.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/6b2e20847275fdb08eef9711fba7dd/.command.err
Size: 25.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1)
Attempt
Content

-ctat genome lib [/tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.M6TjV5nGbJ/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary
-sample contains 14655979 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir  -J /tmp/nxf.M6TjV5nGbJ/ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.M6TjV5nGbJ/ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=66666.67/min 
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[390000], rate=87313.43/min -building interval tree based on /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=75000.00/min 
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[400000], rate=67796.61/min -building interval tree based on /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[390000], rate=64462.81/min -building interval tree based on /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[390000], rate=58942.07/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4500000.00 reads per min processed...  
 4666666.67 reads per min processed...  
 4363636.36 reads per min processed...  
 4500000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4125000.00 reads per min processed...  
 4235294.12 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.M6TjV5nGbJ/ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -30149.304464
EM: Round [1] log likelihood: -30113.914014
EM: Round [2] log likelihood: -30098.031392
EM: Round [3] log likelihood: -30089.683435
EM: Round [4] log likelihood: -30085.088522
EM: Round [5] log likelihood: -30082.511915
EM: Round [6] log likelihood: -30081.033977
EM: Round [7] log likelihood: -30080.158630
EM: Round [8] log likelihood: -30079.620327
EM: Round [9] log likelihood: -30079.276340
EM: Round [10] log likelihood: -30079.048491
EM: Round [11] log likelihood: -30078.892705
EM: Round [12] log likelihood: -30078.783275
EM: Round [13] log likelihood: -30078.704658
EM: Round [14] log likelihood: -30078.647116
EM: Round [15] log likelihood: -30078.604341
EM: Round [16] log likelihood: -30078.572121
EM: Round [17] log likelihood: -30078.547571
EM: Round [18] log likelihood: -30078.528669
EM: Round [19] log likelihood: -30078.513975
EM: Round [20] log likelihood: -30078.502441
EM: Round [21] log likelihood: -30078.493304
EM: Round [22] log likelihood: -30078.485996
EM: Round [23] log likelihood: -30078.480093
EM: Round [24] log likelihood: -30078.475276
EM: Round [25] log likelihood: -30078.471303
EM: Round [26] log likelihood: -30078.467991
EM: Round [27] log likelihood: -30078.465199
EM: Round [28] log likelihood: -30078.462818
EM: Round [29] log likelihood: -30078.460764
EM: Round [30] log likelihood: -30078.458973
EM: Round [31] log likelihood: -30078.457394
EM: Round [32] log likelihood: -30078.455987
EM: Round [33] log likelihood: -30078.454722
EM: Round [34] log likelihood: -30078.453573
EM: Round [35] log likelihood: -30078.452521
EM: Round [36] log likelihood: -30078.451551
EM: Round [37] log likelihood: -30078.450650
EM: Round [38] log likelihood: -30078.449808
EM: Round [39] log likelihood: -30078.449018
EM: Round [40] log likelihood: -30078.448272
EM: Round [41] log likelihood: -30078.447566
EM: Round [42] log likelihood: -30078.446895
EM: Round [43] log likelihood: -30078.446256
EM: Round [44] log likelihood: -30078.445645
EM: Round [45] log likelihood: -30078.445061
EM: Round [46] log likelihood: -30078.444500
EM: Round [47] log likelihood: -30078.443962
EM: Round [48] log likelihood: -30078.443445
EM: Round [49] log likelihood: -30078.442947
EM: Round [50] log likelihood: -30078.442467
EM: Round [51] log likelihood: -30078.442005
EM: Round [52] log likelihood: -30078.441559
EM: Round [53] log likelihood: -30078.441128
EM: Round [54] log likelihood: -30078.440713
EM: Round [55] log likelihood: -30078.440312
EM: Round [56] log likelihood: -30078.439925
EM: Round [57] log likelihood: -30078.439551
EM: Round [58] log likelihood: -30078.439189
EM: Round [59] log likelihood: -30078.438840
EM: Round [60] log likelihood: -30078.438503
EM: Round [61] log likelihood: -30078.438177
EM: Round [62] log likelihood: -30078.437862
EM: Round [63] log likelihood: -30078.437557
EM: Round [64] log likelihood: -30078.437263
EM: Round [65] log likelihood: -30078.436979
EM: Round [66] log likelihood: -30078.436704
EM: Round [67] log likelihood: -30078.436439
EM: Round [68] log likelihood: -30078.436183
EM: Round [69] log likelihood: -30078.435935
EM: Round [70] log likelihood: -30078.435696
EM: Round [71] log likelihood: -30078.435465
EM: Round [72] log likelihood: -30078.435241
EM: Round [73] log likelihood: -30078.435026
EM: Round [74] log likelihood: -30078.434818
EM: Round [75] log likelihood: -30078.434617
EM: Round [76] log likelihood: -30078.434422
EM: Round [77] log likelihood: -30078.434235
EM: Round [78] log likelihood: -30078.434054
EM: Round [79] log likelihood: -30078.433879
EM: Round [80] log likelihood: -30078.433711
EM: Round [81] log likelihood: -30078.433548
EM: Round [82] log likelihood: -30078.433391
EM: Round [83] log likelihood: -30078.433239
EM: Round [84] log likelihood: -30078.433093
EM: Round [85] log likelihood: -30078.432952
EM: Round [86] log likelihood: -30078.432816
EM: Round [87] log likelihood: -30078.432684
EM: Round [88] log likelihood: -30078.432558
EM: Round [89] log likelihood: -30078.432435
EM: Round [90] log likelihood: -30078.432317
EM: Round [91] log likelihood: -30078.432204
EM: Round [92] log likelihood: -30078.432094
EM: Round [93] log likelihood: -30078.431988
EM: Round [94] log likelihood: -30078.431886
EM: Round [95] log likelihood: -30078.431787
EM: Stopping iterations at round 95 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -30064.023186
EM: Round [1] log likelihood: -30033.294368
EM: Round [2] log likelihood: -30020.058687
EM: Round [3] log likelihood: -30013.312791
EM: Round [4] log likelihood: -30009.690094
EM: Round [5] log likelihood: -30007.694195
EM: Round [6] log likelihood: -30006.561279
EM: Round [7] log likelihood: -30005.893234
EM: Round [8] log likelihood: -30005.482416
EM: Round [9] log likelihood: -30005.219176
EM: Round [10] log likelihood: -30005.044089
EM: Round [11] log likelihood: -30004.923830
EM: Round [12] log likelihood: -30004.838983
EM: Round [13] log likelihood: -30004.777789
EM: Round [14] log likelihood: -30004.732851
EM: Round [15] log likelihood: -30004.699358
EM: Round [16] log likelihood: -30004.674079
EM: Round [17] log likelihood: -30004.654789
EM: Round [18] log likelihood: -30004.639923
EM: Round [19] log likelihood: -30004.628357
EM: Round [20] log likelihood: -30004.619275
EM: Round [21] log likelihood: -30004.612076
EM: Round [22] log likelihood: -30004.606314
EM: Round [23] log likelihood: -30004.601655
EM: Round [24] log likelihood: -30004.597846
EM: Round [25] log likelihood: -30004.594697
EM: Round [26] log likelihood: -30004.592062
EM: Round [27] log likelihood: -30004.589830
EM: Round [28] log likelihood: -30004.587915
EM: Round [29] log likelihood: -30004.586252
EM: Round [30] log likelihood: -30004.584788
EM: Round [31] log likelihood: -30004.583486
EM: Round [32] log likelihood: -30004.582314
EM: Round [33] log likelihood: -30004.581247
EM: Round [34] log likelihood: -30004.580268
EM: Round [35] log likelihood: -30004.579361
EM: Round [36] log likelihood: -30004.578515
EM: Round [37] log likelihood: -30004.577721
EM: Round [38] log likelihood: -30004.576971
EM: Round [39] log likelihood: -30004.576260
EM: Round [40] log likelihood: -30004.575582
EM: Round [41] log likelihood: -30004.574935
EM: Round [42] log likelihood: -30004.574315
EM: Round [43] log likelihood: -30004.573719
EM: Round [44] log likelihood: -30004.573146
EM: Round [45] log likelihood: -30004.572595
EM: Round [46] log likelihood: -30004.572062
EM: Round [47] log likelihood: -30004.571549
EM: Round [48] log likelihood: -30004.571052
EM: Round [49] log likelihood: -30004.570573
EM: Round [50] log likelihood: -30004.570109
EM: Round [51] log likelihood: -30004.569660
EM: Round [52] log likelihood: -30004.569226
EM: Round [53] log likelihood: -30004.568806
EM: Round [54] log likelihood: -30004.568399
EM: Round [55] log likelihood: -30004.568006
EM: Round [56] log likelihood: -30004.567625
EM: Round [57] log likelihood: -30004.567257
EM: Round [58] log likelihood: -30004.566900
EM: Round [59] log likelihood: -30004.566555
EM: Round [60] log likelihood: -30004.566221
EM: Round [61] log likelihood: -30004.565898
EM: Round [62] log likelihood: -30004.565586
EM: Round [63] log likelihood: -30004.565284
EM: Round [64] log likelihood: -30004.564991
EM: Round [65] log likelihood: -30004.564709
EM: Round [66] log likelihood: -30004.564435
EM: Round [67] log likelihood: -30004.564171
EM: Round [68] log likelihood: -30004.563915
EM: Round [69] log likelihood: -30004.563669
EM: Round [70] log likelihood: -30004.563430
EM: Round [71] log likelihood: -30004.563199
EM: Round [72] log likelihood: -30004.562976
EM: Round [73] log likelihood: -30004.562761
EM: Round [74] log likelihood: -30004.562553
EM: Round [75] log likelihood: -30004.562352
EM: Round [76] log likelihood: -30004.562158
EM: Round [77] log likelihood: -30004.561971
EM: Round [78] log likelihood: -30004.561790
EM: Round [79] log likelihood: -30004.561615
EM: Round [80] log likelihood: -30004.561446
EM: Round [81] log likelihood: -30004.561284
EM: Round [82] log likelihood: -30004.561126
EM: Round [83] log likelihood: -30004.560975
EM: Round [84] log likelihood: -30004.560828
EM: Round [85] log likelihood: -30004.560687
EM: Round [86] log likelihood: -30004.560551
EM: Round [87] log likelihood: -30004.560419
EM: Round [88] log likelihood: -30004.560292
EM: Round [89] log likelihood: -30004.560170
EM: Round [90] log likelihood: -30004.560051
EM: Round [91] log likelihood: -30004.559937
EM: Round [92] log likelihood: -30004.559827
EM: Round [93] log likelihood: -30004.559721
EM: Round [94] log likelihood: -30004.559619
EM: Round [95] log likelihood: -30004.559521
EM: Stopping iterations at round 95 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 14655979 > /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir > /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir --annotate /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir
-done, see /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 228, filtered: 2769)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.M6TjV5nGbJ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.M6TjV5nGbJ/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227521.2]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000271434.3]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270791.1]
WARNING, no entry stored in dbm for [ENSG00000232648.4]
WARNING, no entry stored in dbm for [ENSG00000253508.1]
WARNING, no entry stored in dbm for [ENSG00000187483.10]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000241625.3]
WARNING, no entry stored in dbm for [ENSG00000241246.3]
WARNING, no entry stored in dbm for [ENSG00000201901.1]
WARNING, no entry stored in dbm for [ENSG00000199683.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000238013.1]
WARNING, no entry stored in dbm for [ENSG00000273149.1]
WARNING, no entry stored in dbm for [ENSG00000249621.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000279128.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000182366.10]
WARNING, no entry stored in dbm for [ENSG00000284237.1]
WARNING, no entry stored in dbm for [ENSG00000245937.8]
WARNING, no entry stored in dbm for [ENSG00000245275.8]
WARNING, no entry stored in dbm for [ENSG00000224520.2]
WARNING, no entry stored in dbm for [ENSG00000257402.2]
WARNING, no entry stored in dbm for [ENSG00000205312.8]
WARNING, no entry stored in dbm for [ENSG00000236467.8]
WARNING, no entry stored in dbm for [ENSG00000260776.6]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000225978.3]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000235240.1]
WARNING, no entry stored in dbm for [ENSG00000230849.2]
WARNING, no entry stored in dbm for [ENSG00000231900.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000250345.2]
WARNING, no entry stored in dbm for [ENSG00000283907.1]
WARNING, no entry stored in dbm for [ENSG00000234028.3]
WARNING, no entry stored in dbm for [ENSG00000216906.2]
WARNING, no entry stored in dbm for [ENSG00000247373.3]
WARNING, no entry stored in dbm for [ENSG00000233221.7]
WARNING, no entry stored in dbm for [ENSG00000175147.13]
WARNING, no entry stored in dbm for [ENSG00000255717.7]
WARNING, no entry stored in dbm for [ENSG00000223704.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000273329.1]
WARNING, no entry stored in dbm for [ENSG00000261670.1]
WARNING, no entry stored in dbm for [ENSG00000277801.1]
WARNING, no entry stored in dbm for [ENSG00000271551.2]
WARNING, no entry stored in dbm for [ENSG00000271329.1]
WARNING, no entry stored in dbm for [ENSG00000226239.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286619.1]
WARNING, no entry stored in dbm for [ENSG00000269001.2]
WARNING, no entry stored in dbm for [ENSG00000288633.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000257607.1]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000234638.1]
WARNING, no entry stored in dbm for [ENSG00000259649.4]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000279726.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.M6TjV5nGbJ/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)