Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/ffc389899813e83447a84211055b1a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/ffc389899813e83447a84211055b1a/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/d4c8b5afe08cd46361b538a8d10336/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:29:34.954 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:29:34 GMT 2026] MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:29:34 GMT 2026] Executing as ?@nf-bfffc389899813e83447a84211055b1a-25a5d-p8h2x on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:29:35 MarkDuplicates Start of doWork freeMemory: 105829464; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:29:35 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:29:35 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,049,682
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 4314 as yet unmatched pairs. 1941 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,523,556
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 5095 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,647,467
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 7338 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:7,969,363
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 12088 as yet unmatched pairs. 2673 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,731,380
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 11673 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,243,134
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 14114 as yet unmatched pairs. 574 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:15,427,226
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 15823 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:16,391,374
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 18647 as yet unmatched pairs. 1039 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:18,908,619
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 21019 as yet unmatched pairs. 1405 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:19,485,449
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 21741 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,091,460
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 25022 as yet unmatched pairs. 1253 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:24,652,521
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 26154 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:26,774,602
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 28280 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:28,553,727
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 30269 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:31,756,617
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 33089 as yet unmatched pairs. 989 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:32,826,438
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 34748 as yet unmatched pairs. 472 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:35,738,487
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 36830 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:37,857,571
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 38829 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,428,060
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 42294 as yet unmatched pairs. 1707 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:40,092,056
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 42820 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:42,752,600
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 44758 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:43,667,931
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 47157 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:45,511,282
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 52349 as yet unmatched pairs. 3127 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:46,665,337
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 51603 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:53,260,505
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 54037 as yet unmatched pairs. 750 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:61,694,730
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 55909 as yet unmatched pairs. 513 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:70,433,884
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 57381 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,429
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 60965 as yet unmatched pairs. 1828 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:93,567,387
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 61262 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:98,661,711
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 63082 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:103,031,156
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 65665 as yet unmatched pairs. 749 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:109,355,437
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 68564 as yet unmatched pairs. 1573 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:112,654,658
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 69756 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:114,464,334
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 72423 as yet unmatched pairs. 1469 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:116,390,353
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 77356 as yet unmatched pairs. 4396 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:117,075,262
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 75490 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,299
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 81551 as yet unmatched pairs. 4514 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:119,919,379
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 87462 as yet unmatched pairs. 8417 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:119,929,129
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 85586 as yet unmatched pairs. 4551 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:119,963,628
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 89001 as yet unmatched pairs. 5902 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:120,156,995
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 88809 as yet unmatched pairs. 3664 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:120,701,072
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 86571 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:145,233,400
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 87602 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:146,985,733
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 89080 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:148,873,480
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 89915 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:149,813,338
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 91670 as yet unmatched pairs. 1357 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:149,945,025
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 92144 as yet unmatched pairs. 386 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:151,239,134
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 94430 as yet unmatched pairs. 740 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:152,310,273
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 95653 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,424
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 109780 as yet unmatched pairs. 12445 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:154,932,351
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 99928 as yet unmatched pairs. 800 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:155,198,437
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 101537 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:155,614,082
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 103770 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,051,740
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 105534 as yet unmatched pairs. 427 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:156,139,746
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 108100 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:156,672,843
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 112494 as yet unmatched pairs. 2818 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:160,222,717
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 112021 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:164,799,773
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 114137 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:171,535,578
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 116020 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:178,458,308
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 118245 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:183,103,408
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 120181 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:186,335,478
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 122244 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:200,605,283
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 124085 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:203,022,952
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 125811 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:205,795,441
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 127975 as yet unmatched pairs. 330 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:212,692,145
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 129536 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:219,969,066
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 131505 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:224,411,486
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 134178 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:226,071,732
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 135156 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:229,326,951
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 137600 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:235,182,270
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 139925 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:243,668,804
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 144120 as yet unmatched pairs. 2215 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr1:247,329,283
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 144447 as yet unmatched pairs. 519 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:9,588,259
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 147506 as yet unmatched pairs. 145681 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:15,623,455
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 148267 as yet unmatched pairs. 146418 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:24,711,060
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 151055 as yet unmatched pairs. 149182 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:27,071,365
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 152166 as yet unmatched pairs. 150261 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:28,404,348
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 155563 as yet unmatched pairs. 153646 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:28,781,814
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 183344 as yet unmatched pairs. 181400 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:32,392,075
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 158992 as yet unmatched pairs. 157033 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 220654 as yet unmatched pairs. 150966 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 852969 as yet unmatched pairs. 92727 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 1036201 as yet unmatched pairs. 75418 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:32,947,778
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1110137 as yet unmatched pairs. 68996 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:37,646,360
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 1109580 as yet unmatched pairs. 68424 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:43,974,720
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 1106348 as yet unmatched pairs. 65159 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:53,901,471
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 1104326 as yet unmatched pairs. 63093 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:55,316,010
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 1102850 as yet unmatched pairs. 61591 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:61,481,256
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 1100639 as yet unmatched pairs. 59352 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:68,526,152
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 1098450 as yet unmatched pairs. 57128 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:71,349,215
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 1096739 as yet unmatched pairs. 55395 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:74,366,244
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1094728 as yet unmatched pairs. 53347 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,243
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 1092676 as yet unmatched pairs. 51271 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:88,627,144
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 1090694 as yet unmatched pairs. 49271 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:96,828,577
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 1089129 as yet unmatched pairs. 47667 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:101,266,839
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 1087205 as yet unmatched pairs. 45708 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:108,675,877
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 1086470 as yet unmatched pairs. 44940 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:109,794,304
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 1083939 as yet unmatched pairs. 42395 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:111,794,820
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 1083542 as yet unmatched pairs. 41980 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:113,939,958
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 1082616 as yet unmatched pairs. 41035 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:130,140,318
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 1079779 as yet unmatched pairs. 38170 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:135,126,641
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 1077928 as yet unmatched pairs. 36255 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:149,007,981
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1075976 as yet unmatched pairs. 34252 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:159,228,886
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 1074398 as yet unmatched pairs. 32637 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:170,752,053
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1072006 as yet unmatched pairs. 30218 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:175,118,260
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1070837 as yet unmatched pairs. 29020 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:181,529,556
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1068291 as yet unmatched pairs. 26460 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:189,078,525
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1066942 as yet unmatched pairs. 25085 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:197,401,496
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 1064642 as yet unmatched pairs. 22760 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:202,210,735
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 1064272 as yet unmatched pairs. 22366 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:205,763,909
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1063067 as yet unmatched pairs. 21146 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:213,284,466
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 1058772 as yet unmatched pairs. 16825 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:216,660,640
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 1060204 as yet unmatched pairs. 18240 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:219,218,458
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 1055199 as yet unmatched pairs. 13214 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:219,632,949
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1052201 as yet unmatched pairs. 10190 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:229,858,951
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 1050588 as yet unmatched pairs. 8528 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:233,441,933
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 1048305 as yet unmatched pairs. 6221 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:238,427,034
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1046151 as yet unmatched pairs. 4032 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:241,238,706
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1044046 as yet unmatched pairs. 1888 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:9,429,567
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 1041746 as yet unmatched pairs. 65934 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:12,591,756
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 1041012 as yet unmatched pairs. 65181 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,589
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1037799 as yet unmatched pairs. 61940 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:31,579,923
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 1036706 as yet unmatched pairs. 60820 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:37,148,893
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1034210 as yet unmatched pairs. 58297 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,996
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1036034 as yet unmatched pairs. 60103 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:45,931,270
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1029987 as yet unmatched pairs. 54021 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:47,847,256
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 1028301 as yet unmatched pairs. 52314 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:48,601,352
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1026904 as yet unmatched pairs. 50895 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:49,098,059
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 1023819 as yet unmatched pairs. 47796 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:49,368,444
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 1023104 as yet unmatched pairs. 47059 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:50,214,188
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 1021372 as yet unmatched pairs. 45316 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:51,419,968
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1017284 as yet unmatched pairs. 41209 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:52,524,606
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 1015737 as yet unmatched pairs. 39639 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:53,234,972
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 1014506 as yet unmatched pairs. 38387 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:58,107,122
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1011289 as yet unmatched pairs. 35130 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:67,375,839
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1008873 as yet unmatched pairs. 32681 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:89,449,283
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 1007767 as yet unmatched pairs. 31543 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:100,375,018
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 1005053 as yet unmatched pairs. 28799 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:111,198,277
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1003221 as yet unmatched pairs. 26930 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:121,718,447
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1001601 as yet unmatched pairs. 25272 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:124,873,473
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 1000130 as yet unmatched pairs. 23779 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:128,764,958
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 997744 as yet unmatched pairs. 21356 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:132,477,986
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 995065 as yet unmatched pairs. 18657 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:141,444,466
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 993333 as yet unmatched pairs. 16897 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:149,741,602
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 990966 as yet unmatched pairs. 14517 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:160,417,775
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 989250 as yet unmatched pairs. 12760 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:179,333,858
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 987243 as yet unmatched pairs. 10719 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:184,164,356
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 985356 as yet unmatched pairs. 8803 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:184,328,643
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 983715 as yet unmatched pairs. 7141 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:188,406,125
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 982511 as yet unmatched pairs. 5913 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,068
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 979238 as yet unmatched pairs. 2604 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:197,297,786
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 977365 as yet unmatched pairs. 721 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr4:1,212,992
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 976885 as yet unmatched pairs. 46862 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:1,799,440
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 973066 as yet unmatched pairs. 43024 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:2,931,825
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 970471 as yet unmatched pairs. 40403 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:7,768,962
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 970779 as yet unmatched pairs. 40695 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr4:15,612,367
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 966468 as yet unmatched pairs. 36353 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:29,173,985
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 964206 as yet unmatched pairs. 34061 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:41,261,752
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 967703 as yet unmatched pairs. 37520 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:52,023,794
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 960506 as yet unmatched pairs. 30302 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:56,382,558
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 958822 as yet unmatched pairs. 28589 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:57,032,510
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 966843 as yet unmatched pairs. 36590 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:67,646,751
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 954246 as yet unmatched pairs. 23965 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:75,793,797
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 953054 as yet unmatched pairs. 22750 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:82,428,147
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 950962 as yet unmatched pairs. 20648 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:87,982,610
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 959150 as yet unmatched pairs. 28821 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:103,163,136
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 946617 as yet unmatched pairs. 16271 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr4:118,352,621
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 944802 as yet unmatched pairs. 14432 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr4:124,678,733
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 942981 as yet unmatched pairs. 12587 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,602
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 940876 as yet unmatched pairs. 10452 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,220
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 940041 as yet unmatched pairs. 9583 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr4:158,253,443
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 936986 as yet unmatched pairs. 6507 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr4:168,925,023
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 937605 as yet unmatched pairs. 7100 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr4:183,249,977
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 934169 as yet unmatched pairs. 3633 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:186,628,237
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 931611 as yet unmatched pairs. 1063 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr5:3,599,967
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 929102 as yet unmatched pairs. 63549 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:14,280,333
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 929164 as yet unmatched pairs. 63586 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:14,479,951
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 926496 as yet unmatched pairs. 60909 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr5:32,126,386
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 922969 as yet unmatched pairs. 57344 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:38,481,907
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 920743 as yet unmatched pairs. 55086 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:55,160,217
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 919034 as yet unmatched pairs. 53349 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:65,597,049
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 917038 as yet unmatched pairs. 51329 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:71,458,599
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 915961 as yet unmatched pairs. 50232 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:72,199,063
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 914280 as yet unmatched pairs. 48535 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:74,705,274
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 912646 as yet unmatched pairs. 46886 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:80,651,193
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 910397 as yet unmatched pairs. 44621 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:83,580,307
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 908952 as yet unmatched pairs. 43169 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,675
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 906580 as yet unmatched pairs. 40767 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,968
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 905726 as yet unmatched pairs. 39893 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:112,887,052
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 903200 as yet unmatched pairs. 37337 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:124,649,629
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 901066 as yet unmatched pairs. 35185 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr5:132,764,388
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 899770 as yet unmatched pairs. 33863 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:134,887,804
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 897175 as yet unmatched pairs. 31241 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr5:138,467,565
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 896405 as yet unmatched pairs. 30457 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr5:140,042,725
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 893267 as yet unmatched pairs. 27308 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:141,216,019
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 891271 as yet unmatched pairs. 25230 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:141,510,965
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 889645 as yet unmatched pairs. 23601 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:146,271,605
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 887095 as yet unmatched pairs. 21029 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:150,396,529
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 885315 as yet unmatched pairs. 19231 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:151,673,177
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 887486 as yet unmatched pairs. 21388 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:157,493,077
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 881879 as yet unmatched pairs. 15767 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:168,098,091
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 879701 as yet unmatched pairs. 13559 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,986
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 893189 as yet unmatched pairs. 27029 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr5:172,670,074
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 876002 as yet unmatched pairs. 9820 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr5:177,306,149
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 874206 as yet unmatched pairs. 7999 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,925
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 873331 as yet unmatched pairs. 7111 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr5:179,823,870
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 872990 as yet unmatched pairs. 6757 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,980
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 868913 as yet unmatched pairs. 2666 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr6:4,776,667
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 864823 as yet unmatched pairs. 68328 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:11,193,638
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 863429 as yet unmatched pairs. 66921 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:18,225,692
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 861552 as yet unmatched pairs. 65011 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,491
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 858935 as yet unmatched pairs. 62372 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:27,133,361
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 856577 as yet unmatched pairs. 59998 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,312
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 861282 as yet unmatched pairs. 64683 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:30,724,861
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 852684 as yet unmatched pairs. 56071 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,625,554
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 850853 as yet unmatched pairs. 54218 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,687,612
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 848739 as yet unmatched pairs. 52090 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,127,503
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 847155 as yet unmatched pairs. 50495 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:33,406,472
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 845020 as yet unmatched pairs. 48349 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr6:34,858,861
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 842614 as yet unmatched pairs. 45928 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:36,970,086
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 843167 as yet unmatched pairs. 46453 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr6:42,938,135
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 838525 as yet unmatched pairs. 41791 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:43,568,710
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 836227 as yet unmatched pairs. 39488 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:47,285,949
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 834070 as yet unmatched pairs. 37300 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:56,463,069
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 832694 as yet unmatched pairs. 35882 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:56,617,160
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 831107 as yet unmatched pairs. 34285 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:73,518,206
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 828889 as yet unmatched pairs. 32042 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:79,513,382
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 826523 as yet unmatched pairs. 29657 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:88,142,107
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 827517 as yet unmatched pairs. 30635 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:98,834,914
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 823227 as yet unmatched pairs. 26331 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:107,893,843
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 821039 as yet unmatched pairs. 24119 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:112,191,741
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 818945 as yet unmatched pairs. 21995 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:121,170,448
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 816281 as yet unmatched pairs. 19307 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr6:129,578,527
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 814666 as yet unmatched pairs. 17668 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr6:134,029,533
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 813587 as yet unmatched pairs. 16575 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:143,844,596
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 810451 as yet unmatched pairs. 13413 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr6:149,701,904
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 808600 as yet unmatched pairs. 11553 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:152,215,017
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 806553 as yet unmatched pairs. 9488 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr6:158,325,845
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 804608 as yet unmatched pairs. 7525 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,534
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 810931 as yet unmatched pairs. 13842 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr6:163,415,179
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 803622 as yet unmatched pairs. 6518 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr6:163,570,740
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 802485 as yet unmatched pairs. 5370 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr7:843,379
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 796395 as yet unmatched pairs. 76426 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:2,542,192
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 794459 as yet unmatched pairs. 74464 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,343
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 791738 as yet unmatched pairs. 71725 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 67s. Last read position: chr7:5,528,040
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 812193 as yet unmatched pairs. 92158 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,265
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 803124 as yet unmatched pairs. 83072 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:6,256,626
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 784697 as yet unmatched pairs. 64627 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:18,585,356
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 783123 as yet unmatched pairs. 63040 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:26,184,825
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 781066 as yet unmatched pairs. 60952 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:31,790,134
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 779833 as yet unmatched pairs. 59691 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr7:38,772,524
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 777147 as yet unmatched pairs. 56978 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr7:44,059,539
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 775770 as yet unmatched pairs. 55586 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:45,072,774
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 773062 as yet unmatched pairs. 52853 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,719
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 771808 as yet unmatched pairs. 51584 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:65,974,341
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 769172 as yet unmatched pairs. 48933 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr7:72,942,136
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 767751 as yet unmatched pairs. 47486 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:73,510,747
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 766725 as yet unmatched pairs. 46456 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr7:74,832,661
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 764287 as yet unmatched pairs. 43998 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:75,790,137
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 762623 as yet unmatched pairs. 42312 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:77,040,012
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 760779 as yet unmatched pairs. 40455 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:91,045,930
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 759094 as yet unmatched pairs. 38744 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr7:92,610,288
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 757118 as yet unmatched pairs. 36753 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr7:94,663,857
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 759115 as yet unmatched pairs. 38737 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:98,204,065
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 753085 as yet unmatched pairs. 32687 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:99,547,755
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 750875 as yet unmatched pairs. 30455 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr7:100,433,330
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 749115 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr7:101,088,487
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 746524 as yet unmatched pairs. 26065 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr7:102,553,314
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 747294 as yet unmatched pairs. 26816 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr7:105,146,596
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 743970 as yet unmatched pairs. 23480 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr7:113,117,386
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 742154 as yet unmatched pairs. 21645 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr7:123,692,379
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 740127 as yet unmatched pairs. 19605 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr7:128,086,938
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 741088 as yet unmatched pairs. 20555 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr7:130,175,539
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 736376 as yet unmatched pairs. 15826 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr7:134,965,328
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 736800 as yet unmatched pairs. 16218 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr7:138,869,723
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 732735 as yet unmatched pairs. 12140 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr7:140,459,054
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 730587 as yet unmatched pairs. 9973 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr7:147,300,564
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 728325 as yet unmatched pairs. 7700 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr7:151,054,282
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 726490 as yet unmatched pairs. 5841 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr7:151,595,382
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 723708 as yet unmatched pairs. 3048 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr7:157,367,481
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 721888 as yet unmatched pairs. 1213 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,117
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 720922 as yet unmatched pairs. 33454 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:22,107,840
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 717559 as yet unmatched pairs. 30078 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr8:23,432,907
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 715558 as yet unmatched pairs. 28065 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr8:30,689,296
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 713594 as yet unmatched pairs. 26091 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr8:38,522,814
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 711240 as yet unmatched pairs. 23725 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr8:42,290,233
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 709544 as yet unmatched pairs. 22015 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr8:53,946,689
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 707382 as yet unmatched pairs. 19832 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:69,130,275
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 705349 as yet unmatched pairs. 17774 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:88,041,617
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 703639 as yet unmatched pairs. 16048 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:100,713,093
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 702542 as yet unmatched pairs. 14934 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr8:118,110,976
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 700083 as yet unmatched pairs. 12446 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,241
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 698112 as yet unmatched pairs. 10459 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr8:140,837,724
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 696275 as yet unmatched pairs. 8591 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,234
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 694344 as yet unmatched pairs. 6639 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr8:144,082,779
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 691120 as yet unmatched pairs. 3405 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr8:144,517,482
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 688527 as yet unmatched pairs. 802 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr9:3,879,507
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 686667 as yet unmatched pairs. 49108 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr9:9,442,156
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 684060 as yet unmatched pairs. 46447 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr9:15,192,591
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 682456 as yet unmatched pairs. 44826 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:32,091,023
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 680441 as yet unmatched pairs. 42788 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:34,614,060
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 680049 as yet unmatched pairs. 42384 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr9:35,710,851
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 676953 as yet unmatched pairs. 39277 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:37,784,043
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 674403 as yet unmatched pairs. 36668 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:68,247,612
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 673045 as yet unmatched pairs. 35289 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr9:77,370,543
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 671258 as yet unmatched pairs. 33492 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr9:92,265,034
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 670017 as yet unmatched pairs. 32238 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:97,475,448
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 667314 as yet unmatched pairs. 29522 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:106,929,294
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 665588 as yet unmatched pairs. 27777 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:113,583,758
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 663544 as yet unmatched pairs. 25704 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr9:115,086,897
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 662642 as yet unmatched pairs. 24789 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:122,877,493
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 659820 as yet unmatched pairs. 21953 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr9:127,447,877
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 657968 as yet unmatched pairs. 20079 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr9:128,261,521
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 655359 as yet unmatched pairs. 17452 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr9:128,959,123
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 653305 as yet unmatched pairs. 15373 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr9:130,862,942
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 651964 as yet unmatched pairs. 14011 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr9:131,597,181
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 649151 as yet unmatched pairs. 11182 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr9:134,033,570
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 647660 as yet unmatched pairs. 9663 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr9:136,011,993
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 645327 as yet unmatched pairs. 7308 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr9:136,837,358
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 644246 as yet unmatched pairs. 6215 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,508
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 639920 as yet unmatched pairs. 1878 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr10:3,783,703
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 637437 as yet unmatched pairs. 31099 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,847
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 635961 as yet unmatched pairs. 29614 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:31,807,628
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 633642 as yet unmatched pairs. 27269 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr10:43,644,720
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 631816 as yet unmatched pairs. 25436 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr10:52,315,011
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 632879 as yet unmatched pairs. 26489 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr10:68,572,968
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 628291 as yet unmatched pairs. 21895 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr10:72,613,580
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 626034 as yet unmatched pairs. 19615 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr10:75,399,626
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 624444 as yet unmatched pairs. 18014 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:86,899,834
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 622275 as yet unmatched pairs. 15820 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:92,633,641
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 620487 as yet unmatched pairs. 14023 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:96,983,394
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 618205 as yet unmatched pairs. 11727 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr10:100,498,097
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 616354 as yet unmatched pairs. 9861 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr10:102,488,167
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 614641 as yet unmatched pairs. 8118 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr10:113,040,029
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 613173 as yet unmatched pairs. 6632 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:119,820,871
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 610403 as yet unmatched pairs. 3847 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr10:128,103,682
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 608941 as yet unmatched pairs. 2371 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr11:237,083
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 606991 as yet unmatched pairs. 59400 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:884,154
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 604755 as yet unmatched pairs. 57154 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:3,706,479
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 601954 as yet unmatched pairs. 54347 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:9,178,183
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 599618 as yet unmatched pairs. 52004 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:13,419,731
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 597530 as yet unmatched pairs. 49894 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:28,023,745
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 595581 as yet unmatched pairs. 47935 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:35,139,218
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 595023 as yet unmatched pairs. 47355 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:45,902,706
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 591751 as yet unmatched pairs. 44066 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:47,413,584
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 589911 as yet unmatched pairs. 42220 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:57,334,597
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 588140 as yet unmatched pairs. 40435 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:61,300,056
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 585769 as yet unmatched pairs. 38057 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:62,356,986
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 583555 as yet unmatched pairs. 35793 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,634,910
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 581963 as yet unmatched pairs. 34192 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:64,195,771
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 579798 as yet unmatched pairs. 32017 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:64,926,849
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 577106 as yet unmatched pairs. 29312 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:65,505,263
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 575150 as yet unmatched pairs. 27320 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,411
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 572900 as yet unmatched pairs. 25057 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:66,639,909
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 570960 as yet unmatched pairs. 23105 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:68,030,715
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 568285 as yet unmatched pairs. 20416 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:70,435,477
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 565689 as yet unmatched pairs. 17808 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr11:74,093,973
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 563428 as yet unmatched pairs. 15530 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:85,976,665
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 561852 as yet unmatched pairs. 13946 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:96,279,042
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 559759 as yet unmatched pairs. 11837 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr11:110,435,851
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 557739 as yet unmatched pairs. 9797 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr11:118,136,995
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 555927 as yet unmatched pairs. 7970 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr11:118,902,881
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 553903 as yet unmatched pairs. 5934 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr11:121,059,993
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 551875 as yet unmatched pairs. 3885 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:126,409,297
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 550370 as yet unmatched pairs. 2365 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:880,740
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 547957 as yet unmatched pairs. 48447 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:6,523,292
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 546356 as yet unmatched pairs. 46829 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:6,915,841
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 544581 as yet unmatched pairs. 45046 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:11,839,258
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 542349 as yet unmatched pairs. 42804 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:24,817,920
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 540026 as yet unmatched pairs. 40471 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:32,328,186
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 538227 as yet unmatched pairs. 38652 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:47,235,548
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 536052 as yet unmatched pairs. 36471 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,125
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 537648 as yet unmatched pairs. 38063 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,795,638
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 532246 as yet unmatched pairs. 32656 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr12:53,289,430
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 530404 as yet unmatched pairs. 30799 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:55,685,275
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 528959 as yet unmatched pairs. 29348 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,244,389
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 526775 as yet unmatched pairs. 27150 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:57,095,269
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 524740 as yet unmatched pairs. 25109 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:59,681,930
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 522311 as yet unmatched pairs. 22677 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:70,532,095
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 520514 as yet unmatched pairs. 20871 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:79,845,342
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 518767 as yet unmatched pairs. 19117 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:98,600,017
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 517225 as yet unmatched pairs. 17570 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr12:105,142,452
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 514870 as yet unmatched pairs. 15209 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:110,545,973
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 512829 as yet unmatched pairs. 13156 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr12:114,674,191
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 511010 as yet unmatched pairs. 11330 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr12:120,215,383
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 508934 as yet unmatched pairs. 9233 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:122,505,567
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 506445 as yet unmatched pairs. 6732 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:124,337,118
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 504962 as yet unmatched pairs. 5236 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:131,912,060
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 502382 as yet unmatched pairs. 2641 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:133,191,559
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 499952 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr13:24,435,131
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 498314 as yet unmatched pairs. 13726 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr13:35,822,733
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 496247 as yet unmatched pairs. 11638 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr13:46,045,056
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 494375 as yet unmatched pairs. 9756 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr13:59,992,474
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 492512 as yet unmatched pairs. 7876 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr13:85,794,068
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 490430 as yet unmatched pairs. 5779 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr13:102,839,666
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 488525 as yet unmatched pairs. 3861 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr13:112,522,339
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 485929 as yet unmatched pairs. 1261 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:21,213,044
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 484589 as yet unmatched pairs. 28758 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr14:23,560,366
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 482126 as yet unmatched pairs. 26284 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 3s. Last read position: chr14:31,169,458
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 480077 as yet unmatched pairs. 24224 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr14:49,585,971
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 478673 as yet unmatched pairs. 22798 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr14:49,853,709
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 476900 as yet unmatched pairs. 20999 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr14:51,720,137
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 475778 as yet unmatched pairs. 19846 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr14:58,645,812
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 473851 as yet unmatched pairs. 17908 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr14:64,126,728
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 472353 as yet unmatched pairs. 16395 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr14:68,925,572
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 470840 as yet unmatched pairs. 14878 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr14:74,781,836
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 468358 as yet unmatched pairs. 12390 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr14:88,638,811
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 465970 as yet unmatched pairs. 9993 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr14:97,048,750
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 463945 as yet unmatched pairs. 7951 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:102,041,631
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 462350 as yet unmatched pairs. 6306 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:103,522,325
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 461102 as yet unmatched pairs. 5049 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,161
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 458080 as yet unmatched pairs. 2011 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr15:22,939,214
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 455777 as yet unmatched pairs. 38500 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr15:32,445,466
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 453616 as yet unmatched pairs. 36325 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr15:39,589,881
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 453651 as yet unmatched pairs. 36353 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr15:41,371,552
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 450274 as yet unmatched pairs. 32971 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr15:42,727,699
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 447820 as yet unmatched pairs. 30508 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr15:43,793,914
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 446040 as yet unmatched pairs. 28722 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr15:48,878,490
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 444924 as yet unmatched pairs. 27596 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr15:55,183,355
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 442575 as yet unmatched pairs. 25232 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr15:57,273,028
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 442616 as yet unmatched pairs. 25264 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr15:60,382,406
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 439371 as yet unmatched pairs. 22007 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr15:64,500,028
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 436589 as yet unmatched pairs. 19214 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr15:67,830,214
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 434256 as yet unmatched pairs. 16878 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr15:72,206,821
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 433616 as yet unmatched pairs. 16227 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr15:73,998,061
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 431145 as yet unmatched pairs. 13751 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr15:75,392,738
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 428087 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr15:78,891,501
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 426329 as yet unmatched pairs. 8924 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr15:84,670,725
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 425180 as yet unmatched pairs. 7768 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr15:89,582,703
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 422627 as yet unmatched pairs. 5200 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr15:90,910,674
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 420666 as yet unmatched pairs. 3231 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr15:99,132,919
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 419246 as yet unmatched pairs. 1791 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr16:656,345
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 416054 as yet unmatched pairs. 55788 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:1,788,740
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 413218 as yet unmatched pairs. 52945 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:2,111,371
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 410880 as yet unmatched pairs. 50596 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr16:2,764,004
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 408769 as yet unmatched pairs. 48473 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr16:3,672,750
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 406012 as yet unmatched pairs. 45710 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr16:11,676,160
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 404058 as yet unmatched pairs. 43745 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:14,948,940
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 402462 as yet unmatched pairs. 42146 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:16,322,714
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 401422 as yet unmatched pairs. 41098 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:18,430,873
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 400645 as yet unmatched pairs. 40315 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,231
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 399993 as yet unmatched pairs. 39662 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,809
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 398275 as yet unmatched pairs. 37939 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:28,098,461
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 396966 as yet unmatched pairs. 36620 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,203
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 395596 as yet unmatched pairs. 35242 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,067,452
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 394709 as yet unmatched pairs. 34349 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:30,669,470
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 391675 as yet unmatched pairs. 31311 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:31,186,801
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 396029 as yet unmatched pairs. 35650 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr16:47,365,806
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 388713 as yet unmatched pairs. 28327 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr16:51,140,730
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 387322 as yet unmatched pairs. 26928 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr16:55,483,099
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 385561 as yet unmatched pairs. 25158 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr16:57,382,549
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 381958 as yet unmatched pairs. 21541 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr16:58,546,726
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 379960 as yet unmatched pairs. 19535 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr16:67,154,950
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 377404 as yet unmatched pairs. 16965 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:67,880,757
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 375190 as yet unmatched pairs. 14745 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr16:69,322,209
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 373998 as yet unmatched pairs. 13551 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr16:70,271,874
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 371524 as yet unmatched pairs. 11073 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:71,764,644
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 369356 as yet unmatched pairs. 8900 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr16:75,630,479
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 366933 as yet unmatched pairs. 6469 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr16:85,806,800
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 365333 as yet unmatched pairs. 4860 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr16:89,284,830
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 362928 as yet unmatched pairs. 2444 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 3s. Last read position: chr17:747,823
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 360524 as yet unmatched pairs. 88925 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr17:1,478,723
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 358551 as yet unmatched pairs. 86948 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr17:2,365,242
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 356092 as yet unmatched pairs. 84489 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr17:4,719,350
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 354270 as yet unmatched pairs. 82661 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:5,462,507
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 351862 as yet unmatched pairs. 80251 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:7,403,366
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 349561 as yet unmatched pairs. 77943 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:7,676,028
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 348279 as yet unmatched pairs. 76657 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:8,513,586
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 345693 as yet unmatched pairs. 74067 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr17:15,636,086
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 343805 as yet unmatched pairs. 72170 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 2s. Last read position: chr17:17,172,755
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 342093 as yet unmatched pairs. 70452 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr17:18,235,162
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 339225 as yet unmatched pairs. 67576 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr17:19,785,967
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 336897 as yet unmatched pairs. 65246 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr17:28,381,555
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 334923 as yet unmatched pairs. 63270 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr17:28,749,029
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 333924 as yet unmatched pairs. 62268 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr17:30,274,103
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 330958 as yet unmatched pairs. 59294 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr17:32,477,545
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 329474 as yet unmatched pairs. 57806 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 2s. Last read position: chr17:36,254,193
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 328114 as yet unmatched pairs. 56444 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:38,277,712
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 325595 as yet unmatched pairs. 53918 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,399
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 323823 as yet unmatched pairs. 52141 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr17:40,404,831
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 323642 as yet unmatched pairs. 51955 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:42,202,340
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 319593 as yet unmatched pairs. 47897 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:42,991,167
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 317430 as yet unmatched pairs. 45728 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr17:44,321,709
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 316444 as yet unmatched pairs. 44732 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr17:44,932,181
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 313104 as yet unmatched pairs. 41389 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 2s. Last read position: chr17:46,751,594
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 311329 as yet unmatched pairs. 39612 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 2s. Last read position: chr17:48,071,440
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 309926 as yet unmatched pairs. 38200 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,076,985
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 310354 as yet unmatched pairs. 38621 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,665,234
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 307858 as yet unmatched pairs. 36119 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:57,257,530
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 303154 as yet unmatched pairs. 31407 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr17:59,644,295
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 307778 as yet unmatched pairs. 36020 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chr17:59,681,359
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 305727 as yet unmatched pairs. 33963 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 164s. Last read position: chr17:60,268,342
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 297086 as yet unmatched pairs. 25319 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr17:63,815,664
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 295221 as yet unmatched pairs. 23451 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr17:67,912,686
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 293173 as yet unmatched pairs. 21400 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr17:72,574,366
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 291100 as yet unmatched pairs. 19326 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 2s. Last read position: chr17:75,667,393
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 289044 as yet unmatched pairs. 17261 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr17:75,878,116
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 287665 as yet unmatched pairs. 15875 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:77,307,185
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 284557 as yet unmatched pairs. 12763 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 2s. Last read position: chr17:79,781,751
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 282423 as yet unmatched pairs. 10624 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr17:81,510,631
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 281931 as yet unmatched pairs. 10125 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr17:81,823,478
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 278536 as yet unmatched pairs. 6727 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr17:82,049,685
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 275462 as yet unmatched pairs. 3651 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr17:82,443,505
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 274068 as yet unmatched pairs. 2248 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr18:2,927,731
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 271044 as yet unmatched pairs. 9001 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr18:9,396,302
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 270230 as yet unmatched pairs. 8185 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr18:23,557,123
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 266722 as yet unmatched pairs. 4672 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr18:50,276,905
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 264911 as yet unmatched pairs. 2853 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr18:63,327,012
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 262892 as yet unmatched pairs. 827 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr19:630,131
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 260911 as yet unmatched pairs. 114307 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr19:1,091,791
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 259459 as yet unmatched pairs. 112853 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,086
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 262825 as yet unmatched pairs. 116217 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:1,987,234
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 253626 as yet unmatched pairs. 107013 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,434,874
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 251311 as yet unmatched pairs. 104688 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:3,544,757
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 248469 as yet unmatched pairs. 101841 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:4,433,407
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 245938 as yet unmatched pairs. 99306 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:5,137,976
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 243293 as yet unmatched pairs. 96659 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:5,824,171
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 241696 as yet unmatched pairs. 95062 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr19:6,417,992
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 239008 as yet unmatched pairs. 92371 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr19:7,550,621
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 236915 as yet unmatched pairs. 90270 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chr19:8,951,261
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 233238 as yet unmatched pairs. 86589 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr19:10,362,395
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 231464 as yet unmatched pairs. 84810 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr19:11,193,262
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 229075 as yet unmatched pairs. 82420 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr19:12,731,378
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 227873 as yet unmatched pairs. 81217 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr19:13,135,506
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 224991 as yet unmatched pairs. 78331 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr19:14,136,415
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 222484 as yet unmatched pairs. 75815 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr19:14,566,768
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 220845 as yet unmatched pairs. 74172 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr19:15,273,004
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 219218 as yet unmatched pairs. 72543 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 2s. Last read position: chr19:17,152,656
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 216130 as yet unmatched pairs. 69451 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr19:17,943,540
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 213682 as yet unmatched pairs. 67000 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr19:18,768,485
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 210815 as yet unmatched pairs. 64126 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr19:19,535,509
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 208519 as yet unmatched pairs. 61830 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr19:32,692,495
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 206757 as yet unmatched pairs. 60060 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr19:34,430,582
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 205903 as yet unmatched pairs. 59201 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,821
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 201956 as yet unmatched pairs. 55246 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr19:36,142,917
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 202580 as yet unmatched pairs. 55865 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr19:38,647,749
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 199938 as yet unmatched pairs. 53221 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr19:38,838,580
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 195166 as yet unmatched pairs. 48442 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 2s. Last read position: chr19:39,435,673
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 192410 as yet unmatched pairs. 45684 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr19:40,255,233
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 192079 as yet unmatched pairs. 45353 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 2s. Last read position: chr19:41,238,057
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 188720 as yet unmatched pairs. 41994 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:41,956,825
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 187269 as yet unmatched pairs. 40541 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 3s. Last read position: chr19:42,287,190
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 184942 as yet unmatched pairs. 38213 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr19:42,294,841
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 183936 as yet unmatched pairs. 37207 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr19:43,648,874
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 178961 as yet unmatched pairs. 32217 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr19:44,974,485
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 176948 as yet unmatched pairs. 30202 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:45,428,701
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 174062 as yet unmatched pairs. 27308 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chr19:45,884,236
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 172126 as yet unmatched pairs. 25371 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 3s. Last read position: chr19:46,787,403
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 172169 as yet unmatched pairs. 25413 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr19:48,149,797
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 167107 as yet unmatched pairs. 20348 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr19:48,966,580
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 164956 as yet unmatched pairs. 18192 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr19:49,595,696
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 162608 as yet unmatched pairs. 15837 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chr19:49,805,688
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 160833 as yet unmatched pairs. 14058 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chr19:50,482,534
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 159273 as yet unmatched pairs. 12494 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr19:53,352,106
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 155538 as yet unmatched pairs. 8751 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 2s. Last read position: chr19:54,458,336
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 154045 as yet unmatched pairs. 7255 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 2s. Last read position: chr19:55,613,600
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 150883 as yet unmatched pairs. 4090 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr19:57,641,492
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 148508 as yet unmatched pairs. 1713 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr20:462,358
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 146515 as yet unmatched pairs. 34080 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr20:3,545,757
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 144237 as yet unmatched pairs. 31801 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr20:5,561,506
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 142041 as yet unmatched pairs. 29604 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr20:18,398,612
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 139634 as yet unmatched pairs. 27194 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr20:25,754,467
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 137574 as yet unmatched pairs. 25130 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr20:33,670,691
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 136004 as yet unmatched pairs. 23554 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chr20:35,504,895
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 133416 as yet unmatched pairs. 20965 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr20:36,816,220
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 131427 as yet unmatched pairs. 18974 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr20:43,463,411
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 129156 as yet unmatched pairs. 16700 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: chr20:45,953,696
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 127297 as yet unmatched pairs. 14838 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr20:50,191,864
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 125350 as yet unmatched pairs. 12884 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr20:57,407,546
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 123834 as yet unmatched pairs. 11367 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr20:58,991,028
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 120611 as yet unmatched pairs. 8143 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 2s. Last read position: chr20:62,315,948
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 118856 as yet unmatched pairs. 6383 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr20:62,813,492
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 116414 as yet unmatched pairs. 3935 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr20:63,742,734
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 114091 as yet unmatched pairs. 1611 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr21:8,213,177
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 112475 as yet unmatched pairs. 17992 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,919
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 110473 as yet unmatched pairs. 15979 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,926
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 109041 as yet unmatched pairs. 14547 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,033
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 109677 as yet unmatched pairs. 15182 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,437,732
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 108049 as yet unmatched pairs. 13542 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,138
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 106239 as yet unmatched pairs. 11732 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: chr21:25,982,439
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 105617 as yet unmatched pairs. 11104 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr21:33,575,662
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 103226 as yet unmatched pairs. 8705 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 2s. Last read position: chr21:39,390,827
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 101128 as yet unmatched pairs. 6607 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 2s. Last read position: chr21:45,468,591
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 99314 as yet unmatched pairs. 4789 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 2s. Last read position: chr21:46,206,733
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 97696 as yet unmatched pairs. 3170 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 2s. Last read position: chr22:17,818,448
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 94182 as yet unmatched pairs. 26953 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr22:20,582,722
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 92132 as yet unmatched pairs. 24900 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 2s. Last read position: chr22:23,967,002
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 89835 as yet unmatched pairs. 22601 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 2s. Last read position: chr22:29,272,221
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 89127 as yet unmatched pairs. 21886 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 2s. Last read position: chr22:29,636,758
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 86678 as yet unmatched pairs. 19436 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chr22:32,485,062
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 83658 as yet unmatched pairs. 16415 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 1s. Last read position: chr22:36,316,566
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 81855 as yet unmatched pairs. 14611 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr22:37,922,001
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 79089 as yet unmatched pairs. 11840 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr22:39,511,885
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 76513 as yet unmatched pairs. 9263 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,515,481
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 74859 as yet unmatched pairs. 7608 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 1s. Last read position: chr22:43,159,400
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 72821 as yet unmatched pairs. 5568 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 1s. Last read position: chr22:50,201,150
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 70125 as yet unmatched pairs. 2871 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 1s. Last read position: chr22:50,627,189
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 68210 as yet unmatched pairs. 955 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 2s. Last read position: chrX:10,455,053
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 65297 as yet unmatched pairs. 52950 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chrX:17,613,354
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 63319 as yet unmatched pairs. 50972 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 1s. Last read position: chrX:24,076,730
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 61563 as yet unmatched pairs. 49194 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 2s. Last read position: chrX:40,935,687
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 59474 as yet unmatched pairs. 47103 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 1s. Last read position: chrX:46,758,720
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 57876 as yet unmatched pairs. 45505 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 1s. Last read position: chrX:47,915,995
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 55650 as yet unmatched pairs. 43279 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 1s. Last read position: chrX:49,036,731
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 55846 as yet unmatched pairs. 43475 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 1s. Last read position: chrX:53,194,494
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 51972 as yet unmatched pairs. 39601 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 1s. Last read position: chrX:53,591,097
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 49690 as yet unmatched pairs. 37319 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 2s. Last read position: chrX:65,356,993
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 47246 as yet unmatched pairs. 34874 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 1s. Last read position: chrX:71,250,132
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 45404 as yet unmatched pairs. 33030 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 1s. Last read position: chrX:74,592,871
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 43714 as yet unmatched pairs. 31340 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 1s. Last read position: chrX:81,297,229
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 41608 as yet unmatched pairs. 29234 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 1s. Last read position: chrX:108,625,730
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 39786 as yet unmatched pairs. 27412 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chrX:119,469,802
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 38743 as yet unmatched pairs. 26367 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 2s. Last read position: chrX:124,086,675
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 36187 as yet unmatched pairs. 23810 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 2s. Last read position: chrX:134,425,264
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 34065 as yet unmatched pairs. 21688 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chrX:147,936,544
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 32875 as yet unmatched pairs. 20497 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chrX:152,767,420
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 30266 as yet unmatched pairs. 17888 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chrX:153,777,620
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 28733 as yet unmatched pairs. 16355 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 2s. Last read position: chrX:154,018,289
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 27084 as yet unmatched pairs. 14703 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,311
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 25637 as yet unmatched pairs. 13256 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: chrX:154,359,768
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 23089 as yet unmatched pairs. 10708 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,824
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 20795 as yet unmatched pairs. 8414 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 2s. Last read position: chrX:154,402,746
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 16942 as yet unmatched pairs. 4561 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 2s. Last read position: chrX:154,532,262
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 16259 as yet unmatched pairs. 3878 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 2s. Last read position: chrY:2,842,190
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 13069 as yet unmatched pairs. 1144 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chrM:13,466
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 11207 as yet unmatched pairs. 536 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,754
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 10264 as yet unmatched pairs. 3648 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,588
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 6816 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,551
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 6650 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,472
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 6409 as yet unmatched pairs. 6386 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,178
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 3484 as yet unmatched pairs. 3461 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,652
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 14729 as yet unmatched pairs. 14706 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,285
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 73 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 633371523 records. 0 pairs never matched.
INFO 2026-06-08 08:55:38 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137008; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:55:38 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:55:43 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:55:43 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:58 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 08:55:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,017
INFO 2026-06-08 08:55:58 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:55:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,328
INFO 2026-06-08 08:56:12 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 08:56:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,284
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,785
INFO 2026-06-08 08:56:35 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 08:56:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,456
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1313
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,987
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,336
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1979
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,603
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1572
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,734
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,714
INFO 2026-06-08 08:57:28 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:57:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:59:06 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:59:19 MarkDuplicates After generateDuplicateIndexes freeMemory: 24617120688; totalMemory: 40567308288; maxMemory: 63585648640
INFO 2026-06-08 08:59:19 MarkDuplicates Marking 245066531 records as duplicates.
INFO 2026-06-08 08:59:19 MarkDuplicates Found 18024509 optical duplicate clusters.
INFO 2026-06-08 08:59:19 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:59:44 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:25s. Time for last 10,000,000: 25s. Last read position: chr1:19,485,449
INFO 2026-06-08 09:00:11 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 26s. Last read position: chr1:40,092,056
INFO 2026-06-08 09:00:39 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 27s. Last read position: chr1:98,661,711
INFO 2026-06-08 09:01:04 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 24s. Last read position: chr1:119,963,628
INFO 2026-06-08 09:01:26 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 22s. Last read position: chr1:154,170,424
INFO 2026-06-08 09:01:52 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 25s. Last read position: chr1:178,458,308
INFO 2026-06-08 09:02:20 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 28s. Last read position: chr1:229,326,951
INFO 2026-06-08 09:02:47 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 26s. Last read position: chr2:32,392,075
INFO 2026-06-08 09:03:13 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 25s. Last read position: chr2:68,526,152
INFO 2026-06-08 09:03:39 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 25s. Last read position: chr2:113,939,958
INFO 2026-06-08 09:04:02 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 23s. Last read position: chr2:202,210,735
INFO 2026-06-08 09:04:28 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 25s. Last read position: chr3:9,429,567
INFO 2026-06-08 09:04:53 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 24s. Last read position: chr3:49,368,444
INFO 2026-06-08 09:05:19 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 26s. Last read position: chr3:121,718,447
INFO 2026-06-08 09:05:46 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 27s. Last read position: chr3:188,406,125
INFO 2026-06-08 09:06:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 28s. Last read position: chr4:52,023,794
INFO 2026-06-08 09:06:41 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:07:22s. Time for last 10,000,000: 26s. Last read position: chr4:140,622,602
INFO 2026-06-08 09:07:08 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 26s. Last read position: chr5:38,481,907
INFO 2026-06-08 09:07:35 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 27s. Last read position: chr5:112,887,052
INFO 2026-06-08 09:08:02 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 26s. Last read position: chr5:151,673,177
INFO 2026-06-08 09:08:30 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 28s. Last read position: chr6:11,193,638
INFO 2026-06-08 09:08:56 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:09:37s. Time for last 10,000,000: 26s. Last read position: chr6:34,858,861
INFO 2026-06-08 09:09:24 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 27s. Last read position: chr6:98,834,914
INFO 2026-06-08 09:09:52 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 28s. Last read position: chr6:158,785,534
INFO 2026-06-08 09:10:19 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 27s. Last read position: chr7:26,184,825
INFO 2026-06-08 09:10:48 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:11:29s. Time for last 10,000,000: 28s. Last read position: chr7:75,790,137
INFO 2026-06-08 09:11:16 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 28s. Last read position: chr7:105,146,596
INFO 2026-06-08 09:11:45 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 28s. Last read position: chr7:151,595,382
INFO 2026-06-08 09:12:08 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:12:48s. Time for last 10,000,000: 22s. Last read position: chr8:88,041,617
INFO 2026-06-08 09:12:34 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 26s. Last read position: chr9:15,192,591
INFO 2026-06-08 09:13:03 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 28s. Last read position: chr9:113,583,758
INFO 2026-06-08 09:13:30 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 27s. Last read position: chr9:136,837,358
INFO 2026-06-08 09:14:00 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 29s. Last read position: chr10:86,899,834
INFO 2026-06-08 09:14:21 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 21s. Last read position: chr11:3,706,479
INFO 2026-06-08 09:14:44 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 22s. Last read position: chr11:62,634,910
INFO 2026-06-08 09:15:10 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:15:51s. Time for last 10,000,000: 26s. Last read position: chr11:96,279,042
INFO 2026-06-08 09:15:38 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 27s. Last read position: chr12:24,817,920
INFO 2026-06-08 09:16:07 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:16:47s. Time for last 10,000,000: 28s. Last read position: chr12:70,532,095
INFO 2026-06-08 09:16:34 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:17:15s. Time for last 10,000,000: 27s. Last read position: chr12:133,191,559
INFO 2026-06-08 09:17:02 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:17:43s. Time for last 10,000,000: 27s. Last read position: chr14:31,169,458
INFO 2026-06-08 09:17:29 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:18:09s. Time for last 10,000,000: 26s. Last read position: chr14:102,041,631
INFO 2026-06-08 09:17:56 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:18:37s. Time for last 10,000,000: 27s. Last read position: chr15:55,183,355
INFO 2026-06-08 09:18:24 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:19:05s. Time for last 10,000,000: 28s. Last read position: chr15:89,582,703
INFO 2026-06-08 09:18:52 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:19:32s. Time for last 10,000,000: 27s. Last read position: chr16:16,322,714
INFO 2026-06-08 09:19:19 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:20:00s. Time for last 10,000,000: 27s. Last read position: chr16:51,140,730
INFO 2026-06-08 09:19:46 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:20:27s. Time for last 10,000,000: 27s. Last read position: chr16:85,806,800
INFO 2026-06-08 09:20:11 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:20:52s. Time for last 10,000,000: 24s. Last read position: chr17:15,636,086
INFO 2026-06-08 09:20:39 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:21:19s. Time for last 10,000,000: 27s. Last read position: chr17:39,708,399
INFO 2026-06-08 09:21:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:21:47s. Time for last 10,000,000: 27s. Last read position: chr17:57,257,530
INFO 2026-06-08 09:21:34 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:22:14s. Time for last 10,000,000: 27s. Last read position: chr17:79,781,751
INFO 2026-06-08 09:22:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:22:41s. Time for last 10,000,000: 26s. Last read position: chr19:630,131
INFO 2026-06-08 09:22:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:23:07s. Time for last 10,000,000: 26s. Last read position: chr19:7,550,621
INFO 2026-06-08 09:22:51 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:23:32s. Time for last 10,000,000: 24s. Last read position: chr19:17,943,540
INFO 2026-06-08 09:23:17 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:23:57s. Time for last 10,000,000: 25s. Last read position: chr19:40,255,233
INFO 2026-06-08 09:23:44 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:24:25s. Time for last 10,000,000: 27s. Last read position: chr19:48,149,797
INFO 2026-06-08 09:24:10 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:24:51s. Time for last 10,000,000: 26s. Last read position: chr20:3,545,757
INFO 2026-06-08 09:24:38 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:25:19s. Time for last 10,000,000: 27s. Last read position: chr20:57,407,546
INFO 2026-06-08 09:25:03 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:25:44s. Time for last 10,000,000: 25s. Last read position: chr21:8,444,138
INFO 2026-06-08 09:25:31 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:26:12s. Time for last 10,000,000: 27s. Last read position: chr22:29,636,758
INFO 2026-06-08 09:25:59 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:26:39s. Time for last 10,000,000: 27s. Last read position: chrX:17,613,354
INFO 2026-06-08 09:26:24 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:27:04s. Time for last 10,000,000: 25s. Last read position: chrX:74,592,871
INFO 2026-06-08 09:26:49 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:27:29s. Time for last 10,000,000: 24s. Last read position: chrX:154,352,311
INFO 2026-06-08 09:27:13 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:27:54s. Time for last 10,000,000: 24s. Last read position: KI270733.1:129,472
INFO 2026-06-08 09:27:31 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:27:31 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:27:31 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:27:31 MarkDuplicates Before output close freeMemory: 12686680064; totalMemory: 40567308288; maxMemory: 63585648640
INFO 2026-06-08 09:27:31 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:27:32 MarkDuplicates After output close freeMemory: 203855096; totalMemory: 234881024; maxMemory: 63585648640
[Mon Jun 08 09:27:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 57.95 minutes.
Runtime.totalMemory()=234881024
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory