Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/c9d08ed8bdfdb6136dc1aa50bd1fdb/A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0d233eec3bf72c0cb118053b974441/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0d233eec3bf72c0cb118053b974441/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292156094
unpaired = 4834893
MERGED PAIRED END READS = 292156094
MATES PROCESSED = 589147081
TOTAL READS     = 296990987
DISTINCT READS  = 1.65854e+08
DISTINCT COUNTS = 798
MAX COUNT       = 1013536
COUNTS OF 1     = 1.09359e+08
MAX TERMS       = 100
OBSERVED COUNTS (1013537)
1	109358621
2	32476064
3	11595982
4	4955567
5	2487152
6	1409593
7	880009
8	588966
9	414616
10	302457
11	227712
12	176023
13	138956
14	112341
15	90962
16	75512
17	62759
18	53211
19	45192
20	38575
21	33754
22	29176
23	25295
24	22349
25	19924
26	17645
27	15858
28	14118
29	12909
30	11485
31	10452
32	9506
33	8278
34	7916
35	7193
36	6568
37	6136
38	5717
39	5121
40	4789
41	4532
42	4278
43	3842
44	3561
45	3347
46	3103
47	2901
48	2771
49	2639
50	2404
51	2251
52	2119
53	2044
54	1903
55	1730
56	1759
57	1590
58	1597
59	1472
60	1456
61	1313
62	1275
63	1255
64	1153
65	1082
66	1007
67	965
68	947
69	905
70	853
71	756
72	808
73	741
74	726
75	704
76	687
77	590
78	625
79	612
80	555
81	503
82	529
83	531
84	458
85	475
86	435
87	433
88	445
89	417
90	409
91	403
92	375
93	376
94	350
95	319
96	380
97	286
98	282
99	288
100	301
101	270
102	255
103	249
104	259
105	250
106	257
107	246
108	219
109	219
110	230
111	206
112	186
113	197
114	194
115	148
116	179
117	155
118	136
119	147
120	142
121	167
122	134
123	142
124	143
125	145
126	147
127	140
128	133
129	131
130	98
131	123
132	120
133	120
134	121
135	104
136	89
137	105
138	77
139	76
140	88
141	78
142	90
143	81
144	92
145	87
146	95
147	67
148	78
149	68
150	72
151	71
152	72
153	73
154	80
155	75
156	73
157	89
158	62
159	65
160	52
161	55
162	72
163	58
164	61
165	67
166	51
167	55
168	56
169	47
170	39
171	61
172	52
173	49
174	55
175	48
176	40
177	37
178	52
179	44
180	47
181	27
182	43
183	35
184	33
185	43
186	45
187	30
188	47
189	47
190	43
191	32
192	35
193	39
194	44
195	33
196	37
197	34
198	37
199	34
200	35
201	31
202	24
203	34
204	31
205	27
206	29
207	23
208	28
209	35
210	30
211	29
212	28
213	27
214	23
215	34
216	28
217	29
218	24
219	29
220	27
221	26
222	21
223	27
224	27
225	27
226	19
227	16
228	16
229	22
230	16
231	25
232	16
233	19
234	28
235	21
236	18
237	16
238	18
239	14
240	12
241	17
242	16
243	19
244	13
245	20
246	23
247	15
248	14
249	14
250	18
251	23
252	14
253	15
254	11
255	14
256	16
257	19
258	11
259	10
260	15
261	8
262	14
263	15
264	12
265	13
266	16
267	13
268	19
269	12
270	10
271	9
272	8
273	12
274	10
275	12
276	8
277	16
278	12
279	12
280	15
281	7
282	8
283	12
284	11
285	11
286	13
287	9
288	10
289	8
290	10
291	15
292	4
293	7
294	5
295	10
296	11
297	6
298	6
299	6
300	3
301	9
302	9
303	6
304	8
305	7
306	13
307	8
308	13
309	10
310	4
311	6
312	6
313	5
314	7
315	8
316	6
317	10
318	4
319	4
320	8
321	11
322	7
323	6
324	5
325	5
326	9
327	4
328	6
329	11
330	2
331	11
332	5
333	3
334	6
335	9
336	7
337	6
338	5
339	7
340	6
341	3
342	6
343	6
344	6
345	1
346	4
347	6
348	5
349	8
350	5
351	3
352	8
353	5
354	7
355	8
356	1
357	7
358	3
359	5
360	8
361	11
362	4
363	3
364	7
365	2
366	1
367	6
368	3
369	1
370	1
371	3
372	9
373	5
374	3
375	5
376	2
377	6
378	5
379	6
380	3
381	3
382	7
383	1
384	5
385	6
386	5
387	4
388	2
389	6
390	2
391	5
392	1
393	1
395	4
396	1
397	3
398	5
399	4
400	5
402	4
403	2
404	2
405	5
406	3
407	2
408	2
409	4
410	5
411	7
412	3
413	2
414	2
415	3
416	6
417	1
418	1
419	4
420	3
421	3
422	2
423	2
424	3
426	4
427	3
428	1
430	3
431	4
433	1
434	2
435	1
437	5
438	3
439	5
440	2
441	3
442	4
444	1
445	3
446	3
447	1
448	2
449	3
450	1
451	4
452	5
453	1
454	3
455	2
456	2
457	1
458	4
459	2
461	1
462	1
463	2
464	1
467	2
469	3
470	1
471	1
472	3
474	3
475	3
476	1
477	2
478	3
479	2
480	2
481	4
482	2
483	2
484	2
486	1
487	2
488	6
489	3
490	3
493	3
494	4
495	1
496	2
497	1
498	1
499	1
501	1
502	3
503	2
504	1
505	1
506	1
507	2
508	1
509	1
510	1
512	4
513	4
514	1
515	1
516	2
518	1
519	1
522	1
523	1
526	2
528	1
529	1
531	2
532	1
533	2
536	1
538	1
539	1
540	1
541	1
543	1
545	1
546	1
547	1
548	2
549	1
550	1
551	1
553	2
554	1
555	1
557	1
558	4
559	1
560	3
561	1
562	2
563	1
564	1
565	1
567	3
568	1
569	1
571	3
572	1
573	1
574	3
575	2
576	1
578	1
579	2
580	1
582	1
583	1
584	1
587	1
588	3
590	1
591	5
593	2
596	1
598	1
599	2
600	1
602	3
604	1
605	2
606	2
607	1
608	1
609	2
611	1
612	1
614	1
618	3
620	1
624	1
626	2
627	2
628	1
630	1
632	1
633	1
635	1
636	1
637	1
640	3
641	1
642	2
647	1
648	1
651	1
652	2
653	1
654	1
655	2
659	1
662	1
663	1
665	1
666	2
668	2
670	3
671	1
672	2
677	2
678	1
679	3
680	1
685	1
688	1
690	1
695	1
699	1
700	2
701	1
702	1
708	1
709	1
710	1
711	1
713	1
715	2
717	1
721	1
723	1
724	1
725	2
730	1
731	1
732	1
733	2
734	1
737	1
743	1
752	1
754	1
755	1
756	1
757	1
760	1
763	1
767	1
770	1
774	1
776	2
778	1
781	1
784	1
786	1
791	1
803	1
807	1
809	1
811	1
812	1
813	1
815	1
820	1
823	1
836	1
838	1
839	2
840	1
841	1
844	1
847	2
849	1
851	1
853	1
859	1
862	1
867	2
868	1
869	1
873	1
875	1
889	1
894	1
898	1
901	1
904	1
906	2
911	1
914	1
918	1
919	1
921	1
932	1
943	1
966	3
970	1
973	1
975	1
987	1
995	1
1002	1
1013	1
1024	1
1025	1
1028	1
1032	2
1033	1
1036	1
1037	1
1058	1
1073	1
1081	1
1083	1
1088	2
1100	1
1101	1
1107	1
1108	1
1112	1
1114	1
1116	1
1132	1
1140	1
1143	1
1147	1
1156	1
1165	1
1170	1
1184	1
1212	1
1224	1
1255	1
1274	1
1305	1
1328	1
1335	1
1341	1
1349	1
1351	1
1358	1
1380	1
1381	1
1414	1
1423	1
1427	1
1429	1
1437	1
1474	1
1476	1
1479	1
1485	1
1496	1
1517	1
1523	1
1539	3
1541	1
1557	2
1576	1
1592	2
1593	1
1597	1
1610	1
1615	1
1616	1
1643	1
1671	1
1696	1
1705	1
1720	1
1730	1
1736	1
1746	1
1760	1
1778	1
1780	1
1784	1
1792	1
1808	1
1872	1
1969	1
1991	1
2026	1
2105	1
2110	1
2131	1
2159	1
2277	1
2281	1
2283	1
2351	1
2383	1
2465	1
2559	1
2569	1
2632	1
2721	1
2826	1
2896	1
3104	1
3144	1
4703	1
4952	1
6445	1
9338	1
9530	1
10907	1
33192	1
1013536	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....................................._.._..._............_.........._...
....._...................._........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]