File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d345b69a6a0f9275b7894d78c7c1e1/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (22Rv1_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/0c95ee27a3afbad9e361a65c31958d/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/13a0da7a90913d31925104f03d721b/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d345b69a6a0f9275b7894d78c7c1e1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/10bb890d2eee930d920cb0d625bfbd/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d345b69a6a0f9275b7894d78c7c1e1/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 6518749
[W::hts_idx_load3] The index file is older than the data file: 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	6518749
Known Splicing Events:	6398540
Partial Novel Splicing Events:	42071
Novel Splicing Events:	73405
Filtered Splicing Events:	4733

Total splicing  Junctions:	129408
Known Splicing Junctions:	119806
Partial Novel Splicing Junctions:	4598
Novel Splicing Junctions:	5004

===================================================================
Create BED file ...
Create Interact file ...