.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (22Rv1_FFPE_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/480ce4687d4f49e8ff494b915e3152/.command.err
Size: 26.6 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (22Rv1_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt
Content

-ctat genome lib [/tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.1hQh84VkpR/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary
-sample contains 13073429 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir  -J /tmp/nxf.1hQh84VkpR/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Chimeric.out.junction  -O /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.1hQh84VkpR/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Chimeric.out.junction
-building interval tree based on /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=42857.14/min 
[20000], rate=44444.44/min 
[30000], rate=48648.65/min 
[40000], rate=51063.83/min 
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[60000], rate=38709.68/min 
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[100000], rate=40268.46/min 
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[360000], rate=37762.24/min 
[370000], rate=38078.90/min 
[380000], rate=38448.57/min -building interval tree based on /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=22222.22/min 
[20000], rate=18181.82/min 
[30000], rate=17307.69/min 
[40000], rate=18045.11/min 
[50000], rate=19607.84/min 
[60000], rate=21176.47/min 
[70000], rate=23076.92/min 
[80000], rate=24870.47/min 
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[100000], rate=26785.71/min 
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[380000], rate=34029.85/min -building interval tree based on /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=26086.96/min 
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[380000], rate=32524.96/min -building interval tree based on /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[30000], rate=78260.87/min 
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[370000], rate=30662.98/min 
[380000], rate=30978.26/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 3428571.43 reads per min processed...  
 3000000.00 reads per min processed...  
 3000000.00 reads per min processed...  
 3000000.00 reads per min processed...  
 3200000.00 reads per min processed...  
 3176470.59 reads per min processed...  
 3157894.74 reads per min processed...  
 3142857.14 reads per min processed...  
 3272727.27 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.1hQh84VkpR/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -40491.035604
EM: Round [1] log likelihood: -40452.312267
EM: Round [2] log likelihood: -40434.356364
EM: Round [3] log likelihood: -40424.918898
EM: Round [4] log likelihood: -40419.732876
EM: Round [5] log likelihood: -40416.847767
EM: Round [6] log likelihood: -40415.226280
EM: Round [7] log likelihood: -40414.297056
EM: Round [8] log likelihood: -40413.748426
EM: Round [9] log likelihood: -40413.412016
EM: Round [10] log likelihood: -40413.196767
EM: Round [11] log likelihood: -40413.052876
EM: Round [12] log likelihood: -40412.952584
EM: Round [13] log likelihood: -40412.880020
EM: Round [14] log likelihood: -40412.825822
EM: Round [15] log likelihood: -40412.784273
EM: Round [16] log likelihood: -40412.751746
EM: Round [17] log likelihood: -40412.725848
EM: Round [18] log likelihood: -40412.704942
EM: Round [19] log likelihood: -40412.687871
EM: Round [20] log likelihood: -40412.673795
EM: Round [21] log likelihood: -40412.662085
EM: Round [22] log likelihood: -40412.652267
EM: Round [23] log likelihood: -40412.643973
EM: Round [24] log likelihood: -40412.636917
EM: Round [25] log likelihood: -40412.630873
EM: Round [26] log likelihood: -40412.625661
EM: Round [27] log likelihood: -40412.621138
EM: Round [28] log likelihood: -40412.617189
EM: Round [29] log likelihood: -40412.613719
EM: Round [30] log likelihood: -40412.610652
EM: Round [31] log likelihood: -40412.607926
EM: Round [32] log likelihood: -40412.605489
EM: Round [33] log likelihood: -40412.603299
EM: Round [34] log likelihood: -40412.601322
EM: Round [35] log likelihood: -40412.599527
EM: Round [36] log likelihood: -40412.597891
EM: Round [37] log likelihood: -40412.596393
EM: Round [38] log likelihood: -40412.595016
EM: Round [39] log likelihood: -40412.593746
EM: Round [40] log likelihood: -40412.592571
EM: Round [41] log likelihood: -40412.591479
EM: Round [42] log likelihood: -40412.590462
EM: Round [43] log likelihood: -40412.589513
EM: Round [44] log likelihood: -40412.588624
EM: Round [45] log likelihood: -40412.587790
EM: Round [46] log likelihood: -40412.587006
EM: Round [47] log likelihood: -40412.586268
EM: Round [48] log likelihood: -40412.585571
EM: Round [49] log likelihood: -40412.584913
EM: Round [50] log likelihood: -40412.584290
EM: Round [51] log likelihood: -40412.583700
EM: Round [52] log likelihood: -40412.583141
EM: Round [53] log likelihood: -40412.582610
EM: Round [54] log likelihood: -40412.582105
EM: Round [55] log likelihood: -40412.581625
EM: Round [56] log likelihood: -40412.581168
EM: Round [57] log likelihood: -40412.580733
EM: Round [58] log likelihood: -40412.580319
EM: Round [59] log likelihood: -40412.579923
EM: Round [60] log likelihood: -40412.579546
EM: Round [61] log likelihood: -40412.579186
EM: Round [62] log likelihood: -40412.578843
EM: Round [63] log likelihood: -40412.578515
EM: Round [64] log likelihood: -40412.578201
EM: Round [65] log likelihood: -40412.577901
EM: Round [66] log likelihood: -40412.577615
EM: Round [67] log likelihood: -40412.577340
EM: Round [68] log likelihood: -40412.577078
EM: Round [69] log likelihood: -40412.576827
EM: Round [70] log likelihood: -40412.576587
EM: Round [71] log likelihood: -40412.576358
EM: Round [72] log likelihood: -40412.576138
EM: Round [73] log likelihood: -40412.575927
EM: Round [74] log likelihood: -40412.575725
EM: Round [75] log likelihood: -40412.575532
EM: Round [76] log likelihood: -40412.575347
EM: Round [77] log likelihood: -40412.575170
EM: Round [78] log likelihood: -40412.575000
EM: Round [79] log likelihood: -40412.574837
EM: Round [80] log likelihood: -40412.574681
EM: Round [81] log likelihood: -40412.574531
EM: Round [82] log likelihood: -40412.574388
EM: Round [83] log likelihood: -40412.574251
EM: Round [84] log likelihood: -40412.574119
EM: Round [85] log likelihood: -40412.573992
EM: Round [86] log likelihood: -40412.573871
EM: Round [87] log likelihood: -40412.573755
EM: Round [88] log likelihood: -40412.573644
EM: Round [89] log likelihood: -40412.573537
EM: Round [90] log likelihood: -40412.573434
EM: Round [91] log likelihood: -40412.573336
EM: Stopping iterations at round 91 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -40481.606931
EM: Round [1] log likelihood: -40447.086911
EM: Round [2] log likelihood: -40431.295311
EM: Round [3] log likelihood: -40423.046059
EM: Round [4] log likelihood: -40418.548847
EM: Round [5] log likelihood: -40416.072025
EM: Round [6] log likelihood: -40414.695561
EM: Round [7] log likelihood: -40413.916454
EM: Round [8] log likelihood: -40413.462905
EM: Round [9] log likelihood: -40413.189401
EM: Round [10] log likelihood: -40413.017865
EM: Round [11] log likelihood: -40412.905871
EM: Round [12] log likelihood: -40412.829890
EM: Round [13] log likelihood: -40412.776522
EM: Round [14] log likelihood: -40412.737888
EM: Round [15] log likelihood: -40412.709196
EM: Round [16] log likelihood: -40412.687423
EM: Round [17] log likelihood: -40412.670595
EM: Round [18] log likelihood: -40412.657381
EM: Round [19] log likelihood: -40412.646855
EM: Round [20] log likelihood: -40412.638360
EM: Round [21] log likelihood: -40412.631421
EM: Round [22] log likelihood: -40412.625683
EM: Round [23] log likelihood: -40412.620886
EM: Round [24] log likelihood: -40412.616828
EM: Round [25] log likelihood: -40412.613360
EM: Round [26] log likelihood: -40412.610362
EM: Round [27] log likelihood: -40412.607746
EM: Round [28] log likelihood: -40412.605440
EM: Round [29] log likelihood: -40412.603390
EM: Round [30] log likelihood: -40412.601550
EM: Round [31] log likelihood: -40412.599886
EM: Round [32] log likelihood: -40412.598371
EM: Round [33] log likelihood: -40412.596982
EM: Round [34] log likelihood: -40412.595702
EM: Round [35] log likelihood: -40412.594515
EM: Round [36] log likelihood: -40412.593410
EM: Round [37] log likelihood: -40412.592377
EM: Round [38] log likelihood: -40412.591408
EM: Round [39] log likelihood: -40412.590497
EM: Round [40] log likelihood: -40412.589637
EM: Round [41] log likelihood: -40412.588824
EM: Round [42] log likelihood: -40412.588053
EM: Round [43] log likelihood: -40412.587322
EM: Round [44] log likelihood: -40412.586627
EM: Round [45] log likelihood: -40412.585966
EM: Round [46] log likelihood: -40412.585336
EM: Round [47] log likelihood: -40412.584735
EM: Round [48] log likelihood: -40412.584162
EM: Round [49] log likelihood: -40412.583615
EM: Round [50] log likelihood: -40412.583092
EM: Round [51] log likelihood: -40412.582592
EM: Round [52] log likelihood: -40412.582114
EM: Round [53] log likelihood: -40412.581657
EM: Round [54] log likelihood: -40412.581219
EM: Round [55] log likelihood: -40412.580800
EM: Round [56] log likelihood: -40412.580399
EM: Round [57] log likelihood: -40412.580015
EM: Round [58] log likelihood: -40412.579647
EM: Round [59] log likelihood: -40412.579294
EM: Round [60] log likelihood: -40412.578956
EM: Round [61] log likelihood: -40412.578632
EM: Round [62] log likelihood: -40412.578322
EM: Round [63] log likelihood: -40412.578025
EM: Round [64] log likelihood: -40412.577740
EM: Round [65] log likelihood: -40412.577466
EM: Round [66] log likelihood: -40412.577204
EM: Round [67] log likelihood: -40412.576953
EM: Round [68] log likelihood: -40412.576712
EM: Round [69] log likelihood: -40412.576481
EM: Round [70] log likelihood: -40412.576259
EM: Round [71] log likelihood: -40412.576047
EM: Round [72] log likelihood: -40412.575843
EM: Round [73] log likelihood: -40412.575647
EM: Round [74] log likelihood: -40412.575460
EM: Round [75] log likelihood: -40412.575280
EM: Round [76] log likelihood: -40412.575108
EM: Round [77] log likelihood: -40412.574942
EM: Round [78] log likelihood: -40412.574783
EM: Round [79] log likelihood: -40412.574631
EM: Round [80] log likelihood: -40412.574485
EM: Round [81] log likelihood: -40412.574344
EM: Round [82] log likelihood: -40412.574210
EM: Round [83] log likelihood: -40412.574081
EM: Round [84] log likelihood: -40412.573957
EM: Round [85] log likelihood: -40412.573838
EM: Round [86] log likelihood: -40412.573724
EM: Round [87] log likelihood: -40412.573614
EM: Round [88] log likelihood: -40412.573509
EM: Round [89] log likelihood: -40412.573408
EM: Round [90] log likelihood: -40412.573311
EM: Stopping iterations at round 90 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 13073429 > /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir > /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir --annotate /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir
-done, see /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 375, filtered: 3724)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.1hQh84VkpR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.1hQh84VkpR/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000257476.1]
WARNING, no entry stored in dbm for [ENSG00000199883.1]
WARNING, no entry stored in dbm for [ENSG00000202241.1]
WARNING, no entry stored in dbm for [ENSG00000200867.1]
WARNING, no entry stored in dbm for [ENSG00000202241.1]
WARNING, no entry stored in dbm for [ENSG00000200783.1]
WARNING, no entry stored in dbm for [ENSG00000202241.1]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000259020.3]
WARNING, no entry stored in dbm for [ENSG00000093100.13]
WARNING, no entry stored in dbm for [ENSG00000236643.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000186312.10]
WARNING, no entry stored in dbm for [ENSG00000270641.1]
WARNING, no entry stored in dbm for [ENSG00000225914.3]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000224914.4]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000270576.1]
WARNING, no entry stored in dbm for [ENSG00000286786.1]
WARNING, no entry stored in dbm for [ENSG00000286884.1]
WARNING, no entry stored in dbm for [ENSG00000204044.6]
WARNING, no entry stored in dbm for [ENSG00000231304.2]
WARNING, no entry stored in dbm for [ENSG00000237232.9]
WARNING, no entry stored in dbm for [ENSG00000275265.1]
WARNING, no entry stored in dbm for [ENSG00000250379.1]
WARNING, no entry stored in dbm for [ENSG00000213891.3]
WARNING, no entry stored in dbm for [ENSG00000207334.1]
WARNING, no entry stored in dbm for [ENSG00000200048.1]
WARNING, no entry stored in dbm for [ENSG00000243562.3]
WARNING, no entry stored in dbm for [ENSG00000242971.3]
WARNING, no entry stored in dbm for [ENSG00000239437.3]
WARNING, no entry stored in dbm for [ENSG00000266420.2]
WARNING, no entry stored in dbm for [ENSG00000239726.3]
WARNING, no entry stored in dbm for [ENSG00000278771.1]
WARNING, no entry stored in dbm for [ENSG00000244642.3]
WARNING, no entry stored in dbm for [ENSG00000243035.3]
WARNING, no entry stored in dbm for [ENSG00000201600.1]
WARNING, no entry stored in dbm for [ENSG00000280124.1]
WARNING, no entry stored in dbm for [ENSG00000230461.9]
WARNING, no entry stored in dbm for [ENSG00000274602.5]
WARNING, no entry stored in dbm for [ENSG00000232556.1]
WARNING, no entry stored in dbm for [ENSG00000277270.2]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000245694.10]
WARNING, no entry stored in dbm for [ENSG00000285855.1]
WARNING, no entry stored in dbm for [ENSG00000250961.2]
WARNING, no entry stored in dbm for [ENSG00000180066.10]
WARNING, no entry stored in dbm for [ENSG00000272197.2]
WARNING, no entry stored in dbm for [ENSG00000276956.1]
WARNING, no entry stored in dbm for [ENSG00000239942.2]
WARNING, no entry stored in dbm for [ENSG00000266467.2]
WARNING, no entry stored in dbm for [ENSG00000268545.1]
WARNING, no entry stored in dbm for [ENSG00000225422.4]
WARNING, no entry stored in dbm for [ENSG00000249476.2]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000237986.4]
WARNING, no entry stored in dbm for [ENSG00000229893.2]
WARNING, no entry stored in dbm for [ENSG00000205611.5]
WARNING, no entry stored in dbm for [ENSG00000227036.8]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000267244.5]
WARNING, no entry stored in dbm for [ENSG00000253647.1]
WARNING, no entry stored in dbm for [ENSG00000249286.1]
WARNING, no entry stored in dbm for [ENSG00000214045.3]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000275216.2]
WARNING, no entry stored in dbm for [ENSG00000236206.2]
WARNING, no entry stored in dbm for [ENSG00000250208.6]
WARNING, no entry stored in dbm for [ENSG00000088340.17]
WARNING, no entry stored in dbm for [ENSG00000248429.5]
WARNING, no entry stored in dbm for [ENSG00000248290.1]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000181577.16]
WARNING, no entry stored in dbm for [ENSG00000224413.1]
WARNING, no entry stored in dbm for [ENSG00000233995.1]
WARNING, no entry stored in dbm for [ENSG00000233995.1]
WARNING, no entry stored in dbm for [ENSG00000233995.1]
WARNING, no entry stored in dbm for [ENSG00000233995.1]
WARNING, no entry stored in dbm for [ENSG00000285608.1]
WARNING, no entry stored in dbm for [ENSG00000234026.1]
WARNING, no entry stored in dbm for [ENSG00000274691.1]
WARNING, no entry stored in dbm for [ENSG00000224691.1]
WARNING, no entry stored in dbm for [ENSG00000242779.7]
WARNING, no entry stored in dbm for [ENSG00000236526.1]
WARNING, no entry stored in dbm for [ENSG00000249306.6]
WARNING, no entry stored in dbm for [ENSG00000231536.1]
WARNING, no entry stored in dbm for [ENSG00000266865.6]
WARNING, no entry stored in dbm for [ENSG00000214999.3]
WARNING, no entry stored in dbm for [ENSG00000261924.1]
WARNING, no entry stored in dbm for [ENSG00000241770.1]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000243620.2]
WARNING, no entry stored in dbm for [ENSG00000285336.1]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000261265.1]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000225792.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.1hQh84VkpR/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)