.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (22Rv1_FFPE_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/bcb26d65f5fba0e991e9dec7d5aee8/.command.sh
Size: 430 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (22Rv1_FFPE_RNA_0001_B23LG7FLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.predictions.csv" \
    --output "22Rv1_FFPE_RNA_0001_B23LG7FLT4_2_contamination_mqc.tsv" \
    --sample-id "22Rv1_FFPE_RNA_0001_B23LG7FLT4_2"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS