Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/6536c8bb6092baf57c0e0fefb78c08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/6536c8bb6092baf57c0e0fefb78c08/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/620adc899791e590f3152bd5a9548f/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/620adc899791e590f3152bd5a9548f/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory