Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/7dbee5c6f334ab661e3c02c0267dc0/fi_workdir/Hs746T_FFPE_RNA_0001_23LG7FLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/5ea71a27992b9813e61dd7ee6b9311/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/5ea71a27992b9813e61dd7ee6b9311/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12629
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12629
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12629
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC002066.1--SYK HAVANA gene 14023 30380 . + . FI_gene_label "SYK^ENSG00000165025.15" ; ID "AC002066.1--SYK^SYK^ENSG00000165025.15" ; ccdsid "CCDS6688.1" ; exon_id "ENSE00001468302.1" ; exon_number 2 ; gene_id "AC002066.1--SYK^SYK^ENSG00000165025.15" ; gene_name SYK ; gene_type protein_coding ; havana_gene "OTTHUMG00000020200.2" ; havana_transcript "OTTHUMT00000053019.1" ; hgnc_id "HGNC:11491" ; level 2 ; orig_coord_info "chr9,90843899,90844315,+" ; protein_id "ENSP00000364898.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "AC002066.1--SYK^ENST00000375746.1" ; transcript_name "SYK-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC002066.1--SYK HAVANA mRNA 14023 30380 . + . FI_gene_label "SYK^ENSG00000165025.15" ; ID "AC002066.1--SYK^ENST00000375746.1" ; Parent "AC002066.1--SYK^SYK^ENSG00000165025.15" ; ccdsid "CCDS6688.1" ; exon_id "ENSE00001468302.1" ; exon_number 2 ; gene_id "AC002066.1--SYK^SYK^ENSG00000165025.15" ; gene_name SYK ; gene_type protein_coding ; havana_gene "OTTHUMG00000020200.2" ; havana_transcript "OTTHUMT00000053019.1" ; hgnc_id "HGNC:11491" ; level 2 ; orig_coord_info "chr9,90843899,90844315,+" ; protein_id "ENSP00000364898.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "AC002066.1--SYK^ENST00000375746.1" ; transcript_name "SYK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC004917.1--SLC26A3 HAVANA gene 19030 36997 . + . FI_gene_label "SLC26A3^ENSG00000091138.13" ; ID "AC004917.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; ccdsid "CCDS5748.1" ; exon_id "ENSE00003580858.1" ; exon_number 2 ; gene_id "AC004917.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; gene_name SLC26A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154812.3" ; havana_transcript "OTTHUMT00000337190.2" ; hgnc_id "HGNC:3018" ; level 2 ; orig_coord_info "chr7,107794379,107794509,-" ; protein_id "ENSP00000345873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC004917.1--SLC26A3^ENST00000340010.10" ; transcript_name "SLC26A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC004917.1--SLC26A3 HAVANA mRNA 19030 36997 . + . FI_gene_label "SLC26A3^ENSG00000091138.13" ; ID "AC004917.1--SLC26A3^ENST00000340010.10" ; Parent "AC004917.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; ccdsid "CCDS5748.1" ; exon_id "ENSE00003580858.1" ; exon_number 2 ; gene_id "AC004917.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; gene_name SLC26A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154812.3" ; havana_transcript "OTTHUMT00000337190.2" ; hgnc_id "HGNC:3018" ; level 2 ; orig_coord_info "chr7,107794379,107794509,-" ; protein_id "ENSP00000345873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC004917.1--SLC26A3^ENST00000340010.10" ; transcript_name "SLC26A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC005050.1--SLC26A3 HAVANA gene 8773 26740 . + . FI_gene_label "SLC26A3^ENSG00000091138.13" ; ID "AC005050.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; ccdsid "CCDS5748.1" ; exon_id "ENSE00003580858.1" ; exon_number 2 ; gene_id "AC005050.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; gene_name SLC26A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154812.3" ; havana_transcript "OTTHUMT00000337190.2" ; hgnc_id "HGNC:3018" ; level 2 ; orig_coord_info "chr7,107794379,107794509,-" ; protein_id "ENSP00000345873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC005050.1--SLC26A3^ENST00000340010.10" ; transcript_name "SLC26A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC005050.1--SLC26A3 HAVANA mRNA 8773 26740 . + . FI_gene_label "SLC26A3^ENSG00000091138.13" ; ID "AC005050.1--SLC26A3^ENST00000340010.10" ; Parent "AC005050.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; ccdsid "CCDS5748.1" ; exon_id "ENSE00003580858.1" ; exon_number 2 ; gene_id "AC005050.1--SLC26A3^SLC26A3^ENSG00000091138.13" ; gene_name SLC26A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154812.3" ; havana_transcript "OTTHUMT00000337190.2" ; hgnc_id "HGNC:3018" ; level 2 ; orig_coord_info "chr7,107794379,107794509,-" ; protein_id "ENSP00000345873.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC005050.1--SLC26A3^ENST00000340010.10" ; transcript_name "SLC26A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092142.1--ELAPOR2 HAVANA gene 13629 36508 . + . FI_gene_label "ELAPOR2^ENSG00000164659.15" ; ID "AC092142.1--ELAPOR2^ELAPOR2^ENSG00000164659.15" ; exon_id "ENSE00001532402.2" ; exon_number 1 ; gene_id "AC092142.1--ELAPOR2^ELAPOR2^ENSG00000164659.15" ; gene_name ELAPOR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153995.59" ; havana_transcript "OTTHUMT00000333371.3" ; hgnc_id "HGNC:21945" ; level 2 ; orig_coord_info "chr7,86944899,86945046,-" ; protein_id "ENSP00000378203.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC092142.1--ELAPOR2^ENST00000394714.6" ; transcript_name "ELAPOR2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
AC092142.1--ELAPOR2 HAVANA mRNA 13629 36508 . + . FI_gene_label "ELAPOR2^ENSG00000164659.15" ; ID "AC092142.1--ELAPOR2^ENST00000394714.6" ; Parent "AC092142.1--ELAPOR2^ELAPOR2^ENSG00000164659.15" ; exon_id "ENSE00001532402.2" ; exon_number 1 ; gene_id "AC092142.1--ELAPOR2^ELAPOR2^ENSG00000164659.15" ; gene_name ELAPOR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153995.59" ; havana_transcript "OTTHUMT00000333371.3" ; hgnc_id "HGNC:21945" ; level 2 ; orig_coord_info "chr7,86944899,86945046,-" ; protein_id "ENSP00000378203.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC092142.1--ELAPOR2^ENST00000394714.6" ; transcript_name "ELAPOR2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AL033504.1--SASH1 HAVANA gene 12342 42617 . + . FI_gene_label "SASH1^ENSG00000111961.18" ; ID "AL033504.1--SASH1^SASH1^ENSG00000111961.18" ; ccdsid "CCDS5212.1" ; exon_id "ENSE00001444575.2" ; exon_number 1 ; gene_id "AL033504.1--SASH1^SASH1^ENSG00000111961.18" ; gene_name SASH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015773.4" ; havana_transcript "OTTHUMT00000042619.3" ; hgnc_id "HGNC:19182" ; level 2 ; orig_coord_info "chr6,148343068,148343223,+" ; protein_id "ENSP00000356437.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL033504.1--SASH1^ENST00000367467.8" ; transcript_name "SASH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL033504.1--SASH1 HAVANA mRNA 12342 42617 . + . FI_gene_label "SASH1^ENSG00000111961.18" ; ID "AL033504.1--SASH1^ENST00000367467.8" ; Parent "AL033504.1--SASH1^SASH1^ENSG00000111961.18" ; ccdsid "CCDS5212.1" ; exon_id "ENSE00001444575.2" ; exon_number 1 ; gene_id "AL033504.1--SASH1^SASH1^ENSG00000111961.18" ; gene_name SASH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015773.4" ; havana_transcript "OTTHUMT00000042619.3" ; hgnc_id "HGNC:19182" ; level 2 ; orig_coord_info "chr6,148343068,148343223,+" ; protein_id "ENSP00000356437.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL033504.1--SASH1^ENST00000367467.8" ; transcript_name "SASH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BIRC6--ITGA9 HAVANA gene 87246 122489 . + . FI_gene_label "ITGA9^ENSG00000144668.12" ; ID "BIRC6--ITGA9^ITGA9^ENSG00000144668.12" ; ccdsid "CCDS2669.1" ; exon_id "ENSE00001232677.4" ; exon_number 1 ; gene_id "BIRC6--ITGA9^ITGA9^ENSG00000144668.12" ; gene_name ITGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130815.5" ; havana_transcript "OTTHUMT00000253361.2" ; hgnc_id "HGNC:6145" ; level 2 ; orig_coord_info "chr3,37452375,37452559,+" ; protein_id "ENSP00000264741.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BIRC6--ITGA9^ENST00000264741.10" ; transcript_name "ITGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BIRC6--ITGA9 HAVANA mRNA 87246 122489 . + . FI_gene_label "ITGA9^ENSG00000144668.12" ; ID "BIRC6--ITGA9^ENST00000264741.10" ; Parent "BIRC6--ITGA9^ITGA9^ENSG00000144668.12" ; ccdsid "CCDS2669.1" ; exon_id "ENSE00001232677.4" ; exon_number 1 ; gene_id "BIRC6--ITGA9^ITGA9^ENSG00000144668.12" ; gene_name ITGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130815.5" ; havana_transcript "OTTHUMT00000253361.2" ; hgnc_id "HGNC:6145" ; level 2 ; orig_coord_info "chr3,37452375,37452559,+" ; protein_id "ENSP00000264741.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BIRC6--ITGA9^ENST00000264741.10" ; transcript_name "ITGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BIRC6--ITGA9 HAVANA gene 1001 84219 . + . FI_gene_label "BIRC6^ENSG00000115760.14" ; ID "BIRC6--ITGA9^BIRC6^ENSG00000115760.14" ; ccdsid "CCDS33175.2" ; exon_id "ENSE00000743520.4" ; exon_number 1 ; gene_id "BIRC6--ITGA9^BIRC6^ENSG00000115760.14" ; gene_name BIRC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150528.8" ; havana_transcript "OTTHUMT00000318769.4" ; hgnc_id "HGNC:13516" ; level 2 ; orig_coord_info "chr2,32357162,32357486,+" ; protein_id "ENSP00000393596.2" ; tag basic appris_principal_1 CCDS ; transcript_id "BIRC6--ITGA9^ENST00000421745.6" ; transcript_name "BIRC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
BIRC6--ITGA9 HAVANA mRNA 1001 84219 . + . FI_gene_label "BIRC6^ENSG00000115760.14" ; ID "BIRC6--ITGA9^ENST00000421745.6" ; Parent "BIRC6--ITGA9^BIRC6^ENSG00000115760.14" ; ccdsid "CCDS33175.2" ; exon_id "ENSE00000743520.4" ; exon_number 1 ; gene_id "BIRC6--ITGA9^BIRC6^ENSG00000115760.14" ; gene_name BIRC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150528.8" ; havana_transcript "OTTHUMT00000318769.4" ; hgnc_id "HGNC:13516" ; level 2 ; orig_coord_info "chr2,32357162,32357486,+" ; protein_id "ENSP00000393596.2" ; tag basic appris_principal_1 CCDS ; transcript_id "BIRC6--ITGA9^ENST00000421745.6" ; transcript_name "BIRC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CENPP--ASZ1 HAVANA gene 21356 34397 . + . FI_gene_label "ASZ1^ENSG00000154438.8" ; ID "CENPP--ASZ1^ASZ1^ENSG00000154438.8" ; ccdsid "CCDS5772.1" ; exon_id "ENSE00001646958.2" ; exon_number 1 ; gene_id "CENPP--ASZ1^ASZ1^ENSG00000154438.8" ; gene_name ASZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000064565.11" ; havana_transcript "OTTHUMT00000138907.8" ; hgnc_id "HGNC:1350" ; level 2 ; orig_coord_info "chr7,117427356,117427460,-" ; protein_id "ENSP00000284629.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPP--ASZ1^ENST00000284629.7" ; transcript_name "ASZ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CENPP--ASZ1 HAVANA mRNA 21356 34397 . + . FI_gene_label "ASZ1^ENSG00000154438.8" ; ID "CENPP--ASZ1^ENST00000284629.7" ; Parent "CENPP--ASZ1^ASZ1^ENSG00000154438.8" ; ccdsid "CCDS5772.1" ; exon_id "ENSE00001646958.2" ; exon_number 1 ; gene_id "CENPP--ASZ1^ASZ1^ENSG00000154438.8" ; gene_name ASZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000064565.11" ; havana_transcript "OTTHUMT00000138907.8" ; hgnc_id "HGNC:1350" ; level 2 ; orig_coord_info "chr7,117427356,117427460,-" ; protein_id "ENSP00000284629.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPP--ASZ1^ENST00000284629.7" ; transcript_name "ASZ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CENPP--ASZ1 HAVANA gene 7869 12360 . + . FI_gene_label "CENPP^ENSG00000188312.14" ; ID "CENPP--ASZ1^CENPP^ENSG00000188312.14" ; exon_id "ENSE00001467497.1" ; exon_number 1 ; gene_id "CENPP--ASZ1^CENPP^ENSG00000188312.14" ; gene_name CENPP ; gene_type protein_coding ; havana_gene "OTTHUMG00000020228.2" ; havana_transcript "OTTHUMT00000053097.1" ; hgnc_id "HGNC:32933" ; level 2 ; orig_coord_info "chr9,92611308,92611393,+" ; protein_id "ENSP00000364726.1" ; tag basic ; transcript_id "CENPP--ASZ1^ENST00000375576.1" ; transcript_name "CENPP-201" ; transcript_support_level 1 ; transcript_type protein_coding
CENPP--ASZ1 HAVANA mRNA 7869 12360 . + . FI_gene_label "CENPP^ENSG00000188312.14" ; ID "CENPP--ASZ1^ENST00000375576.1" ; Parent "CENPP--ASZ1^CENPP^ENSG00000188312.14" ; exon_id "ENSE00001467497.1" ; exon_number 1 ; gene_id "CENPP--ASZ1^CENPP^ENSG00000188312.14" ; gene_name CENPP ; gene_type protein_coding ; havana_gene "OTTHUMG00000020228.2" ; havana_transcript "OTTHUMT00000053097.1" ; hgnc_id "HGNC:32933" ; level 2 ; orig_coord_info "chr9,92611308,92611393,+" ; protein_id "ENSP00000364726.1" ; tag basic ; transcript_id "CENPP--ASZ1^ENST00000375576.1" ; transcript_name "CENPP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHST11--DIRAS2 HAVANA gene 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--DIRAS2^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--DIRAS2^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--DIRAS2^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHST11--DIRAS2 HAVANA mRNA 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--DIRAS2^ENST00000303694.6" ; Parent "CHST11--DIRAS2^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--DIRAS2^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--DIRAS2^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHST11--DIRAS2 HAVANA gene 14531 20935 . + . FI_gene_label "DIRAS2^ENSG00000165023.7" ; ID "CHST11--DIRAS2^DIRAS2^ENSG00000165023.7" ; ccdsid "CCDS6687.1" ; exon_id "ENSE00001468329.1" ; exon_number 2 ; gene_id "CHST11--DIRAS2^DIRAS2^ENSG00000165023.7" ; gene_name DIRAS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020196.3" ; havana_transcript "OTTHUMT00000053012.3" ; hgnc_id "HGNC:19323" ; level 2 ; orig_coord_info "chr9,90613231,90613827,-" ; protein_id "ENSP00000364919.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHST11--DIRAS2^ENST00000375765.5" ; transcript_name "DIRAS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHST11--DIRAS2 HAVANA mRNA 14531 20935 . + . FI_gene_label "DIRAS2^ENSG00000165023.7" ; ID "CHST11--DIRAS2^ENST00000375765.5" ; Parent "CHST11--DIRAS2^DIRAS2^ENSG00000165023.7" ; ccdsid "CCDS6687.1" ; exon_id "ENSE00001468329.1" ; exon_number 2 ; gene_id "CHST11--DIRAS2^DIRAS2^ENSG00000165023.7" ; gene_name DIRAS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020196.3" ; havana_transcript "OTTHUMT00000053012.3" ; hgnc_id "HGNC:19323" ; level 2 ; orig_coord_info "chr9,90613231,90613827,-" ; protein_id "ENSP00000364919.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHST11--DIRAS2^ENST00000375765.5" ; transcript_name "DIRAS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHST11--OR7E109P HAVANA gene 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--OR7E109P^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--OR7E109P^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--OR7E109P^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHST11--OR7E109P HAVANA mRNA 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--OR7E109P^ENST00000303694.6" ; Parent "CHST11--OR7E109P^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--OR7E109P^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--OR7E109P^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHST11--SYK HAVANA gene 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--SYK^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--SYK^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--SYK^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHST11--SYK HAVANA mRNA 2375 11492 . + . FI_gene_label "CHST11^ENSG00000171310.11" ; ID "CHST11--SYK^ENST00000303694.6" ; Parent "CHST11--SYK^CHST11^ENSG00000171310.11" ; ccdsid "CCDS9099.1" ; exon_id "ENSE00002378684.2" ; exon_number 1 ; gene_id "CHST11--SYK^CHST11^ENSG00000171310.11" ; gene_name CHST11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169803.5" ; havana_transcript "OTTHUMT00000405960.3" ; hgnc_id "HGNC:17422" ; level 2 ; orig_coord_info "chr12,104457412,104457529,+" ; protein_id "ENSP00000305725.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHST11--SYK^ENST00000303694.6" ; transcript_name "CHST11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHST11--SYK HAVANA gene 15746 32103 . + . FI_gene_label "SYK^ENSG00000165025.15" ; ID "CHST11--SYK^SYK^ENSG00000165025.15" ; ccdsid "CCDS6688.1" ; exon_id "ENSE00001468302.1" ; exon_number 2 ; gene_id "CHST11--SYK^SYK^ENSG00000165025.15" ; gene_name SYK ; gene_type protein_coding ; havana_gene "OTTHUMG00000020200.2" ; havana_transcript "OTTHUMT00000053019.1" ; hgnc_id "HGNC:11491" ; level 2 ; orig_coord_info "chr9,90843899,90844315,+" ; protein_id "ENSP00000364898.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CHST11--SYK^ENST00000375746.1" ; transcript_name "SYK-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHST11--SYK HAVANA mRNA 15746 32103 . + . FI_gene_label "SYK^ENSG00000165025.15" ; ID "CHST11--SYK^ENST00000375746.1" ; Parent "CHST11--SYK^SYK^ENSG00000165025.15" ; ccdsid "CCDS6688.1" ; exon_id "ENSE00001468302.1" ; exon_number 2 ; gene_id "CHST11--SYK^SYK^ENSG00000165025.15" ; gene_name SYK ; gene_type protein_coding ; havana_gene "OTTHUMG00000020200.2" ; havana_transcript "OTTHUMT00000053019.1" ; hgnc_id "HGNC:11491" ; level 2 ; orig_coord_info "chr9,90843899,90844315,+" ; protein_id "ENSP00000364898.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CHST11--SYK^ENST00000375746.1" ; transcript_name "SYK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLASP1--NRCAM HAVANA gene 1001 54900 . + . FI_gene_label "CLASP1^ENSG00000074054.20" ; ID "CLASP1--NRCAM^CLASP1^ENSG00000074054.20" ; exon_id "ENSE00001341077.1" ; exon_number 2 ; gene_id "CLASP1--NRCAM^CLASP1^ENSG00000074054.20" ; gene_name CLASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153331.9" ; hgnc_id "HGNC:17088" ; level 2 ; orig_coord_info "chr2,121605701,121605895,-" ; protein_id "ENSP00000263710.4" ; tag basic appris_alternative_2 ; transcript_id "CLASP1--NRCAM^ENST00000263710.8" ; transcript_name "CLASP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CLASP1--NRCAM HAVANA mRNA 1001 54900 . + . FI_gene_label "CLASP1^ENSG00000074054.20" ; ID "CLASP1--NRCAM^ENST00000263710.8" ; Parent "CLASP1--NRCAM^CLASP1^ENSG00000074054.20" ; exon_id "ENSE00001341077.1" ; exon_number 2 ; gene_id "CLASP1--NRCAM^CLASP1^ENSG00000074054.20" ; gene_name CLASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153331.9" ; hgnc_id "HGNC:17088" ; level 2 ; orig_coord_info "chr2,121605701,121605895,-" ; protein_id "ENSP00000263710.4" ; tag basic appris_alternative_2 ; transcript_id "CLASP1--NRCAM^ENST00000263710.8" ; transcript_name "CLASP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CLASP1--NRCAM HAVANA gene 58279 99202 . + . FI_gene_label "NRCAM^ENSG00000091129.21" ; ID "CLASP1--NRCAM^NRCAM^ENSG00000091129.21" ; ccdsid "CCDS5751.1" ; exon_id "ENSE00001352863.1" ; exon_number 4 ; gene_id "CLASP1--NRCAM^NRCAM^ENSG00000091129.21" ; gene_name NRCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000154973.12" ; havana_transcript "OTTHUMT00000337939.2" ; hgnc_id "HGNC:7994" ; level 2 ; orig_coord_info "chr7,108239959,108240064,-" ; protein_id "ENSP00000325269.6" ; tag basic CCDS ; transcript_id "CLASP1--NRCAM^ENST00000351718.8" ; transcript_name "NRCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLASP1--NRCAM HAVANA mRNA 58279 99202 . + . FI_gene_label "NRCAM^ENSG00000091129.21" ; ID "CLASP1--NRCAM^ENST00000351718.8" ; Parent "CLASP1--NRCAM^NRCAM^ENSG00000091129.21" ; ccdsid "CCDS5751.1" ; exon_id "ENSE00001352863.1" ; exon_number 4 ; gene_id "CLASP1--NRCAM^NRCAM^ENSG00000091129.21" ; gene_name NRCAM ; gene_type protein_coding ; havana_gene "OTTHUMG00000154973.12" ; havana_transcript "OTTHUMT00000337939.2" ; hgnc_id "HGNC:7994" ; level 2 ; orig_coord_info "chr7,108239959,108240064,-" ; protein_id "ENSP00000325269.6" ; tag basic CCDS ; transcript_id "CLASP1--NRCAM^ENST00000351718.8" ; transcript_name "NRCAM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBL--LINC01866 HAVANA gene 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--LINC01866^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--LINC01866^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--LINC01866^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
COBL--LINC01866 HAVANA mRNA 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--LINC01866^ENST00000265136.12" ; Parent "COBL--LINC01866^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--LINC01866^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--LINC01866^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COBL--RN7SKP168 HAVANA gene 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--RN7SKP168^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--RN7SKP168^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--RN7SKP168^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
COBL--RN7SKP168 HAVANA mRNA 1010 32470 . + . FI_gene_label "COBL^ENSG00000106078.19" ; ID "COBL--RN7SKP168^ENST00000265136.12" ; Parent "COBL--RN7SKP168^COBL^ENSG00000106078.19" ; ccdsid "CCDS34637.1" ; exon_id "ENSE00001957186.2" ; exon_number 1 ; gene_id "COBL--RN7SKP168^COBL^ENSG00000106078.19" ; gene_name COBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000155999.7" ; havana_transcript "OTTHUMT00000342682.2" ; hgnc_id "HGNC:22199" ; level 2 ; orig_coord_info "chr7,51316593,51316633,-" ; protein_id "ENSP00000265136.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COBL--RN7SKP168^ENST00000265136.12" ; transcript_name "COBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL13A1--SPON1 HAVANA gene 1053 53491 . + . FI_gene_label "COL13A1^ENSG00000197467.16" ; ID "COL13A1--SPON1^COL13A1^ENSG00000197467.16" ; ccdsid "CCDS44424.2" ; exon_id "ENSE00001274444.4" ; exon_number 1 ; gene_id "COL13A1--SPON1^COL13A1^ENSG00000197467.16" ; gene_name COL13A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018394.24" ; havana_transcript "OTTHUMT00000048469.3" ; hgnc_id "HGNC:2190" ; level 2 ; orig_coord_info "chr10,69802424,69802717,+" ; protein_id "ENSP00000346553.3" ; tag dotter_confirmed basic CCDS ; transcript_id "COL13A1--SPON1^ENST00000354547.7" ; transcript_name "COL13A1-201" ; transcript_support_level 5 ; transcript_type protein_coding
COL13A1--SPON1 HAVANA mRNA 1053 53491 . + . FI_gene_label "COL13A1^ENSG00000197467.16" ; ID "COL13A1--SPON1^ENST00000354547.7" ; Parent "COL13A1--SPON1^COL13A1^ENSG00000197467.16" ; ccdsid "CCDS44424.2" ; exon_id "ENSE00001274444.4" ; exon_number 1 ; gene_id "COL13A1--SPON1^COL13A1^ENSG00000197467.16" ; gene_name COL13A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018394.24" ; havana_transcript "OTTHUMT00000048469.3" ; hgnc_id "HGNC:2190" ; level 2 ; orig_coord_info "chr10,69802424,69802717,+" ; protein_id "ENSP00000346553.3" ; tag dotter_confirmed basic CCDS ; transcript_id "COL13A1--SPON1^ENST00000354547.7" ; transcript_name "COL13A1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
COL13A1--SPON1 HAVANA gene 57521 76552 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "COL13A1--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "COL13A1--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL13A1--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL13A1--SPON1 HAVANA mRNA 57521 76552 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "COL13A1--SPON1^ENST00000576479.4" ; Parent "COL13A1--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "COL13A1--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL13A1--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DGCR2--WARS2-AS1 HAVANA gene 1043 16284 . + . FI_gene_label "DGCR2^ENSG00000070413.20" ; ID "DGCR2--WARS2-AS1^DGCR2^ENSG00000070413.20" ; ccdsid "CCDS33598.1" ; exon_id "ENSE00003847150.1" ; exon_number 1 ; gene_id "DGCR2--WARS2-AS1^DGCR2^ENSG00000070413.20" ; gene_name DGCR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150141.3" ; havana_transcript "OTTHUMT00000316504.2" ; hgnc_id "HGNC:2845" ; level 2 ; orig_coord_info "chr22,19122128,19122206,-" ; protein_id "ENSP00000263196.7" ; tag non_canonical_conserved basic MANE_Select appris_principal_2 CCDS ; transcript_id "DGCR2--WARS2-AS1^ENST00000263196.12" ; transcript_name "DGCR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DGCR2--WARS2-AS1 HAVANA mRNA 1043 16284 . + . FI_gene_label "DGCR2^ENSG00000070413.20" ; ID "DGCR2--WARS2-AS1^ENST00000263196.12" ; Parent "DGCR2--WARS2-AS1^DGCR2^ENSG00000070413.20" ; ccdsid "CCDS33598.1" ; exon_id "ENSE00003847150.1" ; exon_number 1 ; gene_id "DGCR2--WARS2-AS1^DGCR2^ENSG00000070413.20" ; gene_name DGCR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150141.3" ; havana_transcript "OTTHUMT00000316504.2" ; hgnc_id "HGNC:2845" ; level 2 ; orig_coord_info "chr22,19122128,19122206,-" ; protein_id "ENSP00000263196.7" ; tag non_canonical_conserved basic MANE_Select appris_principal_2 CCDS ; transcript_id "DGCR2--WARS2-AS1^ENST00000263196.12" ; transcript_name "DGCR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHB2--TMEM39B HAVANA gene 33703 43874 . + . FI_gene_label "TMEM39B^ENSG00000121775.18" ; ID "EPHB2--TMEM39B^TMEM39B^ENSG00000121775.18" ; ccdsid "CCDS351.2" ; exon_id "ENSE00001612773.2" ; exon_number 1 ; gene_id "EPHB2--TMEM39B^TMEM39B^ENSG00000121775.18" ; gene_name TMEM39B ; gene_type protein_coding ; havana_gene "OTTHUMG00000004020.10" ; havana_transcript "OTTHUMT00000011489.3" ; hgnc_id "HGNC:25510" ; level 2 ; orig_coord_info "chr1,32073048,32073051,+" ; protein_id "ENSP00000338165.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPHB2--TMEM39B^ENST00000336294.10" ; transcript_name "TMEM39B-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPHB2--TMEM39B HAVANA mRNA 33703 43874 . + . FI_gene_label "TMEM39B^ENSG00000121775.18" ; ID "EPHB2--TMEM39B^ENST00000336294.10" ; Parent "EPHB2--TMEM39B^TMEM39B^ENSG00000121775.18" ; ccdsid "CCDS351.2" ; exon_id "ENSE00001612773.2" ; exon_number 1 ; gene_id "EPHB2--TMEM39B^TMEM39B^ENSG00000121775.18" ; gene_name TMEM39B ; gene_type protein_coding ; havana_gene "OTTHUMG00000004020.10" ; havana_transcript "OTTHUMT00000011489.3" ; hgnc_id "HGNC:25510" ; level 2 ; orig_coord_info "chr1,32073048,32073051,+" ; protein_id "ENSP00000338165.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPHB2--TMEM39B^ENST00000336294.10" ; transcript_name "TMEM39B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHB2--TMEM39B HAVANA gene 2206 22046 . + . FI_gene_label "EPHB2^ENSG00000133216.17" ; ID "EPHB2--TMEM39B^EPHB2^ENSG00000133216.17" ; exon_id "ENSE00001464053.1" ; exon_number 1 ; gene_id "EPHB2--TMEM39B^EPHB2^ENSG00000133216.17" ; gene_name EPHB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002881.4" ; havana_transcript "OTTHUMT00000008062.2" ; hgnc_id "HGNC:3393" ; level 2 ; orig_coord_info "chr1,22775202,22775244,+" ; protein_id "ENSP00000363758.1" ; tag non_canonical_polymorphism dotter_confirmed basic ; transcript_id "EPHB2--TMEM39B^ENST00000374627.1" ; transcript_name "EPHB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
EPHB2--TMEM39B HAVANA mRNA 2206 22046 . + . FI_gene_label "EPHB2^ENSG00000133216.17" ; ID "EPHB2--TMEM39B^ENST00000374627.1" ; Parent "EPHB2--TMEM39B^EPHB2^ENSG00000133216.17" ; exon_id "ENSE00001464053.1" ; exon_number 1 ; gene_id "EPHB2--TMEM39B^EPHB2^ENSG00000133216.17" ; gene_name EPHB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002881.4" ; havana_transcript "OTTHUMT00000008062.2" ; hgnc_id "HGNC:3393" ; level 2 ; orig_coord_info "chr1,22775202,22775244,+" ; protein_id "ENSP00000363758.1" ; tag non_canonical_polymorphism dotter_confirmed basic ; transcript_id "EPHB2--TMEM39B^ENST00000374627.1" ; transcript_name "EPHB2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FAF1--CDKN2C HAVANA gene 31499 36860 . + . FI_gene_label "CDKN2C^ENSG00000123080.12" ; ID "FAF1--CDKN2C^CDKN2C^ENSG00000123080.12" ; ccdsid "CCDS555.1" ; exon_id "ENSE00001064516.1" ; exon_number 3 ; gene_id "FAF1--CDKN2C^CDKN2C^ENSG00000123080.12" ; gene_name CDKN2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000008046.4" ; havana_transcript "OTTHUMT00000022058.1" ; hgnc_id "HGNC:1789" ; level 2 ; orig_coord_info "chr1,50970369,50970497,+" ; protein_id "ENSP00000262662.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "FAF1--CDKN2C^ENST00000262662.5" ; transcript_name "CDKN2C-201" ; transcript_support_level 2 ; transcript_type protein_coding
FAF1--CDKN2C HAVANA mRNA 31499 36860 . + . FI_gene_label "CDKN2C^ENSG00000123080.12" ; ID "FAF1--CDKN2C^ENST00000262662.5" ; Parent "FAF1--CDKN2C^CDKN2C^ENSG00000123080.12" ; ccdsid "CCDS555.1" ; exon_id "ENSE00001064516.1" ; exon_number 3 ; gene_id "FAF1--CDKN2C^CDKN2C^ENSG00000123080.12" ; gene_name CDKN2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000008046.4" ; havana_transcript "OTTHUMT00000022058.1" ; hgnc_id "HGNC:1789" ; level 2 ; orig_coord_info "chr1,50970369,50970497,+" ; protein_id "ENSP00000262662.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "FAF1--CDKN2C^ENST00000262662.5" ; transcript_name "CDKN2C-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FAF1--CDKN2C ENSEMBL gene 1475 24250 . + . FI_gene_label "FAF1^ENSG00000185104.20" ; ID "FAF1--CDKN2C^FAF1^ENSG00000185104.20" ; exon_id "ENSE00002276283.2" ; exon_number 1 ; gene_id "FAF1--CDKN2C^FAF1^ENSG00000185104.20" ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7" ; hgnc_id "HGNC:3578" ; level 3 ; orig_coord_info "chr1,50959767,50959787,-" ; protein_id "ENSP00000360843.5" ; tag basic ; transcript_id "FAF1--CDKN2C^ENST00000371778.5" ; transcript_name "FAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAF1--CDKN2C ENSEMBL mRNA 1475 24250 . + . FI_gene_label "FAF1^ENSG00000185104.20" ; ID "FAF1--CDKN2C^ENST00000371778.5" ; Parent "FAF1--CDKN2C^FAF1^ENSG00000185104.20" ; exon_id "ENSE00002276283.2" ; exon_number 1 ; gene_id "FAF1--CDKN2C^FAF1^ENSG00000185104.20" ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7" ; hgnc_id "HGNC:3578" ; level 3 ; orig_coord_info "chr1,50959767,50959787,-" ; protein_id "ENSP00000360843.5" ; tag basic ; transcript_id "FAF1--CDKN2C^ENST00000371778.5" ; transcript_name "FAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAF1--MIR4421 ENSEMBL gene 1475 24250 . + . FI_gene_label "FAF1^ENSG00000185104.20" ; ID "FAF1--MIR4421^FAF1^ENSG00000185104.20" ; exon_id "ENSE00002276283.2" ; exon_number 1 ; gene_id "FAF1--MIR4421^FAF1^ENSG00000185104.20" ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7" ; hgnc_id "HGNC:3578" ; level 3 ; orig_coord_info "chr1,50959767,50959787,-" ; protein_id "ENSP00000360843.5" ; tag basic ; transcript_id "FAF1--MIR4421^ENST00000371778.5" ; transcript_name "FAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAF1--MIR4421 ENSEMBL mRNA 1475 24250 . + . FI_gene_label "FAF1^ENSG00000185104.20" ; ID "FAF1--MIR4421^ENST00000371778.5" ; Parent "FAF1--MIR4421^FAF1^ENSG00000185104.20" ; exon_id "ENSE00002276283.2" ; exon_number 1 ; gene_id "FAF1--MIR4421^FAF1^ENSG00000185104.20" ; gene_name FAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007930.7" ; hgnc_id "HGNC:3578" ; level 3 ; orig_coord_info "chr1,50959767,50959787,-" ; protein_id "ENSP00000360843.5" ; tag basic ; transcript_id "FAF1--MIR4421^ENST00000371778.5" ; transcript_name "FAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLIS3--FGF7P4 HAVANA gene 10255 36922 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "GLIS3--FGF7P4^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "GLIS3--FGF7P4^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "GLIS3--FGF7P4^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLIS3--FGF7P4 HAVANA mRNA 10255 36922 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "GLIS3--FGF7P4^ENST00000324333.14" ; Parent "GLIS3--FGF7P4^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "GLIS3--FGF7P4^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "GLIS3--FGF7P4^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLIS3--FGF7P6 HAVANA gene 10255 36922 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "GLIS3--FGF7P6^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "GLIS3--FGF7P6^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "GLIS3--FGF7P6^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLIS3--FGF7P6 HAVANA mRNA 10255 36922 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "GLIS3--FGF7P6^ENST00000324333.14" ; Parent "GLIS3--FGF7P6^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "GLIS3--FGF7P6^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "GLIS3--FGF7P6^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2H2--FAM114A1 HAVANA gene 1089 21631 . + . FI_gene_label "GTF2H2^ENSG00000145736.14" ; ID "GTF2H2--FAM114A1^GTF2H2^ENSG00000145736.14" ; ccdsid "CCDS34183.1" ; exon_id "ENSE00003682425.1" ; exon_number 2 ; gene_id "GTF2H2--FAM114A1^GTF2H2^ENSG00000145736.14" ; gene_name GTF2H2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164542.4" ; havana_transcript "OTTHUMT00000372630.3" ; hgnc_id "HGNC:4656" ; level 2 ; orig_coord_info "chr5,71062708,71062763,-" ; protein_id "ENSP00000274400.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GTF2H2--FAM114A1^ENST00000274400.9" ; transcript_name "GTF2H2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2H2--FAM114A1 HAVANA mRNA 1089 21631 . + . FI_gene_label "GTF2H2^ENSG00000145736.14" ; ID "GTF2H2--FAM114A1^ENST00000274400.9" ; Parent "GTF2H2--FAM114A1^GTF2H2^ENSG00000145736.14" ; ccdsid "CCDS34183.1" ; exon_id "ENSE00003682425.1" ; exon_number 2 ; gene_id "GTF2H2--FAM114A1^GTF2H2^ENSG00000145736.14" ; gene_name GTF2H2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164542.4" ; havana_transcript "OTTHUMT00000372630.3" ; hgnc_id "HGNC:4656" ; level 2 ; orig_coord_info "chr5,71062708,71062763,-" ; protein_id "ENSP00000274400.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GTF2H2--FAM114A1^ENST00000274400.9" ; transcript_name "GTF2H2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2H2--FAM114A1 HAVANA gene 24761 42806 . + . FI_gene_label "FAM114A1^ENSG00000197712.12" ; ID "GTF2H2--FAM114A1^FAM114A1^ENSG00000197712.12" ; ccdsid "CCDS3447.1" ; exon_id "ENSE00001077154.4" ; exon_number 3 ; gene_id "GTF2H2--FAM114A1^FAM114A1^ENSG00000197712.12" ; gene_name FAM114A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128583.5" ; havana_transcript "OTTHUMT00000250436.2" ; hgnc_id "HGNC:25087" ; level 2 ; orig_coord_info "chr4,38878079,38878426,+" ; protein_id "ENSP00000351740.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2--FAM114A1^ENST00000358869.5" ; transcript_name "FAM114A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2H2--FAM114A1 HAVANA mRNA 24761 42806 . + . FI_gene_label "FAM114A1^ENSG00000197712.12" ; ID "GTF2H2--FAM114A1^ENST00000358869.5" ; Parent "GTF2H2--FAM114A1^FAM114A1^ENSG00000197712.12" ; ccdsid "CCDS3447.1" ; exon_id "ENSE00001077154.4" ; exon_number 3 ; gene_id "GTF2H2--FAM114A1^FAM114A1^ENSG00000197712.12" ; gene_name FAM114A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128583.5" ; havana_transcript "OTTHUMT00000250436.2" ; hgnc_id "HGNC:25087" ; level 2 ; orig_coord_info "chr4,38878079,38878426,+" ; protein_id "ENSP00000351740.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2--FAM114A1^ENST00000358869.5" ; transcript_name "FAM114A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HMGA2--CHMP1A HAVANA gene 1001 11887 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HMGA2--CHMP1A HAVANA mRNA 1001 11887 . + . FI_gene_label "HMGA2^ENSG00000149948.14" ; ID "HMGA2--CHMP1A^ENST00000354636.7" ; Parent "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; ccdsid "CCDS31854.1" ; exon_id "ENSE00001242304.6" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^HMGA2^ENSG00000149948.14" ; gene_name HMGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168936.2" ; havana_transcript "OTTHUMT00000401660.1" ; hgnc_id "HGNC:5009" ; level 2 ; orig_coord_info "chr12,65825271,65825381,+" ; protein_id "ENSP00000346658.3" ; tag basic CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000354636.7" ; transcript_name "HMGA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HMGA2--CHMP1A HAVANA gene 27437 37894 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
HMGA2--CHMP1A HAVANA mRNA 27437 37894 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "HMGA2--CHMP1A^ENST00000397901.8" ; Parent "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "HMGA2--CHMP1A^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HMGA2--CHMP1A^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LPAR1--SUSD1 HAVANA gene 15353 37287 . + . FI_gene_label "SUSD1^ENSG00000106868.17" ; ID "LPAR1--SUSD1^SUSD1^ENSG00000106868.17" ; exon_id "ENSE00001706926.1" ; exon_number 1 ; gene_id "LPAR1--SUSD1^SUSD1^ENSG00000106868.17" ; gene_name SUSD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020499.5" ; havana_transcript "OTTHUMT00000053667.2" ; hgnc_id "HGNC:25413" ; level 1 ; orig_coord_info "chr9,112175133,112175185,-" ; protein_id "ENSP00000347558.3" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "LPAR1--SUSD1^ENST00000355396.7" ; transcript_name "SUSD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
LPAR1--SUSD1 HAVANA mRNA 15353 37287 . + . FI_gene_label "SUSD1^ENSG00000106868.17" ; ID "LPAR1--SUSD1^ENST00000355396.7" ; Parent "LPAR1--SUSD1^SUSD1^ENSG00000106868.17" ; exon_id "ENSE00001706926.1" ; exon_number 1 ; gene_id "LPAR1--SUSD1^SUSD1^ENSG00000106868.17" ; gene_name SUSD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020499.5" ; havana_transcript "OTTHUMT00000053667.2" ; hgnc_id "HGNC:25413" ; level 1 ; orig_coord_info "chr9,112175133,112175185,-" ; protein_id "ENSP00000347558.3" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "LPAR1--SUSD1^ENST00000355396.7" ; transcript_name "SUSD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LPAR1--SUSD1 HAVANA gene 1374 11326 . + . FI_gene_label "LPAR1^ENSG00000198121.13" ; ID "LPAR1--SUSD1^LPAR1^ENSG00000198121.13" ; ccdsid "CCDS6777.1" ; exon_id "ENSE00002724435.1" ; exon_number 2 ; gene_id "LPAR1--SUSD1^LPAR1^ENSG00000198121.13" ; gene_name LPAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020486.3" ; havana_transcript "OTTHUMT00000053633.1" ; hgnc_id "HGNC:3166" ; level 2 ; orig_coord_info "chr9,110972073,110972117,-" ; protein_id "ENSP00000351755.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "LPAR1--SUSD1^ENST00000358883.8" ; transcript_name "LPAR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
LPAR1--SUSD1 HAVANA mRNA 1374 11326 . + . FI_gene_label "LPAR1^ENSG00000198121.13" ; ID "LPAR1--SUSD1^ENST00000358883.8" ; Parent "LPAR1--SUSD1^LPAR1^ENSG00000198121.13" ; ccdsid "CCDS6777.1" ; exon_id "ENSE00002724435.1" ; exon_number 2 ; gene_id "LPAR1--SUSD1^LPAR1^ENSG00000198121.13" ; gene_name LPAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020486.3" ; havana_transcript "OTTHUMT00000053633.1" ; hgnc_id "HGNC:3166" ; level 2 ; orig_coord_info "chr9,110972073,110972117,-" ; protein_id "ENSP00000351755.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "LPAR1--SUSD1^ENST00000358883.8" ; transcript_name "LPAR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MFSD14B--LINC01591 HAVANA gene 1001 15105 . + . FI_gene_label "MFSD14B^ENSG00000148110.16" ; ID "MFSD14B--LINC01591^MFSD14B^ENSG00000148110.16" ; ccdsid "CCDS6710.2" ; exon_id "ENSE00002704858.2" ; exon_number 1 ; gene_id "MFSD14B--LINC01591^MFSD14B^ENSG00000148110.16" ; gene_name MFSD14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000020265.3" ; havana_transcript "OTTHUMT00000053184.2" ; hgnc_id "HGNC:23376" ; level 2 ; orig_coord_info "chr9,94374820,94374927,+" ; protein_id "ENSP00000364493.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MFSD14B--LINC01591^ENST00000375344.8" ; transcript_name "MFSD14B-201" ; transcript_support_level 1 ; transcript_type protein_coding
MFSD14B--LINC01591 HAVANA mRNA 1001 15105 . + . FI_gene_label "MFSD14B^ENSG00000148110.16" ; ID "MFSD14B--LINC01591^ENST00000375344.8" ; Parent "MFSD14B--LINC01591^MFSD14B^ENSG00000148110.16" ; ccdsid "CCDS6710.2" ; exon_id "ENSE00002704858.2" ; exon_number 1 ; gene_id "MFSD14B--LINC01591^MFSD14B^ENSG00000148110.16" ; gene_name MFSD14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000020265.3" ; havana_transcript "OTTHUMT00000053184.2" ; hgnc_id "HGNC:23376" ; level 2 ; orig_coord_info "chr9,94374820,94374927,+" ; protein_id "ENSP00000364493.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MFSD14B--LINC01591^ENST00000375344.8" ; transcript_name "MFSD14B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MMP24OS--PTPRT HAVANA gene 17458 62717 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "MMP24OS--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "MMP24OS--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "MMP24OS--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
MMP24OS--PTPRT HAVANA mRNA 17458 62717 . + . FI_gene_label "PTPRT^ENSG00000196090.12" ; ID "MMP24OS--PTPRT^ENST00000356100.6" ; Parent "MMP24OS--PTPRT^PTPRT^ENSG00000196090.12" ; exon_id "ENSE00001299020.1" ; exon_number 1 ; gene_id "MMP24OS--PTPRT^PTPRT^ENSG00000196090.12" ; gene_name PTPRT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033040.5" ; havana_transcript "OTTHUMT00000080317.1" ; hgnc_id "HGNC:9682" ; level 2 ; orig_coord_info "chr20,43189646,43189733,-" ; protein_id "ENSP00000348408.2" ; tag dotter_confirmed not_organism_supported basic appris_alternative_2 ; transcript_id "MMP24OS--PTPRT^ENST00000356100.6" ; transcript_name "PTPRT-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MMP24OS--PTPRT HAVANA gene 1003 1982 . + . FI_gene_label "MMP24OS^ENSG00000126005.17" ; ID "MMP24OS--PTPRT^MMP24OS^ENSG00000126005.17" ; ccdsid "CCDS86948.1" ; exon_id "ENSE00001796862.1" ; exon_number 2 ; gene_id "MMP24OS--PTPRT^MMP24OS^ENSG00000126005.17" ; gene_name MMP24OS ; gene_type protein_coding ; havana_gene "OTTHUMG00000032333.10" ; havana_transcript "OTTHUMT00000078855.3" ; hgnc_id "HGNC:44421" ; level 2 ; orig_coord_info "chr20,35277717,35277929,-" ; protein_id "ENSP00000488948.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MMP24OS--PTPRT^ENST00000424358.1" ; transcript_name "MMP24OS-201" ; transcript_support_level 2 ; transcript_type protein_coding
MMP24OS--PTPRT HAVANA mRNA 1003 1982 . + . FI_gene_label "MMP24OS^ENSG00000126005.17" ; ID "MMP24OS--PTPRT^ENST00000424358.1" ; Parent "MMP24OS--PTPRT^MMP24OS^ENSG00000126005.17" ; ccdsid "CCDS86948.1" ; exon_id "ENSE00001796862.1" ; exon_number 2 ; gene_id "MMP24OS--PTPRT^MMP24OS^ENSG00000126005.17" ; gene_name MMP24OS ; gene_type protein_coding ; havana_gene "OTTHUMG00000032333.10" ; havana_transcript "OTTHUMT00000078855.3" ; hgnc_id "HGNC:44421" ; level 2 ; orig_coord_info "chr20,35277717,35277929,-" ; protein_id "ENSP00000488948.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MMP24OS--PTPRT^ENST00000424358.1" ; transcript_name "MMP24OS-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NTM-AS1--OPCML HAVANA gene 15583 31575 . + . FI_gene_label "OPCML^ENSG00000183715.13" ; ID "NTM-AS1--OPCML^OPCML^ENSG00000183715.13" ; ccdsid "CCDS8492.1" ; exon_id "ENSE00002159446.1" ; exon_number 1 ; gene_id "NTM-AS1--OPCML^OPCML^ENSG00000183715.13" ; gene_name OPCML ; gene_type protein_coding ; havana_gene "OTTHUMG00000163658.4" ; havana_transcript "OTTHUMT00000374689.3" ; hgnc_id "HGNC:8143" ; level 2 ; orig_coord_info "chr11,132942926,132943092,-" ; protein_id "ENSP00000330862.7" ; tag basic appris_principal_2 CCDS ; transcript_id "NTM-AS1--OPCML^ENST00000331898.11" ; transcript_name "OPCML-201" ; transcript_support_level 1 ; transcript_type protein_coding
NTM-AS1--OPCML HAVANA mRNA 15583 31575 . + . FI_gene_label "OPCML^ENSG00000183715.13" ; ID "NTM-AS1--OPCML^ENST00000331898.11" ; Parent "NTM-AS1--OPCML^OPCML^ENSG00000183715.13" ; ccdsid "CCDS8492.1" ; exon_id "ENSE00002159446.1" ; exon_number 1 ; gene_id "NTM-AS1--OPCML^OPCML^ENSG00000183715.13" ; gene_name OPCML ; gene_type protein_coding ; havana_gene "OTTHUMG00000163658.4" ; havana_transcript "OTTHUMT00000374689.3" ; hgnc_id "HGNC:8143" ; level 2 ; orig_coord_info "chr11,132942926,132943092,-" ; protein_id "ENSP00000330862.7" ; tag basic appris_principal_2 CCDS ; transcript_id "NTM-AS1--OPCML^ENST00000331898.11" ; transcript_name "OPCML-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUP98--PRMT3 HAVANA gene 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--PRMT3^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--PRMT3^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--PRMT3^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUP98--PRMT3 HAVANA mRNA 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--PRMT3^ENST00000324932.12" ; Parent "NUP98--PRMT3^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--PRMT3^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--PRMT3^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUP98--PRMT3 HAVANA gene 46143 65205 . + . FI_gene_label "PRMT3^ENSG00000185238.13" ; ID "NUP98--PRMT3^PRMT3^ENSG00000185238.13" ; exon_id "ENSE00002194773.1" ; exon_number 1 ; gene_id "NUP98--PRMT3^PRMT3^ENSG00000185238.13" ; gene_name PRMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166022.4" ; havana_transcript "OTTHUMT00000387490.2" ; hgnc_id "HGNC:30163" ; level 2 ; orig_coord_info "chr11,20387747,20387774,+" ; protein_id "ENSP00000329586.5" ; transcript_id "NUP98--PRMT3^ENST00000330796.9" ; transcript_name "PRMT3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
NUP98--PRMT3 HAVANA mRNA 46143 65205 . + . FI_gene_label "PRMT3^ENSG00000185238.13" ; ID "NUP98--PRMT3^ENST00000330796.9" ; Parent "NUP98--PRMT3^PRMT3^ENSG00000185238.13" ; exon_id "ENSE00002194773.1" ; exon_number 1 ; gene_id "NUP98--PRMT3^PRMT3^ENSG00000185238.13" ; gene_name PRMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166022.4" ; havana_transcript "OTTHUMT00000387490.2" ; hgnc_id "HGNC:30163" ; level 2 ; orig_coord_info "chr11,20387747,20387774,+" ; protein_id "ENSP00000329586.5" ; transcript_id "NUP98--PRMT3^ENST00000330796.9" ; transcript_name "PRMT3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PARD3--AL392046.1 ENSEMBL gene 1001 26610 . + . FI_gene_label "PARD3^ENSG00000148498.16" ; ID "PARD3--AL392046.1^PARD3^ENSG00000148498.16" ; ccdsid "CCDS53516.1" ; exon_id "ENSE00001413918.3" ; exon_number 1 ; gene_id "PARD3--AL392046.1^PARD3^ENSG00000148498.16" ; gene_name PARD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017948.2" ; hgnc_id "HGNC:16051" ; level 3 ; orig_coord_info "chr10,34814876,34814995,-" ; protein_id "ENSP00000341844.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "PARD3--AL392046.1^ENST00000340077.9" ; transcript_name "PARD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARD3--AL392046.1 ENSEMBL mRNA 1001 26610 . + . FI_gene_label "PARD3^ENSG00000148498.16" ; ID "PARD3--AL392046.1^ENST00000340077.9" ; Parent "PARD3--AL392046.1^PARD3^ENSG00000148498.16" ; ccdsid "CCDS53516.1" ; exon_id "ENSE00001413918.3" ; exon_number 1 ; gene_id "PARD3--AL392046.1^PARD3^ENSG00000148498.16" ; gene_name PARD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017948.2" ; hgnc_id "HGNC:16051" ; level 3 ; orig_coord_info "chr10,34814876,34814995,-" ; protein_id "ENSP00000341844.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "PARD3--AL392046.1^ENST00000340077.9" ; transcript_name "PARD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
POLR2J3--KIF16B HAVANA gene 13639 46749 . + . FI_gene_label "KIF16B^ENSG00000089177.19" ; ID "POLR2J3--KIF16B^KIF16B^ENSG00000089177.19" ; ccdsid "CCDS13122.1" ; exon_id "ENSE00003901059.1" ; exon_number 1 ; gene_id "POLR2J3--KIF16B^KIF16B^ENSG00000089177.19" ; gene_name KIF16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000031927.4" ; havana_transcript "OTTHUMT00000078104.2" ; hgnc_id "HGNC:15869" ; level 2 ; orig_coord_info "chr20,16573229,16573275,-" ; protein_id "ENSP00000347076.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "POLR2J3--KIF16B^ENST00000354981.7" ; transcript_name "KIF16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLR2J3--KIF16B HAVANA mRNA 13639 46749 . + . FI_gene_label "KIF16B^ENSG00000089177.19" ; ID "POLR2J3--KIF16B^ENST00000354981.7" ; Parent "POLR2J3--KIF16B^KIF16B^ENSG00000089177.19" ; ccdsid "CCDS13122.1" ; exon_id "ENSE00003901059.1" ; exon_number 1 ; gene_id "POLR2J3--KIF16B^KIF16B^ENSG00000089177.19" ; gene_name KIF16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000031927.4" ; havana_transcript "OTTHUMT00000078104.2" ; hgnc_id "HGNC:15869" ; level 2 ; orig_coord_info "chr20,16573229,16573275,-" ; protein_id "ENSP00000347076.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "POLR2J3--KIF16B^ENST00000354981.7" ; transcript_name "KIF16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
POLR2J3--KIF16B HAVANA gene 1001 10115 . + . FI_gene_label "POLR2J3^ENSG00000285437.1" ; ID "POLR2J3--KIF16B^POLR2J3^ENSG00000285437.1" ; exon_id "ENSE00003824619.1" ; exon_number 1 ; gene_id "POLR2J3--KIF16B^POLR2J3^ENSG00000285437.1" ; gene_name POLR2J3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192387.1" ; havana_transcript "OTTHUMT00000358591.2" ; hgnc_id "HGNC:33853" ; level 2 ; orig_coord_info "chr7,102572472,102572521,-" ; protein_id "ENSP00000422109.1" ; tag basic ; transcript_id "POLR2J3--KIF16B^ENST00000511313.5" ; transcript_name "POLR2J3-217" ; transcript_support_level 1 ; transcript_type protein_coding
POLR2J3--KIF16B HAVANA mRNA 1001 10115 . + . FI_gene_label "POLR2J3^ENSG00000285437.1" ; ID "POLR2J3--KIF16B^ENST00000511313.5" ; Parent "POLR2J3--KIF16B^POLR2J3^ENSG00000285437.1" ; exon_id "ENSE00003824619.1" ; exon_number 1 ; gene_id "POLR2J3--KIF16B^POLR2J3^ENSG00000285437.1" ; gene_name POLR2J3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192387.1" ; havana_transcript "OTTHUMT00000358591.2" ; hgnc_id "HGNC:33853" ; level 2 ; orig_coord_info "chr7,102572472,102572521,-" ; protein_id "ENSP00000422109.1" ; tag basic ; transcript_id "POLR2J3--KIF16B^ENST00000511313.5" ; transcript_name "POLR2J3-217" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSMB2--CELF4 HAVANA gene 13806 31421 . + . FI_gene_label "CELF4^ENSG00000101489.20" ; ID "PSMB2--CELF4^CELF4^ENSG00000101489.20" ; ccdsid "CCDS45858.1" ; exon_id "ENSE00002821439.1" ; exon_number 1 ; gene_id "PSMB2--CELF4^CELF4^ENSG00000101489.20" ; gene_name CELF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178178.8" ; havana_transcript "OTTHUMT00000440887.1" ; hgnc_id "HGNC:14015" ; level 2 ; orig_coord_info "chr18,37565356,37565641,-" ; protein_id "ENSP00000335631.4" ; tag basic CCDS ; transcript_id "PSMB2--CELF4^ENST00000334919.9" ; transcript_name "CELF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSMB2--CELF4 HAVANA mRNA 13806 31421 . + . FI_gene_label "CELF4^ENSG00000101489.20" ; ID "PSMB2--CELF4^ENST00000334919.9" ; Parent "PSMB2--CELF4^CELF4^ENSG00000101489.20" ; ccdsid "CCDS45858.1" ; exon_id "ENSE00002821439.1" ; exon_number 1 ; gene_id "PSMB2--CELF4^CELF4^ENSG00000101489.20" ; gene_name CELF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178178.8" ; havana_transcript "OTTHUMT00000440887.1" ; hgnc_id "HGNC:14015" ; level 2 ; orig_coord_info "chr18,37565356,37565641,-" ; protein_id "ENSP00000335631.4" ; tag basic CCDS ; transcript_id "PSMB2--CELF4^ENST00000334919.9" ; transcript_name "CELF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSMB2--CELF4 HAVANA gene 1001 10619 . + . FI_gene_label "PSMB2^ENSG00000126067.12" ; ID "PSMB2--CELF4^PSMB2^ENSG00000126067.12" ; ccdsid "CCDS394.1" ; exon_id "ENSE00001930801.2" ; exon_number 1 ; gene_id "PSMB2--CELF4^PSMB2^ENSG00000126067.12" ; gene_name PSMB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004169.3" ; havana_transcript "OTTHUMT00000012016.2" ; hgnc_id "HGNC:9539" ; level 2 ; orig_coord_info "chr1,35641342,35641432,-" ; protein_id "ENSP00000362334.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMB2--CELF4^ENST00000373237.4" ; transcript_name "PSMB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSMB2--CELF4 HAVANA mRNA 1001 10619 . + . FI_gene_label "PSMB2^ENSG00000126067.12" ; ID "PSMB2--CELF4^ENST00000373237.4" ; Parent "PSMB2--CELF4^PSMB2^ENSG00000126067.12" ; ccdsid "CCDS394.1" ; exon_id "ENSE00001930801.2" ; exon_number 1 ; gene_id "PSMB2--CELF4^PSMB2^ENSG00000126067.12" ; gene_name PSMB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004169.3" ; havana_transcript "OTTHUMT00000012016.2" ; hgnc_id "HGNC:9539" ; level 2 ; orig_coord_info "chr1,35641342,35641432,-" ; protein_id "ENSP00000362334.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMB2--CELF4^ENST00000373237.4" ; transcript_name "PSMB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PXN--PLA2G1B HAVANA gene 1001 20185 . + . FI_gene_label "PXN^ENSG00000089159.17" ; ID "PXN--PLA2G1B^PXN^ENSG00000089159.17" ; ccdsid "CCDS44997.1" ; exon_id "ENSE00002244973.1" ; exon_number 1 ; gene_id "PXN--PLA2G1B^PXN^ENSG00000089159.17" ; gene_name PXN ; gene_type protein_coding ; havana_gene "OTTHUMG00000169169.9" ; havana_transcript "OTTHUMT00000402679.4" ; hgnc_id "HGNC:9718" ; level 2 ; orig_coord_info "chr12,120265617,120265629,-" ; protein_id "ENSP00000228307.7" ; tag basic appris_principal_4 CCDS ; transcript_id "PXN--PLA2G1B^ENST00000228307.11" ; transcript_name "PXN-201" ; transcript_support_level 1 ; transcript_type protein_coding
PXN--PLA2G1B HAVANA mRNA 1001 20185 . + . FI_gene_label "PXN^ENSG00000089159.17" ; ID "PXN--PLA2G1B^ENST00000228307.11" ; Parent "PXN--PLA2G1B^PXN^ENSG00000089159.17" ; ccdsid "CCDS44997.1" ; exon_id "ENSE00002244973.1" ; exon_number 1 ; gene_id "PXN--PLA2G1B^PXN^ENSG00000089159.17" ; gene_name PXN ; gene_type protein_coding ; havana_gene "OTTHUMG00000169169.9" ; havana_transcript "OTTHUMT00000402679.4" ; hgnc_id "HGNC:9718" ; level 2 ; orig_coord_info "chr12,120265617,120265629,-" ; protein_id "ENSP00000228307.7" ; tag basic appris_principal_4 CCDS ; transcript_id "PXN--PLA2G1B^ENST00000228307.11" ; transcript_name "PXN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PXN--PLA2G1B HAVANA gene 23194 26616 . + . FI_gene_label "PLA2G1B^ENSG00000170890.14" ; ID "PXN--PLA2G1B^PLA2G1B^ENSG00000170890.14" ; ccdsid "CCDS9195.1" ; exon_id "ENSE00002273546.1" ; exon_number 1 ; gene_id "PXN--PLA2G1B^PLA2G1B^ENSG00000170890.14" ; gene_name PLA2G1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169343.2" ; havana_transcript "OTTHUMT00000403626.2" ; hgnc_id "HGNC:9030" ; level 2 ; orig_coord_info "chr12,120327720,120327753,-" ; protein_id "ENSP00000312286.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PXN--PLA2G1B^ENST00000308366.9" ; transcript_name "PLA2G1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PXN--PLA2G1B HAVANA mRNA 23194 26616 . + . FI_gene_label "PLA2G1B^ENSG00000170890.14" ; ID "PXN--PLA2G1B^ENST00000308366.9" ; Parent "PXN--PLA2G1B^PLA2G1B^ENSG00000170890.14" ; ccdsid "CCDS9195.1" ; exon_id "ENSE00002273546.1" ; exon_number 1 ; gene_id "PXN--PLA2G1B^PLA2G1B^ENSG00000170890.14" ; gene_name PLA2G1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169343.2" ; havana_transcript "OTTHUMT00000403626.2" ; hgnc_id "HGNC:9030" ; level 2 ; orig_coord_info "chr12,120327720,120327753,-" ; protein_id "ENSP00000312286.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PXN--PLA2G1B^ENST00000308366.9" ; transcript_name "PLA2G1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SDHAF3--AC025614.2 HAVANA gene 1026 4919 . + . FI_gene_label "SDHAF3^ENSG00000196636.8" ; ID "SDHAF3--AC025614.2^SDHAF3^ENSG00000196636.8" ; exon_id "ENSE00001312947.6" ; exon_number 1 ; gene_id "SDHAF3--AC025614.2^SDHAF3^ENSG00000196636.8" ; gene_name SDHAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154064.7" ; havana_transcript "OTTHUMT00000333686.3" ; hgnc_id "HGNC:21752" ; level 1 ; orig_coord_info "chr7,97117724,97117897,+" ; protein_id "ENSP00000353548.4" ; tag basic exp_conf ; transcript_id "SDHAF3--AC025614.2^ENST00000360382.4" ; transcript_name "SDHAF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
SDHAF3--AC025614.2 HAVANA mRNA 1026 4919 . + . FI_gene_label "SDHAF3^ENSG00000196636.8" ; ID "SDHAF3--AC025614.2^ENST00000360382.4" ; Parent "SDHAF3--AC025614.2^SDHAF3^ENSG00000196636.8" ; exon_id "ENSE00001312947.6" ; exon_number 1 ; gene_id "SDHAF3--AC025614.2^SDHAF3^ENSG00000196636.8" ; gene_name SDHAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154064.7" ; havana_transcript "OTTHUMT00000333686.3" ; hgnc_id "HGNC:21752" ; level 1 ; orig_coord_info "chr7,97117724,97117897,+" ; protein_id "ENSP00000353548.4" ; tag basic exp_conf ; transcript_id "SDHAF3--AC025614.2^ENST00000360382.4" ; transcript_name "SDHAF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SDHAF3--LINC01985 HAVANA gene 1026 4919 . + . FI_gene_label "SDHAF3^ENSG00000196636.8" ; ID "SDHAF3--LINC01985^SDHAF3^ENSG00000196636.8" ; exon_id "ENSE00001312947.6" ; exon_number 1 ; gene_id "SDHAF3--LINC01985^SDHAF3^ENSG00000196636.8" ; gene_name SDHAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154064.7" ; havana_transcript "OTTHUMT00000333686.3" ; hgnc_id "HGNC:21752" ; level 1 ; orig_coord_info "chr7,97117724,97117897,+" ; protein_id "ENSP00000353548.4" ; tag basic exp_conf ; transcript_id "SDHAF3--LINC01985^ENST00000360382.4" ; transcript_name "SDHAF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
SDHAF3--LINC01985 HAVANA mRNA 1026 4919 . + . FI_gene_label "SDHAF3^ENSG00000196636.8" ; ID "SDHAF3--LINC01985^ENST00000360382.4" ; Parent "SDHAF3--LINC01985^SDHAF3^ENSG00000196636.8" ; exon_id "ENSE00001312947.6" ; exon_number 1 ; gene_id "SDHAF3--LINC01985^SDHAF3^ENSG00000196636.8" ; gene_name SDHAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154064.7" ; havana_transcript "OTTHUMT00000333686.3" ; hgnc_id "HGNC:21752" ; level 1 ; orig_coord_info "chr7,97117724,97117897,+" ; protein_id "ENSP00000353548.4" ; tag basic exp_conf ; transcript_id "SDHAF3--LINC01985^ENST00000360382.4" ; transcript_name "SDHAF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC30A7--UROC1 HAVANA gene 22789 41697 . + . FI_gene_label "UROC1^ENSG00000159650.9" ; ID "SLC30A7--UROC1^UROC1^ENSG00000159650.9" ; ccdsid "CCDS3038.1" ; exon_id "ENSE00002026885.1" ; exon_number 1 ; gene_id "SLC30A7--UROC1^UROC1^ENSG00000159650.9" ; gene_name UROC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162753.3" ; havana_transcript "OTTHUMT00000370325.3" ; hgnc_id "HGNC:26444" ; level 2 ; orig_coord_info "chr3,126517594,126517719,-" ; protein_id "ENSP00000290868.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC30A7--UROC1^ENST00000290868.7" ; transcript_name "UROC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC30A7--UROC1 HAVANA mRNA 22789 41697 . + . FI_gene_label "UROC1^ENSG00000159650.9" ; ID "SLC30A7--UROC1^ENST00000290868.7" ; Parent "SLC30A7--UROC1^UROC1^ENSG00000159650.9" ; ccdsid "CCDS3038.1" ; exon_id "ENSE00002026885.1" ; exon_number 1 ; gene_id "SLC30A7--UROC1^UROC1^ENSG00000159650.9" ; gene_name UROC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162753.3" ; havana_transcript "OTTHUMT00000370325.3" ; hgnc_id "HGNC:26444" ; level 2 ; orig_coord_info "chr3,126517594,126517719,-" ; protein_id "ENSP00000290868.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC30A7--UROC1^ENST00000290868.7" ; transcript_name "UROC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC30A7--UROC1 HAVANA gene 1015 19788 . + . FI_gene_label "SLC30A7^ENSG00000162695.12" ; ID "SLC30A7--UROC1^SLC30A7^ENSG00000162695.12" ; ccdsid "CCDS776.1" ; exon_id "ENSE00001451864.4" ; exon_number 1 ; gene_id "SLC30A7--UROC1^SLC30A7^ENSG00000162695.12" ; gene_name SLC30A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011815.3" ; havana_transcript "OTTHUMT00000032712.2" ; hgnc_id "HGNC:19306" ; level 2 ; orig_coord_info "chr1,100896263,100896342,+" ; protein_id "ENSP00000350278.4" ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC30A7--UROC1^ENST00000357650.9" ; transcript_name "SLC30A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC30A7--UROC1 HAVANA mRNA 1015 19788 . + . FI_gene_label "SLC30A7^ENSG00000162695.12" ; ID "SLC30A7--UROC1^ENST00000357650.9" ; Parent "SLC30A7--UROC1^SLC30A7^ENSG00000162695.12" ; ccdsid "CCDS776.1" ; exon_id "ENSE00001451864.4" ; exon_number 1 ; gene_id "SLC30A7--UROC1^SLC30A7^ENSG00000162695.12" ; gene_name SLC30A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011815.3" ; havana_transcript "OTTHUMT00000032712.2" ; hgnc_id "HGNC:19306" ; level 2 ; orig_coord_info "chr1,100896263,100896342,+" ; protein_id "ENSP00000350278.4" ; tag alternative_3_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC30A7--UROC1^ENST00000357650.9" ; transcript_name "SLC30A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC34A2--ROS1 HAVANA gene 21924 69303 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "SLC34A2--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SLC34A2--ROS1 HAVANA mRNA 21924 69303 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "SLC34A2--ROS1^ENST00000368507.8" ; Parent "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "SLC34A2--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SLC34A2--ROS1 HAVANA gene 2897 18923 . + . FI_gene_label "SLC34A2^ENSG00000157765.13" ; ID "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; ccdsid "CCDS3435.1" ; exon_id "ENSE00001034812.5" ; exon_number 2 ; gene_id "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; gene_name SLC34A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097757.6" ; havana_transcript "OTTHUMT00000214990.2" ; hgnc_id "HGNC:11020" ; level 2 ; orig_coord_info "chr4,25662501,25662612,+" ; protein_id "ENSP00000371483.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC34A2--ROS1^ENST00000382051.8" ; transcript_name "SLC34A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC34A2--ROS1 HAVANA mRNA 2897 18923 . + . FI_gene_label "SLC34A2^ENSG00000157765.13" ; ID "SLC34A2--ROS1^ENST00000382051.8" ; Parent "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; ccdsid "CCDS3435.1" ; exon_id "ENSE00001034812.5" ; exon_number 2 ; gene_id "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; gene_name SLC34A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097757.6" ; havana_transcript "OTTHUMT00000214990.2" ; hgnc_id "HGNC:11020" ; level 2 ; orig_coord_info "chr4,25662501,25662612,+" ; protein_id "ENSP00000371483.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC34A2--ROS1^ENST00000382051.8" ; transcript_name "SLC34A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMARCA2--TRIM72 HAVANA gene 51843 62846 . + . FI_gene_label "SMARCA2^ENSG00000080503.24" ; ID "SMARCA2--TRIM72^SMARCA2^ENSG00000080503.24" ; ccdsid "CCDS75808.1" ; exon_id "ENSE00001401989.1" ; exon_number 1 ; gene_id "SMARCA2--TRIM72^SMARCA2^ENSG00000080503.24" ; gene_name SMARCA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019445.14" ; havana_transcript "OTTHUMT00000051503.3" ; hgnc_id "HGNC:11098" ; level 2 ; orig_coord_info "chr9,2158976,2158978,+" ; protein_id "ENSP00000305411.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "SMARCA2--TRIM72^ENST00000302401.8" ; transcript_name "SMARCA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
SMARCA2--TRIM72 HAVANA mRNA 51843 62846 . + . FI_gene_label "SMARCA2^ENSG00000080503.24" ; ID "SMARCA2--TRIM72^ENST00000302401.8" ; Parent "SMARCA2--TRIM72^SMARCA2^ENSG00000080503.24" ; ccdsid "CCDS75808.1" ; exon_id "ENSE00001401989.1" ; exon_number 1 ; gene_id "SMARCA2--TRIM72^SMARCA2^ENSG00000080503.24" ; gene_name SMARCA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019445.14" ; havana_transcript "OTTHUMT00000051503.3" ; hgnc_id "HGNC:11098" ; level 2 ; orig_coord_info "chr9,2158976,2158978,+" ; protein_id "ENSP00000305411.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "SMARCA2--TRIM72^ENST00000302401.8" ; transcript_name "SMARCA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SMARCA2--TRIM72 HAVANA gene 65875 78808 . + . FI_gene_label "TRIM72^ENSG00000177238.14" ; ID "SMARCA2--TRIM72^TRIM72^ENSG00000177238.14" ; ccdsid "CCDS32437.1" ; exon_id "ENSE00001326837.4" ; exon_number 2 ; gene_id "SMARCA2--TRIM72^TRIM72^ENSG00000177238.14" ; gene_name TRIM72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176754.3" ; havana_transcript "OTTHUMT00000433567.3" ; hgnc_id "HGNC:32671" ; level 2 ; orig_coord_info "chr16,31214739,31215128,+" ; protein_id "ENSP00000312675.3" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCA2--TRIM72^ENST00000322122.8" ; transcript_name "TRIM72-201" ; transcript_support_level 2 ; transcript_type protein_coding
SMARCA2--TRIM72 HAVANA mRNA 65875 78808 . + . FI_gene_label "TRIM72^ENSG00000177238.14" ; ID "SMARCA2--TRIM72^ENST00000322122.8" ; Parent "SMARCA2--TRIM72^TRIM72^ENSG00000177238.14" ; ccdsid "CCDS32437.1" ; exon_id "ENSE00001326837.4" ; exon_number 2 ; gene_id "SMARCA2--TRIM72^TRIM72^ENSG00000177238.14" ; gene_name TRIM72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176754.3" ; havana_transcript "OTTHUMT00000433567.3" ; hgnc_id "HGNC:32671" ; level 2 ; orig_coord_info "chr16,31214739,31215128,+" ; protein_id "ENSP00000312675.3" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMARCA2--TRIM72^ENST00000322122.8" ; transcript_name "TRIM72-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ST7--AC006001.3 HAVANA gene 1090 33031 . + . FI_gene_label "ST7^ENSG00000004866.22" ; ID "ST7--AC006001.3^ST7^ENSG00000004866.22" ; ccdsid "CCDS5770.1" ; exon_id "ENSE00001226748.3" ; exon_number 1 ; gene_id "ST7--AC006001.3^ST7^ENSG00000004866.22" ; gene_name ST7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023888.24" ; havana_transcript "OTTHUMT00000141622.1" ; hgnc_id "HGNC:11351" ; level 2 ; orig_coord_info "chr7,116953541,116953691,+" ; protein_id "ENSP00000265437.5" ; tag basic CCDS ; transcript_id "ST7--AC006001.3^ENST00000265437.9" ; transcript_name "ST7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ST7--AC006001.3 HAVANA mRNA 1090 33031 . + . FI_gene_label "ST7^ENSG00000004866.22" ; ID "ST7--AC006001.3^ENST00000265437.9" ; Parent "ST7--AC006001.3^ST7^ENSG00000004866.22" ; ccdsid "CCDS5770.1" ; exon_id "ENSE00001226748.3" ; exon_number 1 ; gene_id "ST7--AC006001.3^ST7^ENSG00000004866.22" ; gene_name ST7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023888.24" ; havana_transcript "OTTHUMT00000141622.1" ; hgnc_id "HGNC:11351" ; level 2 ; orig_coord_info "chr7,116953541,116953691,+" ; protein_id "ENSP00000265437.5" ; tag basic CCDS ; transcript_id "ST7--AC006001.3^ENST00000265437.9" ; transcript_name "ST7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TENT4B--AF254982.1 HAVANA gene 4479 18797 . + . FI_gene_label "TENT4B^ENSG00000121274.14" ; ID "TENT4B--AF254982.1^TENT4B^ENSG00000121274.14" ; exon_id "ENSE00002663877.1" ; exon_number 1 ; gene_id "TENT4B--AF254982.1^TENT4B^ENSG00000121274.14" ; gene_name TENT4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000173452.6" ; havana_transcript "OTTHUMT00000423152.3" ; hgnc_id "HGNC:30758" ; level 2 ; orig_coord_info "chr16,50214226,50214267,+" ; protein_id "ENSP00000350054.4" ; tag NMD_likely_if_extended mRNA_start_NF cds_start_NF ; transcript_id "TENT4B--AF254982.1^ENST00000357464.4" ; transcript_name "TENT4B-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
TENT4B--AF254982.1 HAVANA mRNA 4479 18797 . + . FI_gene_label "TENT4B^ENSG00000121274.14" ; ID "TENT4B--AF254982.1^ENST00000357464.4" ; Parent "TENT4B--AF254982.1^TENT4B^ENSG00000121274.14" ; exon_id "ENSE00002663877.1" ; exon_number 1 ; gene_id "TENT4B--AF254982.1^TENT4B^ENSG00000121274.14" ; gene_name TENT4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000173452.6" ; havana_transcript "OTTHUMT00000423152.3" ; hgnc_id "HGNC:30758" ; level 2 ; orig_coord_info "chr16,50214226,50214267,+" ; protein_id "ENSP00000350054.4" ; tag NMD_likely_if_extended mRNA_start_NF cds_start_NF ; transcript_id "TENT4B--AF254982.1^ENST00000357464.4" ; transcript_name "TENT4B-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TENT4B--AP001464.1 HAVANA gene 4479 18797 . + . FI_gene_label "TENT4B^ENSG00000121274.14" ; ID "TENT4B--AP001464.1^TENT4B^ENSG00000121274.14" ; exon_id "ENSE00002663877.1" ; exon_number 1 ; gene_id "TENT4B--AP001464.1^TENT4B^ENSG00000121274.14" ; gene_name TENT4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000173452.6" ; havana_transcript "OTTHUMT00000423152.3" ; hgnc_id "HGNC:30758" ; level 2 ; orig_coord_info "chr16,50214226,50214267,+" ; protein_id "ENSP00000350054.4" ; tag NMD_likely_if_extended mRNA_start_NF cds_start_NF ; transcript_id "TENT4B--AP001464.1^ENST00000357464.4" ; transcript_name "TENT4B-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
TENT4B--AP001464.1 HAVANA mRNA 4479 18797 . + . FI_gene_label "TENT4B^ENSG00000121274.14" ; ID "TENT4B--AP001464.1^ENST00000357464.4" ; Parent "TENT4B--AP001464.1^TENT4B^ENSG00000121274.14" ; exon_id "ENSE00002663877.1" ; exon_number 1 ; gene_id "TENT4B--AP001464.1^TENT4B^ENSG00000121274.14" ; gene_name TENT4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000173452.6" ; havana_transcript "OTTHUMT00000423152.3" ; hgnc_id "HGNC:30758" ; level 2 ; orig_coord_info "chr16,50214226,50214267,+" ; protein_id "ENSP00000350054.4" ; tag NMD_likely_if_extended mRNA_start_NF cds_start_NF ; transcript_id "TENT4B--AP001464.1^ENST00000357464.4" ; transcript_name "TENT4B-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF2--SLC1A1 HAVANA gene 28969 44387 . + . FI_gene_label "SLC1A1^ENSG00000106688.12" ; ID "UHRF2--SLC1A1^SLC1A1^ENSG00000106688.12" ; ccdsid "CCDS6452.1" ; exon_id "ENSE00002250590.2" ; exon_number 1 ; gene_id "UHRF2--SLC1A1^SLC1A1^ENSG00000106688.12" ; gene_name SLC1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019468.3" ; havana_transcript "OTTHUMT00000051571.2" ; hgnc_id "HGNC:10939" ; level 2 ; orig_coord_info "chr9,4490680,4490770,+" ; protein_id "ENSP00000262352.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF2--SLC1A1^ENST00000262352.8" ; transcript_name "SLC1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF2--SLC1A1 HAVANA mRNA 28969 44387 . + . FI_gene_label "SLC1A1^ENSG00000106688.12" ; ID "UHRF2--SLC1A1^ENST00000262352.8" ; Parent "UHRF2--SLC1A1^SLC1A1^ENSG00000106688.12" ; ccdsid "CCDS6452.1" ; exon_id "ENSE00002250590.2" ; exon_number 1 ; gene_id "UHRF2--SLC1A1^SLC1A1^ENSG00000106688.12" ; gene_name SLC1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019468.3" ; havana_transcript "OTTHUMT00000051571.2" ; hgnc_id "HGNC:10939" ; level 2 ; orig_coord_info "chr9,4490680,4490770,+" ; protein_id "ENSP00000262352.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF2--SLC1A1^ENST00000262352.8" ; transcript_name "SLC1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF2--SLC1A1 HAVANA gene 1049 25968 . + . FI_gene_label "UHRF2^ENSG00000147854.17" ; ID "UHRF2--SLC1A1^UHRF2^ENSG00000147854.17" ; ccdsid "CCDS6469.1" ; exon_id "ENSE00001885825.2" ; exon_number 1 ; gene_id "UHRF2--SLC1A1^UHRF2^ENSG00000147854.17" ; gene_name UHRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019521.9" ; havana_transcript "OTTHUMT00000051665.4" ; hgnc_id "HGNC:12557" ; level 2 ; orig_coord_info "chr9,6413491,6413643,+" ; protein_id "ENSP00000276893.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF2--SLC1A1^ENST00000276893.10" ; transcript_name "UHRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF2--SLC1A1 HAVANA mRNA 1049 25968 . + . FI_gene_label "UHRF2^ENSG00000147854.17" ; ID "UHRF2--SLC1A1^ENST00000276893.10" ; Parent "UHRF2--SLC1A1^UHRF2^ENSG00000147854.17" ; ccdsid "CCDS6469.1" ; exon_id "ENSE00001885825.2" ; exon_number 1 ; gene_id "UHRF2--SLC1A1^UHRF2^ENSG00000147854.17" ; gene_name UHRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019521.9" ; havana_transcript "OTTHUMT00000051665.4" ; hgnc_id "HGNC:12557" ; level 2 ; orig_coord_info "chr9,6413491,6413643,+" ; protein_id "ENSP00000276893.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF2--SLC1A1^ENST00000276893.10" ; transcript_name "UHRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XYLB--GOLGA4 HAVANA gene 1026 24264 . + . FI_gene_label "XYLB^ENSG00000093217.11" ; ID "XYLB--GOLGA4^XYLB^ENSG00000093217.11" ; ccdsid "CCDS2678.1" ; exon_id "ENSE00000825674.5" ; exon_number 1 ; gene_id "XYLB--GOLGA4^XYLB^ENSG00000093217.11" ; gene_name XYLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000131294.7" ; havana_transcript "OTTHUMT00000254062.3" ; hgnc_id "HGNC:12839" ; level 2 ; orig_coord_info "chr3,38346869,38346925,+" ; protein_id "ENSP00000207870.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XYLB--GOLGA4^ENST00000207870.8" ; transcript_name "XYLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
XYLB--GOLGA4 HAVANA mRNA 1026 24264 . + . FI_gene_label "XYLB^ENSG00000093217.11" ; ID "XYLB--GOLGA4^ENST00000207870.8" ; Parent "XYLB--GOLGA4^XYLB^ENSG00000093217.11" ; ccdsid "CCDS2678.1" ; exon_id "ENSE00000825674.5" ; exon_number 1 ; gene_id "XYLB--GOLGA4^XYLB^ENSG00000093217.11" ; gene_name XYLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000131294.7" ; havana_transcript "OTTHUMT00000254062.3" ; hgnc_id "HGNC:12839" ; level 2 ; orig_coord_info "chr3,38346869,38346925,+" ; protein_id "ENSP00000207870.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "XYLB--GOLGA4^ENST00000207870.8" ; transcript_name "XYLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XYLB--GOLGA4 HAVANA gene 29847 67496 . + . FI_gene_label "GOLGA4^ENSG00000144674.16" ; ID "XYLB--GOLGA4^GOLGA4^ENSG00000144674.16" ; ccdsid "CCDS54564.1" ; exon_id "ENSE00001776192.1" ; exon_number 1 ; gene_id "XYLB--GOLGA4^GOLGA4^ENSG00000144674.16" ; gene_name GOLGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130799.7" ; havana_transcript "OTTHUMT00000342257.2" ; hgnc_id "HGNC:4427" ; level 2 ; orig_coord_info "chr3,37243551,37243622,+" ; protein_id "ENSP00000349305.4" ; tag basic appris_principal_4 CCDS ; transcript_id "XYLB--GOLGA4^ENST00000356847.8" ; transcript_name "GOLGA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
XYLB--GOLGA4 HAVANA mRNA 29847 67496 . + . FI_gene_label "GOLGA4^ENSG00000144674.16" ; ID "XYLB--GOLGA4^ENST00000356847.8" ; Parent "XYLB--GOLGA4^GOLGA4^ENSG00000144674.16" ; ccdsid "CCDS54564.1" ; exon_id "ENSE00001776192.1" ; exon_number 1 ; gene_id "XYLB--GOLGA4^GOLGA4^ENSG00000144674.16" ; gene_name GOLGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130799.7" ; havana_transcript "OTTHUMT00000342257.2" ; hgnc_id "HGNC:4427" ; level 2 ; orig_coord_info "chr3,37243551,37243622,+" ; protein_id "ENSP00000349305.4" ; tag basic appris_principal_4 CCDS ; transcript_id "XYLB--GOLGA4^ENST00000356847.8" ; transcript_name "GOLGA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZBTB40--ZMYM4 HAVANA gene 28787 59373 . + . FI_gene_label "ZMYM4^ENSG00000146463.12" ; ID "ZBTB40--ZMYM4^ZMYM4^ENSG00000146463.12" ; ccdsid "CCDS389.1" ; exon_id "ENSE00001670766.2" ; exon_number 1 ; gene_id "ZBTB40--ZMYM4^ZMYM4^ENSG00000146463.12" ; gene_name ZMYM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004241.6" ; havana_transcript "OTTHUMT00000012207.4" ; hgnc_id "HGNC:13055" ; level 2 ; orig_coord_info "chr1,35269047,35269085,+" ; protein_id "ENSP00000322915.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZBTB40--ZMYM4^ENST00000314607.11" ; transcript_name "ZMYM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZBTB40--ZMYM4 HAVANA mRNA 28787 59373 . + . FI_gene_label "ZMYM4^ENSG00000146463.12" ; ID "ZBTB40--ZMYM4^ENST00000314607.11" ; Parent "ZBTB40--ZMYM4^ZMYM4^ENSG00000146463.12" ; ccdsid "CCDS389.1" ; exon_id "ENSE00001670766.2" ; exon_number 1 ; gene_id "ZBTB40--ZMYM4^ZMYM4^ENSG00000146463.12" ; gene_name ZMYM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004241.6" ; havana_transcript "OTTHUMT00000012207.4" ; hgnc_id "HGNC:13055" ; level 2 ; orig_coord_info "chr1,35269047,35269085,+" ; protein_id "ENSP00000322915.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZBTB40--ZMYM4^ENST00000314607.11" ; transcript_name "ZMYM4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZBTB40--ZMYM4 ENSEMBL gene 2178 25786 . + . FI_gene_label "ZBTB40^ENSG00000184677.18" ; ID "ZBTB40--ZMYM4^ZBTB40^ENSG00000184677.18" ; ccdsid "CCDS81278.1" ; exon_id "ENSE00001464145.1" ; exon_number 2 ; gene_id "ZBTB40--ZMYM4^ZBTB40^ENSG00000184677.18" ; gene_name ZBTB40 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002897.4" ; hgnc_id "HGNC:29045" ; level 3 ; orig_coord_info "chr1,22489949,22490645,+" ; protein_id "ENSP00000363782.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZBTB40--ZMYM4^ENST00000374651.8" ; transcript_name "ZBTB40-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZBTB40--ZMYM4 ENSEMBL mRNA 2178 25786 . + . FI_gene_label "ZBTB40^ENSG00000184677.18" ; ID "ZBTB40--ZMYM4^ENST00000374651.8" ; Parent "ZBTB40--ZMYM4^ZBTB40^ENSG00000184677.18" ; ccdsid "CCDS81278.1" ; exon_id "ENSE00001464145.1" ; exon_number 2 ; gene_id "ZBTB40--ZMYM4^ZBTB40^ENSG00000184677.18" ; gene_name ZBTB40 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002897.4" ; hgnc_id "HGNC:29045" ; level 3 ; orig_coord_info "chr1,22489949,22490645,+" ; protein_id "ENSP00000363782.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZBTB40--ZMYM4^ENST00000374651.8" ; transcript_name "ZBTB40-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFP62--SIMC1 HAVANA gene 20340 27011 . + . FI_gene_label "SIMC1^ENSG00000170085.18" ; ID "ZFP62--SIMC1^SIMC1^ENSG00000170085.18" ; ccdsid "CCDS78090.1" ; exon_id "ENSE00001327990.5" ; exon_number 1 ; gene_id "ZFP62--SIMC1^SIMC1^ENSG00000170085.18" ; gene_name SIMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130663.6" ; havana_transcript "OTTHUMT00000329100.1" ; hgnc_id "HGNC:24779" ; level 2 ; orig_coord_info "chr5,176313425,176313484,+" ; protein_id "ENSP00000331311.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZFP62--SIMC1^ENST00000332772.4" ; transcript_name "SIMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFP62--SIMC1 HAVANA mRNA 20340 27011 . + . FI_gene_label "SIMC1^ENSG00000170085.18" ; ID "ZFP62--SIMC1^ENST00000332772.4" ; Parent "ZFP62--SIMC1^SIMC1^ENSG00000170085.18" ; ccdsid "CCDS78090.1" ; exon_id "ENSE00001327990.5" ; exon_number 1 ; gene_id "ZFP62--SIMC1^SIMC1^ENSG00000170085.18" ; gene_name SIMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130663.6" ; havana_transcript "OTTHUMT00000329100.1" ; hgnc_id "HGNC:24779" ; level 2 ; orig_coord_info "chr5,176313425,176313484,+" ; protein_id "ENSP00000331311.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZFP62--SIMC1^ENST00000332772.4" ; transcript_name "SIMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFP62--SIMC1 HAVANA gene 1010 7208 . + . FI_gene_label "ZFP62^ENSG00000196670.14" ; ID "ZFP62--SIMC1^ZFP62^ENSG00000196670.14" ; ccdsid "CCDS54955.1" ; exon_id "ENSE00002055349.2" ; exon_number 1 ; gene_id "ZFP62--SIMC1^ZFP62^ENSG00000196670.14" ; gene_name ZFP62 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162273.4" ; havana_transcript "OTTHUMT00000368386.2" ; hgnc_id "HGNC:23241" ; level 2 ; orig_coord_info "chr5,180861219,180861219,-" ; protein_id "ENSP00000423820.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZFP62--SIMC1^ENST00000502412.2" ; transcript_name "ZFP62-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZFP62--SIMC1 HAVANA mRNA 1010 7208 . + . FI_gene_label "ZFP62^ENSG00000196670.14" ; ID "ZFP62--SIMC1^ENST00000502412.2" ; Parent "ZFP62--SIMC1^ZFP62^ENSG00000196670.14" ; ccdsid "CCDS54955.1" ; exon_id "ENSE00002055349.2" ; exon_number 1 ; gene_id "ZFP62--SIMC1^ZFP62^ENSG00000196670.14" ; gene_name ZFP62 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162273.4" ; havana_transcript "OTTHUMT00000368386.2" ; hgnc_id "HGNC:23241" ; level 2 ; orig_coord_info "chr5,180861219,180861219,-" ; protein_id "ENSP00000423820.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZFP62--SIMC1^ENST00000502412.2" ; transcript_name "ZFP62-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF559--ZNF177 HAVANA gene 1408 9455 . + . FI_gene_label "ZNF559^ENSG00000188321.14" ; ID "ZNF559--ZNF177^ZNF559^ENSG00000188321.14" ; ccdsid "CCDS59349.1" ; exon_id "ENSE00003679825.1" ; exon_number 4 ; gene_id "ZNF559--ZNF177^ZNF559^ENSG00000188321.14" ; gene_name ZNF559 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179942.5" ; havana_transcript "OTTHUMT00000449015.1" ; hgnc_id "HGNC:28197" ; level 2 ; orig_coord_info "chr19,9338550,9338582,+" ; protein_id "ENSP00000325393.7" ; tag basic CCDS ; transcript_id "ZNF559--ZNF177^ENST00000317221.11" ; transcript_name "ZNF559-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF559--ZNF177 HAVANA mRNA 1408 9455 . + . FI_gene_label "ZNF559^ENSG00000188321.14" ; ID "ZNF559--ZNF177^ENST00000317221.11" ; Parent "ZNF559--ZNF177^ZNF559^ENSG00000188321.14" ; ccdsid "CCDS59349.1" ; exon_id "ENSE00003679825.1" ; exon_number 4 ; gene_id "ZNF559--ZNF177^ZNF559^ENSG00000188321.14" ; gene_name ZNF559 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179942.5" ; havana_transcript "OTTHUMT00000449015.1" ; hgnc_id "HGNC:28197" ; level 2 ; orig_coord_info "chr19,9338550,9338582,+" ; protein_id "ENSP00000325393.7" ; tag basic CCDS ; transcript_id "ZNF559--ZNF177^ENST00000317221.11" ; transcript_name "ZNF559-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF559--ZNF177 HAVANA gene 15870 24411 . + . FI_gene_label "ZNF177^ENSG00000188629.13" ; ID "ZNF559--ZNF177^ZNF177^ENSG00000188629.13" ; ccdsid "CCDS12212.1" ; exon_id "ENSE00003470201.1" ; exon_number 5 ; gene_id "ZNF559--ZNF177^ZNF177^ENSG00000188629.13" ; gene_name ZNF177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179943.2" ; havana_transcript "OTTHUMT00000449026.1" ; hgnc_id "HGNC:12966" ; level 2 ; orig_coord_info "chr19,9378312,9378344,+" ; protein_id "ENSP00000341497.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF559--ZNF177^ENST00000343499.8" ; transcript_name "ZNF177-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF559--ZNF177 HAVANA mRNA 15870 24411 . + . FI_gene_label "ZNF177^ENSG00000188629.13" ; ID "ZNF559--ZNF177^ENST00000343499.8" ; Parent "ZNF559--ZNF177^ZNF177^ENSG00000188629.13" ; ccdsid "CCDS12212.1" ; exon_id "ENSE00003470201.1" ; exon_number 5 ; gene_id "ZNF559--ZNF177^ZNF177^ENSG00000188629.13" ; gene_name ZNF177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179943.2" ; havana_transcript "OTTHUMT00000449026.1" ; hgnc_id "HGNC:12966" ; level 2 ; orig_coord_info "chr19,9378312,9378344,+" ; protein_id "ENSP00000341497.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF559--ZNF177^ENST00000343499.8" ; transcript_name "ZNF177-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC002066.1--SYK HAVANA gene 3257 6720 . + . FI_gene_label "AC002066.1^ENSG00000237813.4" ; ID "AC002066.1--SYK^AC002066.1^ENSG00000237813.4" ; exon_id "ENSE00001801513.1" ; exon_number 1 ; gene_id "AC002066.1--SYK^AC002066.1^ENSG00000237813.4" ; gene_name "AC002066.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000066052.5" ; havana_transcript "OTTHUMT00000141446.1" ; level 1 ; orig_coord_info "chr7,116465189,116465276,-" ; tag basic exp_conf ; transcript_id "AC002066.1--SYK^ENST00000439070.1" ; transcript_name "AC002066.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
AC002066.1--SYK HAVANA RNA 3257 6720 . + . FI_gene_label "AC002066.1^ENSG00000237813.4" ; ID "AC002066.1--SYK^ENST00000439070.1" ; Parent "AC002066.1--SYK^AC002066.1^ENSG00000237813.4" ; exon_id "ENSE00001801513.1" ; exon_number 1 ; gene_id "AC002066.1--SYK^AC002066.1^ENSG00000237813.4" ; gene_name "AC002066.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000066052.5" ; havana_transcript "OTTHUMT00000141446.1" ; level 1 ; orig_coord_info "chr7,116465189,116465276,-" ; tag basic exp_conf ; transcript_id "AC002066.1--SYK^ENST00000439070.1" ; transcript_name "AC002066.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC004917.1--SLC26A3 HAVANA gene 8683 14839 . + . FI_gene_label "AC004917.1^ENSG00000243797.6" ; ID "AC004917.1--SLC26A3^AC004917.1^ENSG00000243797.6" ; exon_id "ENSE00001884573.1" ; exon_number 1 ; gene_id "AC004917.1--SLC26A3^AC004917.1^ENSG00000243797.6" ; gene_name "AC004917.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000157591.2" ; havana_transcript "OTTHUMT00000349234.1" ; level 2 ; orig_coord_info "chr7,106504709,106504839,-" ; tag basic ; transcript_id "AC004917.1--SLC26A3^ENST00000475791.5" ; transcript_name "AC004917.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
AC004917.1--SLC26A3 HAVANA RNA 8683 14839 . + . FI_gene_label "AC004917.1^ENSG00000243797.6" ; ID "AC004917.1--SLC26A3^ENST00000475791.5" ; Parent "AC004917.1--SLC26A3^AC004917.1^ENSG00000243797.6" ; exon_id "ENSE00001884573.1" ; exon_number 1 ; gene_id "AC004917.1--SLC26A3^AC004917.1^ENSG00000243797.6" ; gene_name "AC004917.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000157591.2" ; havana_transcript "OTTHUMT00000349234.1" ; level 2 ; orig_coord_info "chr7,106504709,106504839,-" ; tag basic ; transcript_id "AC004917.1--SLC26A3^ENST00000475791.5" ; transcript_name "AC004917.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC005050.1--SLC26A3 HAVANA gene 1001 5735 . + . FI_gene_label "AC005050.1^ENSG00000267052.3" ; ID "AC005050.1--SLC26A3^AC005050.1^ENSG00000267052.3" ; exon_id "ENSE00002966949.1" ; exon_number 1 ; gene_id "AC005050.1--SLC26A3^AC005050.1^ENSG00000267052.3" ; gene_name "AC005050.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182225.4" ; havana_transcript "OTTHUMT00000460143.2" ; level 2 ; orig_coord_info "chr7,106598754,106598908,-" ; tag TAGENE ; transcript_id "AC005050.1--SLC26A3^ENST00000591803.2" ; transcript_name "AC005050.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
AC005050.1--SLC26A3 HAVANA RNA 1001 5735 . + . FI_gene_label "AC005050.1^ENSG00000267052.3" ; ID "AC005050.1--SLC26A3^ENST00000591803.2" ; Parent "AC005050.1--SLC26A3^AC005050.1^ENSG00000267052.3" ; exon_id "ENSE00002966949.1" ; exon_number 1 ; gene_id "AC005050.1--SLC26A3^AC005050.1^ENSG00000267052.3" ; gene_name "AC005050.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182225.4" ; havana_transcript "OTTHUMT00000460143.2" ; level 2 ; orig_coord_info "chr7,106598754,106598908,-" ; tag TAGENE ; transcript_id "AC005050.1--SLC26A3^ENST00000591803.2" ; transcript_name "AC005050.1-202" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC092142.1--ELAPOR2 HAVANA gene 3462 6030 . + . FI_gene_label "AC092142.1^ENSG00000261235.1" ; ID "AC092142.1--ELAPOR2^AC092142.1^ENSG00000261235.1" ; exon_id "ENSE00002589133.1" ; exon_number 1 ; gene_id "AC092142.1--ELAPOR2^AC092142.1^ENSG00000261235.1" ; gene_name "AC092142.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000176574.1" ; havana_transcript "OTTHUMT00000432564.1" ; level 2 ; orig_coord_info "chr16,82063093,82063222,-" ; transcript_id "AC092142.1--ELAPOR2^ENST00000561826.1" ; transcript_name "AC092142.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC092142.1--ELAPOR2 HAVANA RNA 3462 6030 . + . FI_gene_label "AC092142.1^ENSG00000261235.1" ; ID "AC092142.1--ELAPOR2^ENST00000561826.1" ; Parent "AC092142.1--ELAPOR2^AC092142.1^ENSG00000261235.1" ; exon_id "ENSE00002589133.1" ; exon_number 1 ; gene_id "AC092142.1--ELAPOR2^AC092142.1^ENSG00000261235.1" ; gene_name "AC092142.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000176574.1" ; havana_transcript "OTTHUMT00000432564.1" ; level 2 ; orig_coord_info "chr16,82063093,82063222,-" ; transcript_id "AC092142.1--ELAPOR2^ENST00000561826.1" ; transcript_name "AC092142.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL033504.1--SASH1 HAVANA gene 1001 8267 . + . FI_gene_label "AL033504.1^ENSG00000227681.5" ; ID "AL033504.1--SASH1^AL033504.1^ENSG00000227681.5" ; exon_id "ENSE00001779070.1" ; exon_number 1 ; gene_id "AL033504.1--SASH1^AL033504.1^ENSG00000227681.5" ; gene_name "AL033504.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015769.1" ; havana_transcript "OTTHUMT00000042615.1" ; level 2 ; orig_coord_info "chr6,147660703,147660819,+" ; tag basic ; transcript_id "AL033504.1--SASH1^ENST00000427015.1" ; transcript_name "AL033504.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AL033504.1--SASH1 HAVANA RNA 1001 8267 . + . FI_gene_label "AL033504.1^ENSG00000227681.5" ; ID "AL033504.1--SASH1^ENST00000427015.1" ; Parent "AL033504.1--SASH1^AL033504.1^ENSG00000227681.5" ; exon_id "ENSE00001779070.1" ; exon_number 1 ; gene_id "AL033504.1--SASH1^AL033504.1^ENSG00000227681.5" ; gene_name "AL033504.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015769.1" ; havana_transcript "OTTHUMT00000042615.1" ; level 2 ; orig_coord_info "chr6,147660703,147660819,+" ; tag basic ; transcript_id "AL033504.1--SASH1^ENST00000427015.1" ; transcript_name "AL033504.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CHST11--OR7E109P HAVANA gene 14493 15347 . + . FI_gene_label "OR7E109P^ENSG00000236316.2" ; ID "CHST11--OR7E109P^OR7E109P^ENSG00000236316.2" ; exon_id "ENSE00001735644.1" ; exon_number 1 ; gene_id "CHST11--OR7E109P^OR7E109P^ENSG00000236316.2" ; gene_name OR7E109P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000020198.1" ; havana_transcript "OTTHUMT00000053016.1" ; hgnc_id "HGNC:15118" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,90742526,90743380,-" ; tag basic ; transcript_id "CHST11--OR7E109P^ENST00000445529.1" ; transcript_name "OR7E109P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
CHST11--OR7E109P HAVANA RNA 14493 15347 . + . FI_gene_label "OR7E109P^ENSG00000236316.2" ; ID "CHST11--OR7E109P^ENST00000445529.1" ; Parent "CHST11--OR7E109P^OR7E109P^ENSG00000236316.2" ; exon_id "ENSE00001735644.1" ; exon_number 1 ; gene_id "CHST11--OR7E109P^OR7E109P^ENSG00000236316.2" ; gene_name OR7E109P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000020198.1" ; havana_transcript "OTTHUMT00000053016.1" ; hgnc_id "HGNC:15118" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,90742526,90743380,-" ; tag basic ; transcript_id "CHST11--OR7E109P^ENST00000445529.1" ; transcript_name "OR7E109P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
COBL--LINC01866 HAVANA gene 35471 37671 . + . FI_gene_label "LINC01866^ENSG00000237670.1" ; ID "COBL--LINC01866^LINC01866^ENSG00000237670.1" ; exon_id "ENSE00001776128.1" ; exon_number 1 ; gene_id "COBL--LINC01866^LINC01866^ENSG00000237670.1" ; gene_name LINC01866 ; gene_type lncRNA ; havana_gene "OTTHUMG00000151745.1" ; havana_transcript "OTTHUMT00000323741.1" ; hgnc_id "HGNC:52685" ; level 2 ; orig_coord_info "chr2,16970034,16970077,+" ; tag basic ; transcript_id "COBL--LINC01866^ENST00000421181.1" ; transcript_name "LINC01866-201" ; transcript_support_level 3 ; transcript_type lncRNA
COBL--LINC01866 HAVANA RNA 35471 37671 . + . FI_gene_label "LINC01866^ENSG00000237670.1" ; ID "COBL--LINC01866^ENST00000421181.1" ; Parent "COBL--LINC01866^LINC01866^ENSG00000237670.1" ; exon_id "ENSE00001776128.1" ; exon_number 1 ; gene_id "COBL--LINC01866^LINC01866^ENSG00000237670.1" ; gene_name LINC01866 ; gene_type lncRNA ; havana_gene "OTTHUMG00000151745.1" ; havana_transcript "OTTHUMT00000323741.1" ; hgnc_id "HGNC:52685" ; level 2 ; orig_coord_info "chr2,16970034,16970077,+" ; tag basic ; transcript_id "COBL--LINC01866^ENST00000421181.1" ; transcript_name "LINC01866-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
COBL--RN7SKP168 ENSEMBL gene 35471 35770 . + . FI_gene_label "RN7SKP168^ENSG00000222842.1" ; ID "COBL--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; exon_id "ENSE00001590728.1" ; exon_number 1 ; gene_id "COBL--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; gene_name RN7SKP168 ; gene_type misc_RNA ; hgnc_id "HGNC:45892" ; level 3 ; orig_coord_info "chr2,17122841,17123140,-" ; tag basic ; transcript_id "COBL--RN7SKP168^ENST00000410910.1" ; transcript_name "RN7SKP168-201" ; transcript_support_level NA ; transcript_type misc_RNA
COBL--RN7SKP168 ENSEMBL RNA 35471 35770 . + . FI_gene_label "RN7SKP168^ENSG00000222842.1" ; ID "COBL--RN7SKP168^ENST00000410910.1" ; Parent "COBL--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; exon_id "ENSE00001590728.1" ; exon_number 1 ; gene_id "COBL--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; gene_name RN7SKP168 ; gene_type misc_RNA ; hgnc_id "HGNC:45892" ; level 3 ; orig_coord_info "chr2,17122841,17123140,-" ; tag basic ; transcript_id "COBL--RN7SKP168^ENST00000410910.1" ; transcript_name "RN7SKP168-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
DGCR2--WARS2-AS1 HAVANA gene 19628 34347 . + . FI_gene_label "WARS2-AS1^ENSG00000231365.6" ; ID "DGCR2--WARS2-AS1^WARS2-AS1^ENSG00000231365.6" ; exon_id "ENSE00001758700.1" ; exon_number 1 ; gene_id "DGCR2--WARS2-AS1^WARS2-AS1^ENSG00000231365.6" ; gene_name "WARS2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012342.2" ; havana_transcript "OTTHUMT00000034378.1" ; hgnc_id "HGNC:40612" ; level 2 ; orig_coord_info "chr1,119140730,119140793,+" ; transcript_id "DGCR2--WARS2-AS1^ENST00000413531.5" ; transcript_name "WARS2-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
DGCR2--WARS2-AS1 HAVANA RNA 19628 34347 . + . FI_gene_label "WARS2-AS1^ENSG00000231365.6" ; ID "DGCR2--WARS2-AS1^ENST00000413531.5" ; Parent "DGCR2--WARS2-AS1^WARS2-AS1^ENSG00000231365.6" ; exon_id "ENSE00001758700.1" ; exon_number 1 ; gene_id "DGCR2--WARS2-AS1^WARS2-AS1^ENSG00000231365.6" ; gene_name "WARS2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012342.2" ; havana_transcript "OTTHUMT00000034378.1" ; hgnc_id "HGNC:40612" ; level 2 ; orig_coord_info "chr1,119140730,119140793,+" ; transcript_id "DGCR2--WARS2-AS1^ENST00000413531.5" ; transcript_name "WARS2-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
FAF1--MIR4421 ENSEMBL gene 31499 31567 . + . FI_gene_label "MIR4421^ENSG00000265538.1" ; ID "FAF1--MIR4421^MIR4421^ENSG00000265538.1" ; exon_id "ENSE00002715236.1" ; exon_number 1 ; gene_id "FAF1--MIR4421^MIR4421^ENSG00000265538.1" ; gene_name MIR4421 ; gene_type miRNA ; hgnc_id "HGNC:41879" ; level 3 ; orig_coord_info "chr1,51059837,51059905,+" ; tag basic ; transcript_id "FAF1--MIR4421^ENST00000578133.1" ; transcript_name "MIR4421-201" ; transcript_support_level NA ; transcript_type miRNA
FAF1--MIR4421 ENSEMBL RNA 31499 31567 . + . FI_gene_label "MIR4421^ENSG00000265538.1" ; ID "FAF1--MIR4421^ENST00000578133.1" ; Parent "FAF1--MIR4421^MIR4421^ENSG00000265538.1" ; exon_id "ENSE00002715236.1" ; exon_number 1 ; gene_id "FAF1--MIR4421^MIR4421^ENSG00000265538.1" ; gene_name MIR4421 ; gene_type miRNA ; hgnc_id "HGNC:41879" ; level 3 ; orig_coord_info "chr1,51059837,51059905,+" ; tag basic ; transcript_id "FAF1--MIR4421^ENST00000578133.1" ; transcript_name "MIR4421-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
GLIS3--FGF7P4 HAVANA gene 39923 41217 . + . FI_gene_label "FGF7P4^ENSG00000216829.6" ; ID "GLIS3--FGF7P4^FGF7P4^ENSG00000216829.6" ; exon_id "ENSE00002082871.2" ; exon_number 1 ; gene_id "GLIS3--FGF7P4^FGF7P4^ENSG00000216829.6" ; gene_name FGF7P4 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013561.2" ; havana_transcript "OTTHUMT00000037737.2" ; hgnc_id "HGNC:33587" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,42668783,42668887,-" ; tag basic ; transcript_id "GLIS3--FGF7P4^ENST00000509595.2" ; transcript_name "FGF7P4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GLIS3--FGF7P4 HAVANA RNA 39923 41217 . + . FI_gene_label "FGF7P4^ENSG00000216829.6" ; ID "GLIS3--FGF7P4^ENST00000509595.2" ; Parent "GLIS3--FGF7P4^FGF7P4^ENSG00000216829.6" ; exon_id "ENSE00002082871.2" ; exon_number 1 ; gene_id "GLIS3--FGF7P4^FGF7P4^ENSG00000216829.6" ; gene_name FGF7P4 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013561.2" ; havana_transcript "OTTHUMT00000037737.2" ; hgnc_id "HGNC:33587" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,42668783,42668887,-" ; tag basic ; transcript_id "GLIS3--FGF7P4^ENST00000509595.2" ; transcript_name "FGF7P4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GLIS3--FGF7P6 HAVANA gene 39923 43899 . + . FI_gene_label "FGF7P6^ENSG00000227449.8" ; ID "GLIS3--FGF7P6^FGF7P6^ENSG00000227449.8" ; exon_id "ENSE00002272994.1" ; exon_number 1 ; gene_id "GLIS3--FGF7P6^FGF7P6^ENSG00000227449.8" ; gene_name FGF7P6 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000013302.3" ; havana_transcript "OTTHUMT00000360287.1" ; hgnc_id "HGNC:27852" ; level 2 ; orig_coord_info "chr9,62376161,62376813,+" ; tag basic ; transcript_id "GLIS3--FGF7P6^ENST00000377614.7" ; transcript_name "FGF7P6-201" ; transcript_support_level 1 ; transcript_type processed_transcript
GLIS3--FGF7P6 HAVANA RNA 39923 43899 . + . FI_gene_label "FGF7P6^ENSG00000227449.8" ; ID "GLIS3--FGF7P6^ENST00000377614.7" ; Parent "GLIS3--FGF7P6^FGF7P6^ENSG00000227449.8" ; exon_id "ENSE00002272994.1" ; exon_number 1 ; gene_id "GLIS3--FGF7P6^FGF7P6^ENSG00000227449.8" ; gene_name FGF7P6 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000013302.3" ; havana_transcript "OTTHUMT00000360287.1" ; hgnc_id "HGNC:27852" ; level 2 ; orig_coord_info "chr9,62376161,62376813,+" ; tag basic ; transcript_id "GLIS3--FGF7P6^ENST00000377614.7" ; transcript_name "FGF7P6-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
MFSD14B--LINC01591 HAVANA gene 18211 23956 . + . FI_gene_label "LINC01591^ENSG00000254083.6" ; ID "MFSD14B--LINC01591^LINC01591^ENSG00000254083.6" ; exon_id "ENSE00002091317.1" ; exon_number 1 ; gene_id "MFSD14B--LINC01591^LINC01591^ENSG00000254083.6" ; gene_name LINC01591 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164328.3" ; havana_transcript "OTTHUMT00000378293.1" ; hgnc_id "HGNC:27819" ; level 2 ; orig_coord_info "chr8,135234236,135234514,+" ; transcript_id "MFSD14B--LINC01591^ENST00000520101.5" ; transcript_name "LINC01591-201" ; transcript_support_level 1 ; transcript_type lncRNA
MFSD14B--LINC01591 HAVANA RNA 18211 23956 . + . FI_gene_label "LINC01591^ENSG00000254083.6" ; ID "MFSD14B--LINC01591^ENST00000520101.5" ; Parent "MFSD14B--LINC01591^LINC01591^ENSG00000254083.6" ; exon_id "ENSE00002091317.1" ; exon_number 1 ; gene_id "MFSD14B--LINC01591^LINC01591^ENSG00000254083.6" ; gene_name LINC01591 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164328.3" ; havana_transcript "OTTHUMT00000378293.1" ; hgnc_id "HGNC:27819" ; level 2 ; orig_coord_info "chr8,135234236,135234514,+" ; transcript_id "MFSD14B--LINC01591^ENST00000520101.5" ; transcript_name "LINC01591-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
NTM-AS1--OPCML HAVANA gene 1001 6274 . + . FI_gene_label "NTM-AS1^ENSG00000224795.3" ; ID "NTM-AS1--OPCML^NTM-AS1^ENSG00000224795.3" ; exon_id "ENSE00001749516.1" ; exon_number 1 ; gene_id "NTM-AS1--OPCML^NTM-AS1^ENSG00000224795.3" ; gene_name "NTM-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000066439.3" ; havana_transcript "OTTHUMT00000142052.2" ; hgnc_id "HGNC:32293" ; level 2 ; orig_coord_info "chr11,131663166,131663583,-" ; tag basic ; transcript_id "NTM-AS1--OPCML^ENST00000416725.2" ; transcript_name "NTM-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
NTM-AS1--OPCML HAVANA RNA 1001 6274 . + . FI_gene_label "NTM-AS1^ENSG00000224795.3" ; ID "NTM-AS1--OPCML^ENST00000416725.2" ; Parent "NTM-AS1--OPCML^NTM-AS1^ENSG00000224795.3" ; exon_id "ENSE00001749516.1" ; exon_number 1 ; gene_id "NTM-AS1--OPCML^NTM-AS1^ENSG00000224795.3" ; gene_name "NTM-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000066439.3" ; havana_transcript "OTTHUMT00000142052.2" ; hgnc_id "HGNC:32293" ; level 2 ; orig_coord_info "chr11,131663166,131663583,-" ; tag basic ; transcript_id "NTM-AS1--OPCML^ENST00000416725.2" ; transcript_name "NTM-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PARD3--AL392046.1 HAVANA gene 37581 40751 . + . FI_gene_label "AL392046.1^ENSG00000230534.6" ; ID "PARD3--AL392046.1^AL392046.1^ENSG00000230534.6" ; exon_id "ENSE00001726455.1" ; exon_number 1 ; gene_id "PARD3--AL392046.1^AL392046.1^ENSG00000230534.6" ; gene_name "AL392046.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017952.1" ; havana_transcript "OTTHUMT00000047549.1" ; level 2 ; orig_coord_info "chr10,35126568,35126660,-" ; tag basic ; transcript_id "PARD3--AL392046.1^ENST00000450106.1" ; transcript_name "AL392046.1-203" ; transcript_support_level 2 ; transcript_type lncRNA
PARD3--AL392046.1 HAVANA RNA 37581 40751 . + . FI_gene_label "AL392046.1^ENSG00000230534.6" ; ID "PARD3--AL392046.1^ENST00000450106.1" ; Parent "PARD3--AL392046.1^AL392046.1^ENSG00000230534.6" ; exon_id "ENSE00001726455.1" ; exon_number 1 ; gene_id "PARD3--AL392046.1^AL392046.1^ENSG00000230534.6" ; gene_name "AL392046.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017952.1" ; havana_transcript "OTTHUMT00000047549.1" ; level 2 ; orig_coord_info "chr10,35126568,35126660,-" ; tag basic ; transcript_id "PARD3--AL392046.1^ENST00000450106.1" ; transcript_name "AL392046.1-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SDHAF3--AC025614.2 HAVANA gene 8196 12306 . + . FI_gene_label "AC025614.2^ENSG00000287774.1" ; ID "SDHAF3--AC025614.2^AC025614.2^ENSG00000287774.1" ; exon_id "ENSE00003880635.1" ; exon_number 1 ; gene_id "SDHAF3--AC025614.2^AC025614.2^ENSG00000287774.1" ; gene_name "AC025614.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195433.1" ; havana_transcript "OTTHUMT00000526879.1" ; level 2 ; orig_coord_info "chr3,30292548,30292675,+" ; tag basic TAGENE ; transcript_id "SDHAF3--AC025614.2^ENST00000659869.1" ; transcript_name "AC025614.2-201" ; transcript_type lncRNA
SDHAF3--AC025614.2 HAVANA RNA 8196 12306 . + . FI_gene_label "AC025614.2^ENSG00000287774.1" ; ID "SDHAF3--AC025614.2^ENST00000659869.1" ; Parent "SDHAF3--AC025614.2^AC025614.2^ENSG00000287774.1" ; exon_id "ENSE00003880635.1" ; exon_number 1 ; gene_id "SDHAF3--AC025614.2^AC025614.2^ENSG00000287774.1" ; gene_name "AC025614.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195433.1" ; havana_transcript "OTTHUMT00000526879.1" ; level 2 ; orig_coord_info "chr3,30292548,30292675,+" ; tag basic TAGENE ; transcript_id "SDHAF3--AC025614.2^ENST00000659869.1" ; transcript_name "AC025614.2-201" ; transcript_type lncRNA
L1 and L2 created:
SDHAF3--LINC01985 HAVANA gene 8223 10806 . + . FI_gene_label "LINC01985^ENSG00000227260.2" ; ID "SDHAF3--LINC01985^LINC01985^ENSG00000227260.2" ; exon_id "ENSE00003876594.1" ; exon_number 1 ; gene_id "SDHAF3--LINC01985^LINC01985^ENSG00000227260.2" ; gene_name LINC01985 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155731.3" ; havana_transcript "OTTHUMT00000522376.1" ; hgnc_id "HGNC:52816" ; level 1 ; orig_coord_info "chr3,30518860,30518957,+" ; tag TAGENE exp_conf ; transcript_id "SDHAF3--LINC01985^ENST00000450746.2" ; transcript_name "LINC01985-201" ; transcript_support_level 3 ; transcript_type lncRNA
SDHAF3--LINC01985 HAVANA RNA 8223 10806 . + . FI_gene_label "LINC01985^ENSG00000227260.2" ; ID "SDHAF3--LINC01985^ENST00000450746.2" ; Parent "SDHAF3--LINC01985^LINC01985^ENSG00000227260.2" ; exon_id "ENSE00003876594.1" ; exon_number 1 ; gene_id "SDHAF3--LINC01985^LINC01985^ENSG00000227260.2" ; gene_name LINC01985 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155731.3" ; havana_transcript "OTTHUMT00000522376.1" ; hgnc_id "HGNC:52816" ; level 1 ; orig_coord_info "chr3,30518860,30518957,+" ; tag TAGENE exp_conf ; transcript_id "SDHAF3--LINC01985^ENST00000450746.2" ; transcript_name "LINC01985-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ST7--AC006001.3 HAVANA gene 42229 45911 . + . FI_gene_label "AC006001.3^ENSG00000229180.7" ; ID "ST7--AC006001.3^AC006001.3^ENSG00000229180.7" ; exon_id "ENSE00001782420.1" ; exon_number 1 ; gene_id "ST7--AC006001.3^AC006001.3^ENSG00000229180.7" ; gene_name "AC006001.3" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156758.3" ; havana_transcript "OTTHUMT00000345613.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,66576758,66576923,-" ; tag basic ; transcript_id "ST7--AC006001.3^ENST00000428370.1" ; transcript_name "AC006001.3-206" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
ST7--AC006001.3 HAVANA RNA 42229 45911 . + . FI_gene_label "AC006001.3^ENSG00000229180.7" ; ID "ST7--AC006001.3^ENST00000428370.1" ; Parent "ST7--AC006001.3^AC006001.3^ENSG00000229180.7" ; exon_id "ENSE00001782420.1" ; exon_number 1 ; gene_id "ST7--AC006001.3^AC006001.3^ENSG00000229180.7" ; gene_name "AC006001.3" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156758.3" ; havana_transcript "OTTHUMT00000345613.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,66576758,66576923,-" ; tag basic ; transcript_id "ST7--AC006001.3^ENST00000428370.1" ; transcript_name "AC006001.3-206" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TENT4B--AF254982.1 HAVANA gene 21798 22108 . + . FI_gene_label "AF254982.1^ENSG00000276556.1" ; ID "TENT4B--AF254982.1^AF254982.1^ENSG00000276556.1" ; exon_id "ENSE00003747824.1" ; exon_number 1 ; gene_id "TENT4B--AF254982.1^AF254982.1^ENSG00000276556.1" ; gene_name "AF254982.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188294.1" ; havana_transcript "OTTHUMT00000476836.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr21,10640028,10640338,-" ; tag basic ; transcript_id "TENT4B--AF254982.1^ENST00000611755.1" ; transcript_name "AF254982.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
TENT4B--AF254982.1 HAVANA RNA 21798 22108 . + . FI_gene_label "AF254982.1^ENSG00000276556.1" ; ID "TENT4B--AF254982.1^ENST00000611755.1" ; Parent "TENT4B--AF254982.1^AF254982.1^ENSG00000276556.1" ; exon_id "ENSE00003747824.1" ; exon_number 1 ; gene_id "TENT4B--AF254982.1^AF254982.1^ENSG00000276556.1" ; gene_name "AF254982.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188294.1" ; havana_transcript "OTTHUMT00000476836.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr21,10640028,10640338,-" ; tag basic ; transcript_id "TENT4B--AF254982.1^ENST00000611755.1" ; transcript_name "AF254982.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
TENT4B--AP001464.1 HAVANA gene 21798 23120 . + . FI_gene_label "AP001464.1^ENSG00000229306.1" ; ID "TENT4B--AP001464.1^AP001464.1^ENSG00000229306.1" ; exon_id "ENSE00001750426.1" ; exon_number 1 ; gene_id "TENT4B--AP001464.1^AP001464.1^ENSG00000229306.1" ; gene_name "AP001464.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074167.1" ; havana_transcript "OTTHUMT00000157562.1" ; level 2 ; orig_coord_info "chr21,13016621,13016692,-" ; tag basic ; transcript_id "TENT4B--AP001464.1^ENST00000457565.1" ; transcript_name "AP001464.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TENT4B--AP001464.1 HAVANA RNA 21798 23120 . + . FI_gene_label "AP001464.1^ENSG00000229306.1" ; ID "TENT4B--AP001464.1^ENST00000457565.1" ; Parent "TENT4B--AP001464.1^AP001464.1^ENSG00000229306.1" ; exon_id "ENSE00001750426.1" ; exon_number 1 ; gene_id "TENT4B--AP001464.1^AP001464.1^ENSG00000229306.1" ; gene_name "AP001464.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074167.1" ; havana_transcript "OTTHUMT00000157562.1" ; level 2 ; orig_coord_info "chr21,13016621,13016692,-" ; tag basic ; transcript_id "TENT4B--AP001464.1^ENST00000457565.1" ; transcript_name "AP001464.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
857 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1613 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 89 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed