.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (786-O_FFPE_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/ddd2a6ef420d1e48b983985baa0db9/.command.log
Size: 508 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (786-O_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/abd7ff417ef5be3d21bbf36a85e1c4/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/ddd2a6ef420d1e48b983985baa0db9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/ddd2a6ef420d1e48b983985baa0db9/.command.sh
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory