Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/23677ccc4d2b40c8b99bdeb5215367/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/cac338698952731907b7584bf502c1/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/13a0da7a90913d31925104f03d721b/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/16eee22c43f1d3c6d9ca2198258b29/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/16eee22c43f1d3c6d9ca2198258b29/.command.run
==> STAGING COMPLETE (5 inputs)

reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15) splicing reads. 8 splicing junctions. 3 known splicing junctions. 5 novel splicing junctions.
sampling 10% (30) splicing reads. 16 splicing junctions. 4 known splicing junctions. 12 novel splicing junctions.
sampling 15% (45) splicing reads. 19 splicing junctions. 4 known splicing junctions. 15 novel splicing junctions.
sampling 20% (60) splicing reads. 19 splicing junctions. 4 known splicing junctions. 15 novel splicing junctions.
sampling 25% (75) splicing reads. 21 splicing junctions. 4 known splicing junctions. 17 novel splicing junctions.
sampling 30% (90) splicing reads. 24 splicing junctions. 4 known splicing junctions. 20 novel splicing junctions.
sampling 35% (105) splicing reads. 28 splicing junctions. 4 known splicing junctions. 24 novel splicing junctions.
sampling 40% (120) splicing reads. 29 splicing junctions. 4 known splicing junctions. 25 novel splicing junctions.
sampling 45% (135) splicing reads. 29 splicing junctions. 4 known splicing junctions. 25 novel splicing junctions.
sampling 50% (151) splicing reads. 30 splicing junctions. 4 known splicing junctions. 26 novel splicing junctions.
sampling 55% (166) splicing reads. 30 splicing junctions. 4 known splicing junctions. 26 novel splicing junctions.
sampling 60% (181) splicing reads. 30 splicing junctions. 4 known splicing junctions. 26 novel splicing junctions.
sampling 65% (196) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 70% (211) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 75% (226) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 80% (241) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 85% (256) splicing reads. 33 splicing junctions. 4 known splicing junctions. 29 novel splicing junctions.
sampling 90% (271) splicing reads. 33 splicing junctions. 4 known splicing junctions. 29 novel splicing junctions.
sampling 95% (286) splicing reads. 33 splicing junctions. 4 known splicing junctions. 29 novel splicing junctions.
sampling 100% (302) splicing reads. 35 splicing junctions. 4 known splicing junctions. 31 novel splicing junctions.
null device 
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