2
299 1
300 2
301 4
302 1
303 4
304 4
305 6
306 5
307 4
308 3
309 6
310 4
311 5
312 3
313 2
314 9
315 2
316 1
317 1
318 2
319 4
320 2
321 5
322 3
323 6
324 3
325 2
326 5
327 3
328 5
329 2
330 3
331 3
332 2
333 2
334 6
335 2
336 2
337 2
338 5
339 5
340 1
341 1
342 2
343 6
344 4
345 3
346 1
347 3
348 5
349 1
351 1
352 2
353 1
354 3
355 2
356 4
357 2
358 2
359 2
360 2
361 2
363 2
364 1
365 3
366 1
367 1
368 2
369 6
370 5
371 1
372 3
373 1
375 1
376 2
378 3
379 4
380 1
381 5
382 2
383 1
384 2
385 2
386 2
387 1
388 2
389 2
390 4
391 2
392 1
393 1
396 5
397 1
398 2
399 4
400 3
401 2
403 1
404 1
405 2
406 2
407 2
408 4
409 2
410 1
411 1
412 2
413 3
414 3
415 3
416 1
417 1
418 3
420 1
421 2
422 2
423 2
424 2
426 1
427 4
428 3
429 1
431 2
433 1
434 1
437 1
438 1
439 1
440 1
441 2
447 1
448 1
449 1
450 1
452 2
453 1
454 1
455 1
457 1
459 1
463 1
464 2
465 1
466 2
470 1
472 1
473 1
475 1
476 3
477 1
479 2
481 1
482 2
483 1
485 1
488 1
491 1
492 1
494 2
497 1
499 3
504 1
505 2
507 3
508 2
511 1
512 1
513 1
515 2
516 1
519 2
520 1
523 1
524 2
526 1
528 1
533 1
534 2
537 1
541 1
542 1
543 3
546 2
547 1
551 1
552 1
554 2
555 2
558 1
565 1
569 1
574 1
576 1
581 1
582 1
583 1
584 3
588 2
589 3
590 1
591 1
592 1
595 1
597 1
598 1
600 1
602 1
603 2
605 1
607 1
613 1
616 1
619 2
627 1
629 2
631 1
635 2
645 1
663 1
669 1
675 1
677 1
692 1
704 1
711 1
749 2
753 1
775 1
778 1
794 1
813 1
826 1
844 1
847 1
910 1
927 1
939 1
953 1
979 1
1002 1
1008 1
1042 2
1044 1
1106 1
1198 1
1219 1
1325 1
1391 1
1473 1
1563 1
1708 1
1916 1
2021 1
2066 1
2159 1
2199 1
2236 1
2311 1
2404 1
2468 1
3219 1
3733 1
4704 1
5440 1
7365 1
16151 1
278600 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_............................._........_............._.._......_....__..
_....................___............._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]