-ctat genome lib [/tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.s3HI74ZYeN/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary -sample contains 81322568 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir -J /tmp/nxf.s3HI74ZYeN/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2.Chimeric.out.junction -O /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.s3HI74ZYeN/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2.Chimeric.out.junction -building interval tree based on /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=52173.91/min [30000], rate=54545.45/min [40000], rate=55813.95/min [50000], rate=56603.77/min [60000], rate=59016.39/min [70000], rate=60000.00/min [80000], rate=63157.89/min [90000], rate=65060.24/min [100000], rate=65934.07/min [110000], rate=68041.24/min [120000], rate=69902.91/min [130000], rate=70270.27/min [140000], rate=72413.79/min [150000], rate=73770.49/min [160000], rate=75590.55/min [170000], rate=77862.60/min [180000], rate=76056.34/min [190000], rate=73076.92/min [200000], rate=68965.52/min [210000], rate=66315.79/min [220000], rate=64390.24/min [230000], rate=63302.75/min [240000], rate=62068.97/min [250000], rate=60975.61/min [260000], rate=60465.12/min [270000], rate=59558.82/min [280000], rate=59154.93/min [290000], rate=58585.86/min [300000], rate=58823.53/min [310000], rate=58860.76/min [320000], rate=58895.71/min [330000], rate=59104.48/min [340000], rate=58452.72/min [350000], rate=58333.33/min [360000], rate=58378.38/min [370000], rate=58267.72/min [380000], rate=58611.83/min [390000], rate=58646.62/min [400000], rate=58679.71/min [410000], rate=58571.43/min [420000], rate=58604.65/min [430000], rate=58371.04/min [440000], rate=58278.15/min [450000], rate=58315.33/min [460000], rate=58474.58/min [470000], rate=58627.86/min [480000], rate=58775.51/min [490000], rate=59154.93/min [500000], rate=60000.00/min [510000], rate=60956.18/min [520000], rate=61417.32/min [530000], rate=61747.57/min [540000], rate=62068.97/min [550000], rate=62381.85/min [560000], rate=62921.35/min [570000], rate=63450.83/min [580000], rate=63619.74/min [590000], rate=63669.06/min [600000], rate=63716.81/min [610000], rate=63874.35/min [620000], rate=64027.54/min [630000], rate=64505.12/min [640000], rate=64755.48/min [650000], rate=65000.00/min [660000], rate=65238.88/min [670000], rate=65579.12/min [680000], rate=66019.42/min [690000], rate=66452.65/min [700000], rate=66772.66/min [710000], rate=67086.61/min [720000], rate=67817.90/min [730000], rate=68652.04/min [740000], rate=69158.88/min [750000], rate=69659.44/min [760000], rate=69938.65/min [770000], rate=70426.83/min [780000], rate=70694.86/min [790000], rate=70958.08/min [800000], rate=71322.44/min [810000], rate=72000.00/min [820000], rate=72352.94/min [830000], rate=72594.75/min [840000], rate=73149.49/min [850000], rate=73699.42/min [860000], rate=73819.74/min [870000], rate=73833.10/min [880000], rate=74261.60/min [890000], rate=74269.82/min [900000], rate=74380.17/min [910000], rate=74590.16/min [920000], rate=74493.93/min [930000], rate=74499.33/min [940000], rate=74406.33/min [950000], rate=74803.15/min [960000], rate=75491.48/min [970000], rate=75979.11/min [980000], rate=76363.64/min [990000], rate=76447.88/min [1000000], rate=76923.08/min [1010000], rate=76903.55/min [1020000], rate=77078.09/min [1030000], rate=77540.78/min [1040000], rate=78000.00/min [1050000], rate=78358.21/min [1060000], rate=78518.52/min [1070000], rate=78966.79/min [1080000], rate=79606.88/min [1090000], rate=80245.40/min [1100000], rate=80684.60/min [1110000], rate=80825.24/min [1120000], rate=81061.52/min [1130000], rate=81294.96/min [1140000], rate=81428.57/min [1150000], rate=81656.80/min [1160000], rate=81786.13/min [1170000], rate=81533.10/min [1180000], rate=81849.71/min [1190000], rate=81974.74/min [1200000], rate=82379.86/min [1210000], rate=82593.86/min [1220000], rate=82805.43/min [1230000], rate=83108.11/min [1240000], rate=83501.68/min [1250000], rate=83705.36/min [1260000], rate=83720.93/min [1270000], rate=83828.38/min [1280000], rate=83934.43/min [1290000], rate=84221.98/min [1300000], rate=84507.04/min [1310000], rate=84698.28/min [1320000], rate=84705.88/min [1330000], rate=84713.38/min [1340000], rate=84542.59/min [1350000], rate=84462.98/min [1360000], rate=84559.59/min [1370000], rate=84480.99/min [1380000], rate=84576.10/min [1390000], rate=84756.10/min [1400000], rate=84848.48/min [1410000], rate=85025.13/min [1420000], rate=85200.00/min [1430000], rate=85203.57/min [1440000], rate=84622.92/min [1450000], rate=84139.26/min [1460000], rate=83508.10/min [1470000], rate=83129.12/min [1480000], rate=82681.56/min [1490000], rate=82244.71/min [1500000], rate=81669.69/min [1510000], rate=81182.80/min [1520000], rate=80851.06/min [1530000], rate=80597.01/min [1540000], rate=80487.80/min [1550000], rate=80310.88/min [1560000], rate=80205.66/min [1570000], rate=80033.98/min [1580000], rate=79932.55/min [1590000], rate=79966.47/min [1600000], rate=79933.39/min [1610000], rate=79768.79/min [1620000], rate=79737.49/min [1630000], rate=79706.60/min -building interval tree based on /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=120000.00/min [20000], rate=120000.00/min [30000], rate=120000.00/min [40000], rate=120000.00/min [50000], rate=115384.62/min [60000], rate=97297.30/min [70000], rate=91304.35/min [80000], rate=82758.62/min [90000], rate=79411.76/min [100000], rate=77922.08/min [110000], rate=78571.43/min [120000], rate=76595.74/min [130000], rate=76470.59/min [140000], rate=76363.64/min [150000], rate=76271.19/min [160000], rate=76800.00/min [170000], rate=77862.60/min [180000], rate=78832.12/min [190000], rate=78620.69/min [200000], rate=78431.37/min [210000], rate=77777.78/min [220000], rate=75862.07/min [230000], rate=73796.79/min [240000], rate=72000.00/min [250000], rate=70422.54/min [260000], rate=69642.86/min [270000], rate=68644.07/min [280000], rate=67200.00/min [290000], rate=67441.86/min [300000], rate=67415.73/min [310000], rate=67391.30/min [320000], rate=67605.63/min [330000], rate=67808.22/min [340000], rate=68227.42/min [350000], rate=68852.46/min [360000], rate=69677.42/min [370000], rate=69811.32/min [380000], rate=70153.85/min [390000], rate=70270.27/min [400000], rate=70796.46/min [410000], rate=71098.27/min [420000], rate=71388.10/min [430000], rate=72471.91/min [440000], rate=72328.77/min [450000], rate=71052.63/min [460000], rate=70050.76/min [470000], rate=69117.65/min [480000], rate=68899.52/min [490000], rate=68372.09/min [500000], rate=67720.09/min [510000], rate=66958.42/min [520000], rate=66524.52/min [530000], rate=66250.00/min [540000], rate=66393.44/min [550000], rate=66265.06/min [560000], rate=65753.42/min [570000], rate=65895.95/min [580000], rate=65784.50/min [590000], rate=65677.18/min [600000], rate=65693.43/min [610000], rate=65827.34/min [620000], rate=66666.67/min [630000], rate=67259.79/min [640000], rate=67605.63/min [650000], rate=67708.33/min [660000], rate=67924.53/min [670000], rate=68135.59/min [680000], rate=68456.38/min [690000], rate=68429.75/min [700000], rate=67851.37/min [710000], rate=67298.58/min [720000], rate=66461.54/min [730000], rate=65864.66/min [740000], rate=65486.73/min [750000], rate=65406.98/min [760000], rate=65236.05/min [770000], rate=65162.20/min [780000], rate=65181.06/min [790000], rate=65199.45/min [800000], rate=65306.12/min [810000], rate=65322.58/min [820000], rate=65338.65/min [830000], rate=65268.68/min [840000], rate=65200.52/min [850000], rate=65217.39/min [860000], rate=65233.88/min [870000], rate=65413.53/min [880000], rate=65753.42/min [890000], rate=65844.64/min [900000], rate=66014.67/min [910000], rate=66101.69/min [920000], rate=66266.51/min [930000], rate=66428.57/min [940000], rate=66745.56/min [950000], rate=66901.41/min [960000], rate=67289.72/min [970000], rate=67595.82/min [980000], rate=67898.38/min [990000], rate=67885.71/min [1000000], rate=67796.61/min [1010000], rate=67633.93/min [1020000], rate=67624.31/min [1030000], rate=67467.25/min [1040000], rate=67313.92/min [1050000], rate=67235.86/min [1060000], rate=67301.59/min [1070000], rate=67436.97/min [1080000], rate=67500.00/min [1090000], rate=67561.98/min [1100000], rate=67761.81/min [1110000], rate=67889.91/min [1120000], rate=68085.11/min [1130000], rate=68415.74/min [1140000], rate=68674.70/min [1150000], rate=68931.07/min [1160000], rate=69184.89/min [1170000], rate=69367.59/min [1180000], rate=69275.93/min [1190000], rate=69052.22/min [1200000], rate=68965.52/min [1210000], rate=68945.87/min [1220000], rate=68991.52/min [1230000], rate=69036.48/min [1240000], rate=68952.73/min [1250000], rate=68870.52/min [1260000], rate=68915.22/min [1270000], rate=68772.56/min [1280000], rate=68817.20/min [1290000], rate=68861.21/min [1300000], rate=68965.52/min [1310000], rate=69007.90/min [1320000], rate=69230.77/min [1330000], rate=69451.70/min [1340000], rate=69913.04/min [1350000], rate=70312.50/min [1360000], rate=70649.35/min [1370000], rate=70801.03/min [1380000], rate=70829.77/min [1390000], rate=70918.37/min [1400000], rate=71126.16/min [1410000], rate=71092.44/min [1420000], rate=70940.88/min [1430000], rate=70967.74/min [1440000], rate=70994.25/min [1450000], rate=71253.07/min [1460000], rate=71335.50/min [1470000], rate=71243.94/min [1480000], rate=71268.06/min [1490000], rate=71348.76/min [1500000], rate=71542.13/min [1510000], rate=71677.22/min [1520000], rate=71754.52/min [1530000], rate=71887.24/min [1540000], rate=72074.88/min [1550000], rate=72204.97/min [1560000], rate=72389.79/min [1570000], rate=72573.19/min [1580000], rate=72979.21/min [1590000], rate=73328.21/min [1600000], rate=73563.22/min [1610000], rate=73796.79/min [1620000], rate=73916.35/min -building interval tree based on /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.05 min). -mapping reads to genes [10000], rate=75000.00/min [20000], rate=70588.24/min [30000], rate=72000.00/min [40000], rate=72727.27/min [50000], rate=73170.73/min [60000], rate=73469.39/min [70000], rate=72413.79/min [80000], rate=73846.15/min [90000], rate=75000.00/min [100000], rate=76923.08/min [110000], rate=77647.06/min [120000], rate=80000.00/min [130000], rate=80412.37/min [140000], rate=81553.40/min [150000], rate=82568.81/min [160000], rate=84210.53/min [170000], rate=84297.52/min [180000], rate=84375.00/min [190000], rate=84444.44/min [200000], rate=84507.04/min [210000], rate=84000.00/min [220000], rate=85161.29/min [230000], rate=86250.00/min [240000], rate=87272.73/min [250000], rate=87719.30/min [260000], rate=86666.67/min [270000], rate=85714.29/min [280000], rate=84422.11/min [290000], rate=83653.85/min [300000], rate=82191.78/min [310000], rate=80869.57/min [320000], rate=80672.27/min [330000], rate=81147.54/min [340000], rate=80632.41/min [350000], rate=80769.23/min [360000], rate=81203.01/min [370000], rate=81617.65/min [380000], rate=82014.39/min [390000], rate=82978.72/min [400000], rate=84210.53/min [410000], rate=86013.99/min [420000], rate=86896.55/min [430000], rate=88054.61/min [440000], rate=89189.19/min [450000], rate=89701.00/min [460000], rate=91694.35/min [470000], rate=93687.71/min [480000], rate=94736.84/min [490000], rate=95454.55/min [500000], rate=95238.10/min [510000], rate=94153.85/min [520000], rate=93413.17/min [530000], rate=91907.51/min [540000], rate=90756.30/min [550000], rate=91160.22/min [560000], rate=90080.43/min [570000], rate=89528.80/min [580000], rate=89002.56/min [590000], rate=88944.72/min [600000], rate=88888.89/min [610000], rate=88834.95/min [620000], rate=88995.22/min [630000], rate=89150.94/min [640000], rate=89095.13/min [650000], rate=88235.29/min [660000], rate=86842.11/min [670000], rate=85897.44/min [680000], rate=85714.29/min [690000], rate=86070.69/min [700000], rate=85714.29/min [710000], rate=84523.81/min [720000], rate=83558.99/min [730000], rate=82954.55/min [740000], rate=82374.77/min [750000], rate=81818.18/min [760000], rate=81574.24/min [770000], rate=80910.68/min [780000], rate=80550.77/min [790000], rate=80338.98/min [800000], rate=80133.56/min [810000], rate=79802.96/min [820000], rate=79227.05/min [830000], rate=79173.29/min [840000], rate=78873.24/min [850000], rate=78461.54/min [860000], rate=77828.05/min [870000], rate=77678.57/min [880000], rate=77306.00/min [890000], rate=77056.28/min [900000], rate=76704.55/min [910000], rate=76577.84/min [920000], rate=76454.29/min [930000], rate=76125.51/min [940000], rate=76010.78/min [950000], rate=75797.87/min [960000], rate=75590.55/min [970000], rate=75584.42/min [980000], rate=75578.41/min [990000], rate=75476.49/min [1000000], rate=75566.75/min [1010000], rate=75561.10/min [1020000], rate=75742.57/min [1030000], rate=76014.76/min [1040000], rate=76283.62/min [1050000], rate=76549.21/min [1060000], rate=76167.66/min [1070000], rate=75618.37/min [1080000], rate=75000.00/min [1090000], rate=74487.47/min [1100000], rate=74240.72/min [1110000], rate=73917.87/min [1120000], rate=73603.50/min [1130000], rate=73456.12/min [1140000], rate=73233.40/min [1150000], rate=73248.41/min [1160000], rate=72879.58/min [1170000], rate=72670.81/min [1180000], rate=72615.38/min [1190000], rate=72487.31/min [1200000], rate=72289.16/min [1210000], rate=72167.00/min [1220000], rate=72189.35/min [1230000], rate=72070.31/min [1240000], rate=72023.23/min [1250000], rate=72046.11/min [1260000], rate=72068.64/min [1270000], rate=72022.68/min [1280000], rate=71842.84/min [1290000], rate=71799.63/min [1300000], rate=71757.13/min [1310000], rate=71715.33/min [1320000], rate=71804.17/min [1330000], rate=71956.72/min [1340000], rate=72172.35/min [1350000], rate=72256.91/min [1360000], rate=72404.61/min [1370000], rate=72614.84/min [1380000], rate=72759.23/min [1390000], rate=72902.10/min [1400000], rate=73043.48/min [1410000], rate=73120.14/min [1420000], rate=73575.13/min [1430000], rate=73965.52/min [1440000], rate=74418.60/min [1450000], rate=74550.13/min [1460000], rate=74553.19/min [1470000], rate=74682.47/min [1480000], rate=74747.47/min [1490000], rate=74874.37/min [1500000], rate=74937.55/min [1510000], rate=74752.48/min [1520000], rate=74570.73/min [1530000], rate=74392.22/min [1540000], rate=74097.83/min [1550000], rate=73634.20/min [1560000], rate=73469.39/min [1570000], rate=73193.47/min [1580000], rate=73148.15/min [1590000], rate=73103.45/min [1600000], rate=72837.63/min [1610000], rate=72686.23/min [1620000], rate=72591.49/min -building interval tree based on /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=150000.00/min [20000], rate=133333.33/min [30000], rate=150000.00/min [40000], rate=150000.00/min [50000], rate=150000.00/min [60000], rate=150000.00/min [70000], rate=135483.87/min [80000], rate=141176.47/min [90000], rate=142105.26/min [100000], rate=150000.00/min [110000], rate=157142.86/min [120000], rate=153191.49/min [130000], rate=156000.00/min [140000], rate=164705.88/min [150000], rate=176470.59/min [160000], rate=184615.38/min [170000], rate=185454.55/min [180000], rate=180000.00/min [190000], rate=175384.62/min [200000], rate=171428.57/min [210000], rate=172602.74/min [220000], rate=169230.77/min [230000], rate=166265.06/min [240000], rate=158241.76/min [250000], rate=159574.47/min [260000], rate=160824.74/min [270000], rate=163636.36/min [280000], rate=163106.80/min [290000], rate=162616.82/min [300000], rate=165137.61/min [310000], rate=170642.20/min [320000], rate=174545.45/min [330000], rate=176785.71/min [340000], rate=174358.97/min [350000], rate=172131.15/min [360000], rate=168750.00/min [370000], rate=168181.82/min [380000], rate=167647.06/min [390000], rate=167142.86/min [400000], rate=170212.77/min [410000], rate=172027.97/min [420000], rate=169127.52/min [430000], rate=163291.14/min [440000], rate=160975.61/min [450000], rate=158823.53/min [460000], rate=158620.69/min [470000], rate=160227.27/min [480000], rate=160000.00/min [490000], rate=158918.92/min [500000], rate=159574.47/min [510000], rate=159375.00/min [520000], rate=157575.76/min [530000], rate=155121.95/min [540000], rate=153554.50/min [550000], rate=154205.61/min [560000], rate=153424.66/min [570000], rate=154751.13/min [580000], rate=156053.81/min [590000], rate=155947.14/min [600000], rate=153846.15/min [610000], rate=151239.67/min [620000], rate=151219.51/min [630000], rate=151807.23/min [640000], rate=152988.05/min [650000], rate=152343.75/min [660000], rate=151724.14/min [670000], rate=152851.71/min [680000], rate=147826.09/min [690000], rate=128173.37/min [700000], rate=120689.66/min [710000], rate=114516.13/min [720000], rate=109644.67/min [730000], rate=105288.46/min [740000], rate=101601.83/min [750000], rate=98468.27/min [760000], rate=95000.00/min [770000], rate=92215.57/min [780000], rate=90173.41/min [790000], rate=87777.78/min [800000], rate=86021.51/min [810000], rate=84083.04/min [820000], rate=82689.08/min [830000], rate=81639.34/min [840000], rate=80511.18/min [850000], rate=79563.18/min [860000], rate=78899.08/min [870000], rate=78026.91/min [880000], rate=77533.04/min [890000], rate=77056.28/min [900000], rate=76595.74/min [910000], rate=76044.57/min [920000], rate=75306.96/min [930000], rate=74798.93/min [940000], rate=74210.53/min [950000], rate=74025.97/min [960000], rate=73846.15/min [970000], rate=73577.75/min [980000], rate=73408.24/min [990000], rate=73242.91/min [1000000], rate=73170.73/min [1010000], rate=73188.41/min [1020000], rate=73293.41/min [1030000], rate=73222.75/min [1040000], rate=73325.50/min [1050000], rate=73426.57/min [1060000], rate=73696.41/min [1070000], rate=73878.02/min [1080000], rate=74141.88/min [1090000], rate=74487.47/min [1100000], rate=74240.72/min [1110000], rate=74164.81/min [1120000], rate=74008.81/min [1130000], rate=73856.21/min [1140000], rate=73945.95/min [1150000], rate=73954.98/min [1160000], rate=73885.35/min [1170000], rate=73817.03/min [1180000], rate=73981.19/min [1190000], rate=74066.39/min [1200000], rate=74074.07/min [1210000], rate=74157.30/min [1220000], rate=74314.72/min [1230000], rate=74395.16/min [1240000], rate=74549.10/min [1250000], rate=74701.20/min [1260000], rate=75000.00/min [1270000], rate=75222.11/min [1280000], rate=75073.31/min [1290000], rate=74854.93/min [1300000], rate=74641.15/min [1310000], rate=74291.12/min [1320000], rate=74018.69/min [1330000], rate=73820.54/min [1340000], rate=73491.77/min [1350000], rate=73369.57/min [1360000], rate=73118.28/min [1370000], rate=73131.67/min [1380000], rate=72887.32/min [1390000], rate=72584.86/min [1400000], rate=72289.16/min [1410000], rate=72245.94/min [1420000], rate=72142.25/min [1430000], rate=72040.30/min [1440000], rate=71940.05/min [1450000], rate=71900.83/min [1460000], rate=71980.28/min [1470000], rate=72058.82/min [1480000], rate=72019.46/min [1490000], rate=72213.25/min [1500000], rate=72347.27/min [1510000], rate=72538.03/min [1520000], rate=72727.27/min [1530000], rate=72857.14/min [1540000], rate=72985.78/min [1550000], rate=72884.01/min [1560000], rate=72727.27/min [1570000], rate=72517.32/min [1580000], rate=72366.41/min [1590000], rate=72218.02/min [1600000], rate=72180.45/min [1610000], rate=72143.39/min [1620000], rate=72106.82/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir --filt_file /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 12000000.00 reads per min processed... 10000000.00 reads per min processed... 12000000.00 reads per min processed... 8400000.00 reads per min processed... 8000000.00 reads per min processed... 6750000.00 reads per min processed... 6666666.67 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5625000.00 reads per min processed... 5647058.82 reads per min processed... 5666666.67 reads per min processed... 5400000.00 reads per min processed... 5428571.43 reads per min processed... 5217391.30 reads per min processed... 5250000.00 reads per min processed... 5076923.08 reads per min processed... 4928571.43 reads per min processed... 4965517.24 reads per min processed... 4838709.68 reads per min processed... 4875000.00 reads per min processed... 4909090.91 reads per min processed... 4941176.47 reads per min processed... 4833333.33 reads per min processed... 4864864.86 reads per min processed... 4894736.84 reads per min processed... 4923076.92 reads per min processed... 4950000.00 reads per min processed... 4857142.86 reads per min processed... 4883720.93 reads per min processed... 4909090.91 reads per min processed... 5045454.55 reads per min processed... 5066666.67 reads per min processed... 5200000.00 reads per min processed... 5217391.30 reads per min processed... 5234042.55 reads per min processed... 5142857.14 reads per min processed... 5160000.00 reads per min processed... 5176470.59 reads per min processed... 5192307.69 reads per min processed... 5207547.17 reads per min processed... 5127272.73 reads per min processed... 5142857.14 reads per min processed... 5157894.74 reads per min processed... 5084745.76 reads per min processed... 5100000.00 reads per min processed... 5032258.06 reads per min processed... 5047619.05 reads per min processed... 5062500.00 reads per min processed... 5076923.08 reads per min processed... 5090909.09 reads per min processed... 5104477.61 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.s3HI74ZYeN/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -113244.124138 EM: Round [1] log likelihood: -113023.491463 EM: Round [2] log likelihood: -112935.451184 EM: Round [3] log likelihood: -112892.471482 EM: Round [4] log likelihood: -112869.735161 EM: Round [5] log likelihood: -112857.132953 EM: Round [6] log likelihood: -112849.860312 EM: Round [7] log likelihood: -112845.488208 EM: Round [8] log likelihood: -112842.749437 EM: Round [9] log likelihood: -112840.964653 EM: Round [10] log likelihood: -112839.758398 EM: Round [11] log likelihood: -112838.916077 EM: Round [12] log likelihood: -112838.310688 EM: Round [13] log likelihood: -112837.864442 EM: Round [14] log likelihood: -112837.528117 EM: Round [15] log likelihood: -112837.269623 EM: Round [16] log likelihood: -112837.067464 EM: Round [17] log likelihood: -112836.906890 EM: Round [18] log likelihood: -112836.777558 EM: Round [19] log likelihood: -112836.672077 EM: Round [20] log likelihood: -112836.585070 EM: Round [21] log likelihood: -112836.512563 EM: Round [22] log likelihood: -112836.451579 EM: Round [23] log likelihood: -112836.399854 EM: Round [24] log likelihood: -112836.355647 EM: Round [25] log likelihood: -112836.317604 EM: Round [26] log likelihood: -112836.284658 EM: Round [27] log likelihood: -112836.255962 EM: Round [28] log likelihood: -112836.230835 EM: Round [29] log likelihood: -112836.208728 EM: Round [30] log likelihood: -112836.189190 EM: Round [31] log likelihood: -112836.171852 EM: Round [32] log likelihood: -112836.156407 EM: Round [33] log likelihood: -112836.142601 EM: Round [34] log likelihood: -112836.130218 EM: Round [35] log likelihood: -112836.119078 EM: Round [36] log likelihood: -112836.109027 EM: Round [37] log likelihood: -112836.099935 EM: Round [38] log likelihood: -112836.091688 EM: Round [39] log likelihood: -112836.084190 EM: Round [40] log likelihood: -112836.077358 EM: Round [41] log likelihood: -112836.071119 EM: Round [42] log likelihood: -112836.065411 EM: Round [43] log likelihood: -112836.060176 EM: Round [44] log likelihood: -112836.055368 EM: Round [45] log likelihood: -112836.050944 EM: Round [46] log likelihood: -112836.046866 EM: Round [47] log likelihood: -112836.043101 EM: Round [48] log likelihood: -112836.039619 EM: Round [49] log likelihood: -112836.036394 EM: Round [50] log likelihood: -112836.033403 EM: Round [51] log likelihood: -112836.030625 EM: Round [52] log likelihood: -112836.028041 EM: Round [53] log likelihood: -112836.025635 EM: Round [54] log likelihood: -112836.023391 EM: Round [55] log likelihood: -112836.021296 EM: Round [56] log likelihood: -112836.019337 EM: Round [57] log likelihood: -112836.017504 EM: Round [58] log likelihood: -112836.015786 EM: Round [59] log likelihood: -112836.014174 EM: Round [60] log likelihood: -112836.012661 EM: Round [61] log likelihood: -112836.011238 EM: Round [62] log likelihood: -112836.009899 EM: Round [63] log likelihood: -112836.008638 EM: Round [64] log likelihood: -112836.007448 EM: Round [65] log likelihood: -112836.006326 EM: Round [66] log likelihood: -112836.005265 EM: Round [67] log likelihood: -112836.004262 EM: Round [68] log likelihood: -112836.003312 EM: Round [69] log likelihood: -112836.002413 EM: Round [70] log likelihood: -112836.001560 EM: Round [71] log likelihood: -112836.000751 EM: Round [72] log likelihood: -112835.999982 EM: Round [73] log likelihood: -112835.999252 EM: Round [74] log likelihood: -112835.998557 EM: Round [75] log likelihood: -112835.997895 EM: Round [76] log likelihood: -112835.997265 EM: Round [77] log likelihood: -112835.996664 EM: Round [78] log likelihood: -112835.996091 EM: Round [79] log likelihood: -112835.995544 EM: Round [80] log likelihood: -112835.995022 EM: Round [81] log likelihood: -112835.994522 EM: Round [82] log likelihood: -112835.994045 EM: Round [83] log likelihood: -112835.993588 EM: Round [84] log likelihood: -112835.993150 EM: Round [85] log likelihood: -112835.992730 EM: Round [86] log likelihood: -112835.992328 EM: Round [87] log likelihood: -112835.991943 EM: Round [88] log likelihood: -112835.991573 EM: Round [89] log likelihood: -112835.991217 EM: Round [90] log likelihood: -112835.990876 EM: Round [91] log likelihood: -112835.990548 EM: Round [92] log likelihood: -112835.990233 EM: Round [93] log likelihood: -112835.989929 EM: Round [94] log likelihood: -112835.989637 EM: Round [95] log likelihood: -112835.989356 EM: Round [96] log likelihood: -112835.989085 EM: Round [97] log likelihood: -112835.988825 EM: Round [98] log likelihood: -112835.988573 EM: Round [99] log likelihood: -112835.988331 EM: Round [100] log likelihood: -112835.988097 EM: Round [101] log likelihood: -112835.987871 EM: Round [102] log likelihood: -112835.987653 EM: Round [103] log likelihood: -112835.987443 EM: Round [104] log likelihood: -112835.987240 EM: Round [105] log likelihood: -112835.987044 EM: Round [106] log likelihood: -112835.986854 EM: Round [107] log likelihood: -112835.986670 EM: Round [108] log likelihood: -112835.986493 EM: Round [109] log likelihood: -112835.986322 EM: Round [110] log likelihood: -112835.986156 EM: Round [111] log likelihood: -112835.985995 EM: Round [112] log likelihood: -112835.985839 EM: Round [113] log likelihood: -112835.985689 EM: Round [114] log likelihood: -112835.985543 EM: Round [115] log likelihood: -112835.985401 EM: Round [116] log likelihood: -112835.985264 EM: Round [117] log likelihood: -112835.985132 EM: Round [118] log likelihood: -112835.985003 EM: Round [119] log likelihood: -112835.984878 EM: Round [120] log likelihood: -112835.984757 EM: Round [121] log likelihood: -112835.984640 EM: Round [122] log likelihood: -112835.984526 EM: Round [123] log likelihood: -112835.984415 EM: Round [124] log likelihood: -112835.984308 EM: Round [125] log likelihood: -112835.984203 EM: Round [126] log likelihood: -112835.984102 EM: Round [127] log likelihood: -112835.984004 EM: Stopping iterations at round 127 due to insufficient improvement in likelihood. EM: Starting log likelihood: -113141.240086 EM: Round [1] log likelihood: -112959.154590 EM: Round [2] log likelihood: -112890.907775 EM: Round [3] log likelihood: -112858.415537 EM: Round [4] log likelihood: -112841.399922 EM: Round [5] log likelihood: -112832.007118 EM: Round [6] log likelihood: -112826.599668 EM: Round [7] log likelihood: -112823.357972 EM: Round [8] log likelihood: -112821.335763 EM: Round [9] log likelihood: -112820.025673 EM: Round [10] log likelihood: -112819.146919 EM: Round [11] log likelihood: -112818.538795 EM: Round [12] log likelihood: -112818.106118 EM: Round [13] log likelihood: -112817.790605 EM: Round [14] log likelihood: -112817.555430 EM: Round [15] log likelihood: -112817.376651 EM: Round [16] log likelihood: -112817.238299 EM: Round [17] log likelihood: -112817.129479 EM: Round [18] log likelihood: -112817.042604 EM: Round [19] log likelihood: -112816.972297 EM: Round [20] log likelihood: -112816.914682 EM: Round [21] log likelihood: -112816.866926 EM: Round [22] log likelihood: -112816.826927 EM: Round [23] log likelihood: -112816.793103 EM: Round [24] log likelihood: -112816.764255 EM: Round [25] log likelihood: -112816.739457 EM: Round [26] log likelihood: -112816.717987 EM: Round [27] log likelihood: -112816.699279 EM: Round [28] log likelihood: -112816.682882 EM: Round [29] log likelihood: -112816.668434 EM: Round [30] log likelihood: -112816.655641 EM: Round [31] log likelihood: -112816.644263 EM: Round [32] log likelihood: -112816.634102 EM: Round [33] log likelihood: -112816.624994 EM: Round [34] log likelihood: -112816.616801 EM: Round [35] log likelihood: -112816.609408 EM: Round [36] log likelihood: -112816.602716 EM: Round [37] log likelihood: -112816.596641 EM: Round [38] log likelihood: -112816.591113 EM: Round [39] log likelihood: -112816.586069 EM: Round [40] log likelihood: -112816.581456 EM: Round [41] log likelihood: -112816.577228 EM: Round [42] log likelihood: -112816.573344 EM: Round [43] log likelihood: -112816.569770 EM: Round [44] log likelihood: -112816.566473 EM: Round [45] log likelihood: -112816.563427 EM: Round [46] log likelihood: -112816.560607 EM: Round [47] log likelihood: -112816.557992 EM: Round [48] log likelihood: -112816.555564 EM: Round [49] log likelihood: -112816.553304 EM: Round [50] log likelihood: -112816.551199 EM: Round [51] log likelihood: -112816.549234 EM: Round [52] log likelihood: -112816.547398 EM: Round [53] log likelihood: -112816.545679 EM: Round [54] log likelihood: -112816.544069 EM: Round [55] log likelihood: -112816.542557 EM: Round [56] log likelihood: -112816.541136 EM: Round [57] log likelihood: -112816.539800 EM: Round [58] log likelihood: -112816.538541 EM: Round [59] log likelihood: -112816.537353 EM: Round [60] log likelihood: -112816.536232 EM: Round [61] log likelihood: -112816.535171 EM: Round [62] log likelihood: -112816.534168 EM: Round [63] log likelihood: -112816.533218 EM: Round [64] log likelihood: -112816.532316 EM: Round [65] log likelihood: -112816.531460 EM: Round [66] log likelihood: -112816.530647 EM: Round [67] log likelihood: -112816.529874 EM: Round [68] log likelihood: -112816.529138 EM: Round [69] log likelihood: -112816.528436 EM: Round [70] log likelihood: -112816.527768 EM: Round [71] log likelihood: -112816.527129 EM: Round [72] log likelihood: -112816.526520 EM: Round [73] log likelihood: -112816.525937 EM: Round [74] log likelihood: -112816.525380 EM: Round [75] log likelihood: -112816.524846 EM: Round [76] log likelihood: -112816.524336 EM: Round [77] log likelihood: -112816.523846 EM: Round [78] log likelihood: -112816.523376 EM: Round [79] log likelihood: -112816.522926 EM: Round [80] log likelihood: -112816.522493 EM: Round [81] log likelihood: -112816.522078 EM: Round [82] log likelihood: -112816.521678 EM: Round [83] log likelihood: -112816.521294 EM: Round [84] log likelihood: -112816.520924 EM: Round [85] log likelihood: -112816.520568 EM: Round [86] log likelihood: -112816.520226 EM: Round [87] log likelihood: -112816.519895 EM: Round [88] log likelihood: -112816.519577 EM: Round [89] log likelihood: -112816.519270 EM: Round [90] log likelihood: -112816.518974 EM: Round [91] log likelihood: -112816.518688 EM: Round [92] log likelihood: -112816.518413 EM: Round [93] log likelihood: -112816.518146 EM: Round [94] log likelihood: -112816.517889 EM: Round [95] log likelihood: -112816.517640 EM: Round [96] log likelihood: -112816.517400 EM: Round [97] log likelihood: -112816.517167 EM: Round [98] log likelihood: -112816.516943 EM: Round [99] log likelihood: -112816.516725 EM: Round [100] log likelihood: -112816.516515 EM: Round [101] log likelihood: -112816.516311 EM: Round [102] log likelihood: -112816.516113 EM: Round [103] log likelihood: -112816.515922 EM: Round [104] log likelihood: -112816.515737 EM: Round [105] log likelihood: -112816.515558 EM: Round [106] log likelihood: -112816.515384 EM: Round [107] log likelihood: -112816.515215 EM: Round [108] log likelihood: -112816.515052 EM: Round [109] log likelihood: -112816.514894 EM: Round [110] log likelihood: -112816.514740 EM: Round [111] log likelihood: -112816.514591 EM: Round [112] log likelihood: -112816.514446 EM: Round [113] log likelihood: -112816.514306 EM: Round [114] log likelihood: -112816.514169 EM: Round [115] log likelihood: -112816.514037 EM: Round [116] log likelihood: -112816.513909 EM: Round [117] log likelihood: -112816.513784 EM: Round [118] log likelihood: -112816.513663 EM: Round [119] log likelihood: -112816.513545 EM: Round [120] log likelihood: -112816.513430 EM: Round [121] log likelihood: -112816.513319 EM: Round [122] log likelihood: -112816.513211 EM: Round [123] log likelihood: -112816.513106 EM: Round [124] log likelihood: -112816.513004 EM: Round [125] log likelihood: -112816.512905 EM: Stopping iterations at round 125 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 81322568 > /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir > /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir --annotate /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir -done, see /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 522, filtered: 6515) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.s3HI74ZYeN/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.s3HI74ZYeN/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000260236.1] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000205312.8] WARNING, no entry stored in dbm for [ENSG00000280383.1] WARNING, no entry stored in dbm for [ENSG00000286511.1] WARNING, no entry stored in dbm for [ENSG00000233290.3] WARNING, no entry stored in dbm for [ENSG00000216352.1] WARNING, no entry stored in dbm for [ENSG00000233325.3] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000180458.2] WARNING, no entry stored in dbm for [ENSG00000241015.2] WARNING, no entry stored in dbm for [ENSG00000264920.2] WARNING, no entry stored in dbm for [ENSG00000177410.13] WARNING, no entry stored in dbm for [ENSG00000263527.1] WARNING, no entry stored in dbm for [ENSG00000229124.7] WARNING, no entry stored in dbm for [ENSG00000159247.13] WARNING, no entry stored in dbm for [ENSG00000223429.1] WARNING, no entry stored in dbm for [ENSG00000258471.2] WARNING, no entry stored in dbm for [ENSG00000231058.1] WARNING, no entry stored in dbm for [ENSG00000257210.1] WARNING, no entry stored in dbm for [ENSG00000236107.10] WARNING, no entry stored in dbm for [ENSG00000264589.4] WARNING, no entry stored in dbm for [ENSG00000261126.7] WARNING, no entry stored in dbm for [ENSG00000280007.1] WARNING, no entry stored in dbm for [ENSG00000236200.6] WARNING, no entry stored in dbm for [ENSG00000225637.1] WARNING, no entry stored in dbm for [ENSG00000241286.2] WARNING, no entry stored in dbm for [ENSG00000233565.1] WARNING, no entry stored in dbm for [ENSG00000243964.1] WARNING, no entry stored in dbm for [ENSG00000213122.4] WARNING, no entry stored in dbm for [ENSG00000236148.5] WARNING, no entry stored in dbm for [ENSG00000230370.1] WARNING, no entry stored in dbm for [ENSG00000207357.1] WARNING, no entry stored in dbm for [ENSG00000263934.5] WARNING, no entry stored in dbm for [ENSG00000243562.3] WARNING, no entry stored in dbm for [ENSG00000244732.3] WARNING, no entry stored in dbm for [ENSG00000244056.3] WARNING, no entry stored in dbm for [ENSG00000239437.3] WARNING, no entry stored in dbm for [ENSG00000244642.3] WARNING, no entry stored in dbm for [ENSG00000240106.2] WARNING, no entry stored in dbm for [ENSG00000244642.3] WARNING, no entry stored in dbm for [ENSG00000207269.1] WARNING, no entry stored in dbm for [ENSG00000201201.1] WARNING, no entry stored in dbm for [ENSG00000259230.1] WARNING, no entry stored in dbm for [ENSG00000215231.8] WARNING, no entry stored in dbm for [ENSG00000235438.7] WARNING, no entry stored in dbm for [ENSG00000227115.8] WARNING, no entry stored in dbm for [ENSG00000268062.1] WARNING, no entry stored in dbm for [ENSG00000270025.2] WARNING, no entry stored in dbm for [ENSG00000230461.9] WARNING, no entry stored in dbm for [ENSG00000259948.2] WARNING, no entry stored in dbm for [ENSG00000161643.13] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000233705.7] WARNING, no entry stored in dbm for [ENSG00000255980.1] WARNING, no entry stored in dbm for [ENSG00000229619.4] WARNING, no entry stored in dbm for [ENSG00000287810.1] WARNING, no entry stored in dbm for [ENSG00000236501.6] WARNING, no entry stored in dbm for [ENSG00000284914.1] WARNING, no entry stored in dbm for [ENSG00000244479.7] WARNING, no entry stored in dbm for [ENSG00000204959.4] WARNING, no entry stored in dbm for [ENSG00000259374.2] WARNING, no entry stored in dbm for [ENSG00000259374.2] WARNING, no entry stored in dbm for [ENSG00000277047.5] WARNING, no entry stored in dbm for [ENSG00000215866.8] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000244471.6] WARNING, no entry stored in dbm for [ENSG00000226673.2] WARNING, no entry stored in dbm for [ENSG00000237076.1] WARNING, no entry stored in dbm for [ENSG00000261286.1] WARNING, no entry stored in dbm for [ENSG00000254934.5] WARNING, no entry stored in dbm for [ENSG00000285462.1] WARNING, no entry stored in dbm for [ENSG00000286733.1] WARNING, no entry stored in dbm for [ENSG00000231721.7] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000224699.9] WARNING, no entry stored in dbm for [ENSG00000259489.2] WARNING, no entry stored in dbm for [ENSG00000253866.1] WARNING, no entry stored in dbm for [ENSG00000272913.1] WARNING, no entry stored in dbm for [ENSG00000254871.1] WARNING, no entry stored in dbm for [ENSG00000281778.1] WARNING, no entry stored in dbm for [ENSG00000261457.3] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000281392.2] WARNING, no entry stored in dbm for [ENSG00000248265.2] WARNING, no entry stored in dbm for [ENSG00000236567.2] WARNING, no entry stored in dbm for [ENSG00000243319.7] WARNING, no entry stored in dbm for [ENSG00000229231.1] WARNING, no entry stored in dbm for [ENSG00000232860.8] WARNING, no entry stored in dbm for [ENSG00000225393.1] WARNING, no entry stored in dbm for [ENSG00000234690.7] WARNING, no entry stored in dbm for [ENSG00000182912.6] WARNING, no entry stored in dbm for [ENSG00000226688.7] WARNING, no entry stored in dbm for [ENSG00000263883.1] WARNING, no entry stored in dbm for [ENSG00000232811.1] WARNING, no entry stored in dbm for [ENSG00000279971.1] WARNING, no entry stored in dbm for [ENSG00000233937.7] WARNING, no entry stored in dbm for [ENSG00000279973.2] WARNING, no entry stored in dbm for [ENSG00000233937.7] WARNING, no entry stored in dbm for [ENSG00000187172.15] WARNING, no entry stored in dbm for [ENSG00000233937.7] WARNING, no entry stored in dbm for [ENSG00000248103.1] WARNING, no entry stored in dbm for [ENSG00000205853.12] WARNING, no entry stored in dbm for [ENSG00000283541.1] WARNING, no entry stored in dbm for [ENSG00000268189.2] WARNING, no entry stored in dbm for [ENSG00000228221.6] WARNING, no entry stored in dbm for [ENSG00000224809.2] WARNING, no entry stored in dbm for [ENSG00000235510.1] WARNING, no entry stored in dbm for [ENSG00000185710.9] WARNING, no entry stored in dbm for [ENSG00000287586.1] WARNING, no entry stored in dbm for [ENSG00000279631.1] WARNING, no entry stored in dbm for [ENSG00000276185.1] WARNING, no entry stored in dbm for [ENSG00000250838.1] WARNING, no entry stored in dbm for [ENSG00000230223.8] WARNING, no entry stored in dbm for [ENSG00000244198.7] WARNING, no entry stored in dbm for [ENSG00000186466.5] WARNING, no entry stored in dbm for [ENSG00000254573.1] WARNING, no entry stored in dbm for [ENSG00000256462.1] WARNING, no entry stored in dbm for [ENSG00000240291.1] WARNING, no entry stored in dbm for [ENSG00000273481.1] WARNING, no entry stored in dbm for [ENSG00000275503.1] WARNING, no entry stored in dbm for [ENSG00000177788.6] WARNING, no entry stored in dbm for [ENSG00000286117.2] WARNING, no entry stored in dbm for [ENSG00000285205.2] WARNING, no entry stored in dbm for [ENSG00000230922.1] WARNING, no entry stored in dbm for [ENSG00000261819.1] WARNING, no entry stored in dbm for [ENSG00000229890.1] WARNING, no entry stored in dbm for [ENSG00000203413.3] WARNING, no entry stored in dbm for [ENSG00000254319.6] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for [ENSG00000261810.1] WARNING, no entry stored in dbm for [ENSG00000287090.1] WARNING, no entry stored in dbm for [ENSG00000279048.1] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000250748.6] WARNING, no entry stored in dbm for [ENSG00000258419.1] WARNING, no entry stored in dbm for [ENSG00000231409.3] WARNING, no entry stored in dbm for [ENSG00000240366.1] WARNING, no entry stored in dbm for [ENSG00000278972.1] WARNING, no entry stored in dbm for [ENSG00000288585.1] WARNING, no entry stored in dbm for [ENSG00000248560.1] WARNING, no entry stored in dbm for [ENSG00000274525.1] WARNING, no entry stored in dbm for [ENSG00000187172.15] WARNING, no entry stored in dbm for [ENSG00000274525.1] WARNING, no entry stored in dbm for [ENSG00000248103.1] WARNING, no entry stored in dbm for [ENSG00000233397.3] WARNING, no entry stored in dbm for [ENSG00000239809.1] WARNING, no entry stored in dbm for [ENSG00000244331.1] WARNING, no entry stored in dbm for [ENSG00000257261.6] WARNING, no entry stored in dbm for [ENSG00000262202.4] WARNING, no entry stored in dbm for [ENSG00000250770.3] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000248618.1] * STAR-Fusion complete. See output: /tmp/nxf.s3HI74ZYeN/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)