Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8d54d71dfa91d3ce8aaa99e9e35259/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9f62ec4792ec6e60146f3cf22afa31/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9f62ec4792ec6e60146f3cf22afa31/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8d54d71dfa91d3ce8aaa99e9e35259/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory