Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6b8ed2af8db4aec0135c02d1be12b3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/3e8a82e76bbc12a902ec65f52defc1/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6b8ed2af8db4aec0135c02d1be12b3/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory