#!/bin/bash -euo pipefail
cat OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L005_R1_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L006_R1_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L007_R1_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L008_R1_001.fastq.gz > OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_R1.fastq.gz
cat OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L005_R2_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L006_R2_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L007_R2_001.fastq.gz OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_S93_L008_R2_001.fastq.gz > OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS