Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e441b35c6fb1f2cef2414d58071a1f/SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/ccdfbf0344b0219f277aa5dc5a00c0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/ccdfbf0344b0219f277aa5dc5a00c0/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory