Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/0e870f69b49faa9521ca1f5ddb1f41/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/4364cbf74bc84af89868dfb0442096/LungN_FFPE_L01_RNA_01_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/0e870f69b49faa9521ca1f5ddb1f41/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory