Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/e96b0edff037293dd66123093fc521/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/8eadecd22fbd1e2e1a2f97efa0369e/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/e96b0edff037293dd66123093fc521/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records paired = 83854926 unpaired = 2108854 MERGED PAIRED END READS = 83854926 MATES PROCESSED = 169818706 TOTAL READS = 85963780 DISTINCT READS = 3.21944e+07 DISTINCT COUNTS = 564 MAX COUNT = 278600 COUNTS OF 1 = 1.7653e+07 MAX TERMS = 100 OBSERVED COUNTS (278601) 1 17653018 2 5243638 3 2689255 4 1794367 5 1268287 6 906432 7 646572 8 467721 9 339223 10 248641 11 185198 12 139804 13 107599 14 82919 15 65879 16 53208 17 42454 18 34781 19 29041 20 23876 21 20085 22 17140 23 14307 24 12427 25 10807 26 9272 27 7898 28 7042 29 6153 30 5410 31 4676 32 4234 33 3773 34 3221 35 3021 36 2653 37 2351 38 2215 39 1931 40 1803 41 1743 42 1507 43 1450 44 1264 45 1201 46 1139 47 1002 48 962 49 939 50 867 51 816 52 763 53 737 54 652 55 622 56 599 57 544 58 508 59 492 60 461 61 466 62 453 63 408 64 405 65 361 66 360 67 318 68 336 69 310 70 277 71 258 72 249 73 238 74 238 75 219 76 230 77 213 78 216 79 221 80 198 81 178 82 194 83 172 84 171 85 150 86 158 87 158 88 156 89 132 90 130 91 136 92 125 93 113 94 116 95 133 96 118 97 107 98 113 99 102 100 103 101 109 102 92 103 101 104 88 105 75 106 78 107 81 108 79 109 86 110 63 111 76 112 68 113 69 114 64 115 63 116 71 117 58 118 55 119 69 120 62 121 72 122 51 123 63 124 52 125 46 126 60 127 57 128 46 129 48 130 48 131 56 132 41 133 42 134 37 135 36 136 48 137 41 138 38 139 34 140 44 141 43 142 32 143 43 144 25 145 37 146 43 147 31 148 39 149 33 150 18 151 35 152 30 153 28 154 31 155 32 156 26 157 32 158 29 159 29 160 27 161 19 162 26 163 17 164 29 165 23 166 20 167 21 168 20 169 21 170 29 171 21 172 14 173 21 174 17 175 8 176 16 177 19 178 15 179 24 180 14 181 20 182 23 183 12 184 17 185 16 186 19 187 16 188 12 189 8 190 15 191 16 192 13 193 12 194 16 195 14 196 9 197 14 198 8 199 8 200 11 201 14 202 11 203 18 204 19 205 17 206 17 207 10 208 14 209 14 210 11 211 9 212 12 213 15 214 8 215 14 216 12 217 11 218 8 219 10 220 18 221 3 222 17 223 14 224 11 225 9 226 7 227 11 228 6 229 12 230 7 231 8 232 9 233 11 234 7 235 8 236 9 237 6 238 2 239 8 240 6 241 11 242 10 243 7 244 8 245 4 246 8 247 4 248 6 249 7 250 1 251 5 252 8 253 6 254 6 255 9 256 5 257 5 258 5 259 2 260 6 261 3 262 5 263 6 264 4 265 8 266 7 267 3 268 7 269 5 270 2 271 7 272 7 273 5 274 5 275 3 276 4 277 1 278 7 279 5 280 5 281 8 282 6 283 4 284 4 285 1 286 3 287 8 288 2 289 7 291 5 292 8 293 1 294 3 295 6 296 3 297 9 298 2 299 1 300 2 301 4 302 1 303 4 304 4 305 6 306 5 307 4 308 3 309 6 310 4 311 5 312 3 313 2 314 9 315 2 316 1 317 1 318 2 319 4 320 2 321 5 322 3 323 6 324 3 325 2 326 5 327 3 328 5 329 2 330 3 331 3 332 2 333 2 334 6 335 2 336 2 337 2 338 5 339 5 340 1 341 1 342 2 343 6 344 4 345 3 346 1 347 3 348 5 349 1 351 1 352 2 353 1 354 3 355 2 356 4 357 2 358 2 359 2 360 2 361 2 363 2 364 1 365 3 366 1 367 1 368 2 369 6 370 5 371 1 372 3 373 1 375 1 376 2 378 3 379 4 380 1 381 5 382 2 383 1 384 2 385 2 386 2 387 1 388 2 389 2 390 4 391 2 392 1 393 1 396 5 397 1 398 2 399 4 400 3 401 2 403 1 404 1 405 2 406 2 407 2 408 4 409 2 410 1 411 1 412 2 413 3 414 3 415 3 416 1 417 1 418 3 420 1 421 2 422 2 423 2 424 2 426 1 427 4 428 3 429 1 431 2 433 1 434 1 437 1 438 1 439 1 440 1 441 2 447 1 448 1 449 1 450 1 452 2 453 1 454 1 455 1 457 1 459 1 463 1 464 2 465 1 466 2 470 1 472 1 473 1 475 1 476 3 477 1 479 2 481 1 482 2 483 1 485 1 488 1 491 1 492 1 494 2 497 1 499 3 504 1 505 2 507 3 508 2 511 1 512 1 513 1 515 2 516 1 519 2 520 1 523 1 524 2 526 1 528 1 533 1 534 2 537 1 541 1 542 1 543 3 546 2 547 1 551 1 552 1 554 2 555 2 558 1 565 1 569 1 574 1 576 1 581 1 582 1 583 1 584 3 588 2 589 3 590 1 591 1 592 1 595 1 597 1 598 1 600 1 602 1 603 2 605 1 607 1 613 1 616 1 619 2 627 1 629 2 631 1 635 2 645 1 663 1 669 1 675 1 677 1 692 1 704 1 711 1 749 2 753 1 775 1 778 1 794 1 813 1 826 1 844 1 847 1 910 1 927 1 939 1 953 1 979 1 1002 1 1008 1 1042 2 1044 1 1106 1 1198 1 1219 1 1325 1 1391 1 1473 1 1563 1 1708 1 1916 1 2021 1 2066 1 2159 1 2199 1 2236 1 2311 1 2404 1 2468 1 3219 1 3733 1 4704 1 5440 1 7365 1 16151 1 278600 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] _............................._........_............._.._......_....__.. _....................___............._... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]