File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/2364a6ff70795ca4e81d24fac668f7/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/fe0645f1d7dcdfef6b3ad9b4f07be2/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/2364a6ff70795ca4e81d24fac668f7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/2364a6ff70795ca4e81d24fac668f7/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_full_basic_stats.tsv to BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias