Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b4b43c68761fed865bd7ca5ead7cc1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b4b43c68761fed865bd7ca5ead7cc1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/784ad146e5f68d5755ea7ad498b37f/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/45a8a3c95f859aec40650d46f16881/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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