AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 187
Pass (FILTER=PASS): 27 (14.4%)
Fail (FILTER=FAIL): 160 (85.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 7
All 7 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 29
confidence_below_min(medium<high): 24
confidence_below_min(low<high): 17
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 3
Breakdown by confidence:
high: 27 pass, 2 fail (total: 29)
low: 0 pass, 96 fail (total: 96)
medium: 0 pass, 62 fail (total: 62)
Arriba filter: 187 rows -> 27 PASS; wrote KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.arriba.fusions.filtered.tsv and KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.arriba.fusions.filter_summary.txt