.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/ef8af9b1f003918b109db985f2b544/.command.log
Size: 738 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/243b6457d1ae30d693c779f4a7188b/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/ef8af9b1f003918b109db985f2b544/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/ef8af9b1f003918b109db985f2b544/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2: vaf_p90=1.000000 -> CLEAN

Output saved to: SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.predictions.csv
Summary: 0/1 samples flagged as contaminated