-ctat genome lib [/tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.hPu4X30PWS/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary
-sample contains 212424680 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir -J /tmp/nxf.hPu4X30PWS/SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.hPu4X30PWS/SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[2700000], rate=92518.56/min -building interval tree based on /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[2710000], rate=77799.04/min -building interval tree based on /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[2700000], rate=57733.43/min -building interval tree based on /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[2710000], rate=51504.59/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir --filt_file /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
12000000.00 reads per min processed...
9000000.00 reads per min processed...
8000000.00 reads per min processed...
10000000.00 reads per min processed...
9000000.00 reads per min processed...
10500000.00 reads per min processed...
9600000.00 reads per min processed...
9000000.00 reads per min processed...
10000000.00 reads per min processed...
8250000.00 reads per min processed...
8000000.00 reads per min processed...
7090909.09 reads per min processed...
7000000.00 reads per min processed...
6428571.43 reads per min processed...
6400000.00 reads per min processed...
6000000.00 reads per min processed...
6000000.00 reads per min processed...
5700000.00 reads per min processed...
5714285.71 reads per min processed...
5478260.87 reads per min processed...
5500000.00 reads per min processed...
5307692.31 reads per min processed...
5333333.33 reads per min processed...
5172413.79 reads per min processed...
5200000.00 reads per min processed...
5062500.00 reads per min processed...
4941176.47 reads per min processed...
4833333.33 reads per min processed...
4736842.11 reads per min processed...
4769230.77 reads per min processed...
4682926.83 reads per min processed...
4604651.16 reads per min processed...
4533333.33 reads per min processed...
4468085.11 reads per min processed...
4408163.27 reads per min processed...
4440000.00 reads per min processed...
4384615.38 reads per min processed...
4415094.34 reads per min processed...
4444444.44 reads per min processed...
4472727.27 reads per min processed...
4500000.00 reads per min processed...
4448275.86 reads per min processed...
4474576.27 reads per min processed...
4500000.00 reads per min processed...
4524590.16 reads per min processed...
4476190.48 reads per min processed...
4500000.00 reads per min processed...
4523076.92 reads per min processed...
4477611.94 reads per min processed...
4500000.00 reads per min processed...
4588235.29 reads per min processed...
4608695.65 reads per min processed...
4628571.43 reads per min processed...
4714285.71 reads per min processed...
4732394.37 reads per min processed...
4750000.00 reads per min processed...
4833333.33 reads per min processed...
4783783.78 reads per min processed...
4736842.11 reads per min processed...
4753246.75 reads per min processed...
4708860.76 reads per min processed...
4725000.00 reads per min processed...
4682926.83 reads per min processed...
4698795.18 reads per min processed...
4658823.53 reads per min processed...
4674418.60 reads per min processed...
4689655.17 reads per min processed...
4651685.39 reads per min processed...
4615384.62 reads per min processed...
4630434.78 reads per min processed...
4645161.29 reads per min processed...
4659574.47 reads per min processed...
4673684.21 reads per min processed...
4639175.26 reads per min processed...
4606060.61 reads per min processed...
4574257.43 reads per min processed...
4543689.32 reads per min processed...
4514285.71 reads per min processed...
4485981.31 reads per min processed...
4500000.00 reads per min processed...
4472727.27 reads per min processed...
4446428.57 reads per min processed...
4421052.63 reads per min processed...
4396551.72 reads per min processed...
4410256.41 reads per min processed...
4386554.62 reads per min processed...
4400000.00 reads per min processed...
4377049.18 reads per min processed...
4390243.90 reads per min processed...
4368000.00 reads per min processed...
4380952.38 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.hPu4X30PWS/SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -113767.584415
EM: Round [1] log likelihood: -113603.416277
EM: Round [2] log likelihood: -113538.485116
EM: Round [3] log likelihood: -113506.356707
EM: Round [4] log likelihood: -113488.986545
EM: Round [5] log likelihood: -113479.151021
EM: Round [6] log likelihood: -113473.356939
EM: Round [7] log likelihood: -113469.797488
EM: Round [8] log likelihood: -113467.514790
EM: Round [9] log likelihood: -113465.989662
EM: Round [10] log likelihood: -113464.932382
EM: Round [11] log likelihood: -113464.175561
EM: Round [12] log likelihood: -113463.618827
EM: Round [13] log likelihood: -113463.199735
EM: Round [14] log likelihood: -113462.878053
EM: Round [15] log likelihood: -113462.627019
EM: Round [16] log likelihood: -113462.428316
EM: Round [17] log likelihood: -113462.269085
EM: Round [18] log likelihood: -113462.140101
EM: Round [19] log likelihood: -113462.034616
EM: Round [20] log likelihood: -113461.947608
EM: Round [21] log likelihood: -113461.875286
EM: Round [22] log likelihood: -113461.814748
EM: Round [23] log likelihood: -113461.763747
EM: Round [24] log likelihood: -113461.720525
EM: Round [25] log likelihood: -113461.683691
EM: Round [26] log likelihood: -113461.652136
EM: Round [27] log likelihood: -113461.624969
EM: Round [28] log likelihood: -113461.601470
EM: Round [29] log likelihood: -113461.581049
EM: Round [30] log likelihood: -113461.563226
EM: Round [31] log likelihood: -113461.547602
EM: Round [32] log likelihood: -113461.533849
EM: Round [33] log likelihood: -113461.521693
EM: Round [34] log likelihood: -113461.510904
EM: Round [35] log likelihood: -113461.501291
EM: Round [36] log likelihood: -113461.492692
EM: Round [37] log likelihood: -113461.484970
EM: Round [38] log likelihood: -113461.478010
EM: Round [39] log likelihood: -113461.471712
EM: Round [40] log likelihood: -113461.465993
EM: Round [41] log likelihood: -113461.460782
EM: Round [42] log likelihood: -113461.456016
EM: Round [43] log likelihood: -113461.451643
EM: Round [44] log likelihood: -113461.447617
EM: Round [45] log likelihood: -113461.443899
EM: Round [46] log likelihood: -113461.440455
EM: Round [47] log likelihood: -113461.437256
EM: Round [48] log likelihood: -113461.434276
EM: Round [49] log likelihood: -113461.431492
EM: Round [50] log likelihood: -113461.428885
EM: Round [51] log likelihood: -113461.426438
EM: Round [52] log likelihood: -113461.424136
EM: Round [53] log likelihood: -113461.421966
EM: Round [54] log likelihood: -113461.419917
EM: Round [55] log likelihood: -113461.417977
EM: Round [56] log likelihood: -113461.416138
EM: Round [57] log likelihood: -113461.414392
EM: Round [58] log likelihood: -113461.412732
EM: Round [59] log likelihood: -113461.411150
EM: Round [60] log likelihood: -113461.409643
EM: Round [61] log likelihood: -113461.408203
EM: Round [62] log likelihood: -113461.406827
EM: Round [63] log likelihood: -113461.405511
EM: Round [64] log likelihood: -113461.404251
EM: Round [65] log likelihood: -113461.403042
EM: Round [66] log likelihood: -113461.401883
EM: Round [67] log likelihood: -113461.400771
EM: Round [68] log likelihood: -113461.399702
EM: Round [69] log likelihood: -113461.398675
EM: Round [70] log likelihood: -113461.397686
EM: Round [71] log likelihood: -113461.396735
EM: Round [72] log likelihood: -113461.395820
EM: Round [73] log likelihood: -113461.394938
EM: Round [74] log likelihood: -113461.394088
EM: Round [75] log likelihood: -113461.393269
EM: Round [76] log likelihood: -113461.392478
EM: Round [77] log likelihood: -113461.391716
EM: Round [78] log likelihood: -113461.390980
EM: Round [79] log likelihood: -113461.390270
EM: Round [80] log likelihood: -113461.389585
EM: Round [81] log likelihood: -113461.388922
EM: Round [82] log likelihood: -113461.388283
EM: Round [83] log likelihood: -113461.387665
EM: Round [84] log likelihood: -113461.387068
EM: Round [85] log likelihood: -113461.386490
EM: Round [86] log likelihood: -113461.385932
EM: Round [87] log likelihood: -113461.385393
EM: Round [88] log likelihood: -113461.384871
EM: Round [89] log likelihood: -113461.384367
EM: Round [90] log likelihood: -113461.383879
EM: Round [91] log likelihood: -113461.383406
EM: Round [92] log likelihood: -113461.382950
EM: Round [93] log likelihood: -113461.382508
EM: Round [94] log likelihood: -113461.382080
EM: Round [95] log likelihood: -113461.381666
EM: Round [96] log likelihood: -113461.381266
EM: Round [97] log likelihood: -113461.380878
EM: Round [98] log likelihood: -113461.380503
EM: Round [99] log likelihood: -113461.380139
EM: Round [100] log likelihood: -113461.379787
EM: Round [101] log likelihood: -113461.379447
EM: Round [102] log likelihood: -113461.379117
EM: Round [103] log likelihood: -113461.378798
EM: Round [104] log likelihood: -113461.378488
EM: Round [105] log likelihood: -113461.378189
EM: Round [106] log likelihood: -113461.377899
EM: Round [107] log likelihood: -113461.377617
EM: Round [108] log likelihood: -113461.377345
EM: Round [109] log likelihood: -113461.377081
EM: Round [110] log likelihood: -113461.376826
EM: Round [111] log likelihood: -113461.376578
EM: Round [112] log likelihood: -113461.376339
EM: Round [113] log likelihood: -113461.376106
EM: Round [114] log likelihood: -113461.375881
EM: Round [115] log likelihood: -113461.375663
EM: Round [116] log likelihood: -113461.375451
EM: Round [117] log likelihood: -113461.375246
EM: Round [118] log likelihood: -113461.375047
EM: Round [119] log likelihood: -113461.374855
EM: Round [120] log likelihood: -113461.374668
EM: Round [121] log likelihood: -113461.374487
EM: Round [122] log likelihood: -113461.374312
EM: Round [123] log likelihood: -113461.374142
EM: Round [124] log likelihood: -113461.373977
EM: Round [125] log likelihood: -113461.373817
EM: Round [126] log likelihood: -113461.373662
EM: Round [127] log likelihood: -113461.373511
EM: Round [128] log likelihood: -113461.373365
EM: Round [129] log likelihood: -113461.373224
EM: Round [130] log likelihood: -113461.373086
EM: Round [131] log likelihood: -113461.372953
EM: Round [132] log likelihood: -113461.372824
EM: Round [133] log likelihood: -113461.372699
EM: Round [134] log likelihood: -113461.372577
EM: Round [135] log likelihood: -113461.372459
EM: Round [136] log likelihood: -113461.372345
EM: Round [137] log likelihood: -113461.372234
EM: Round [138] log likelihood: -113461.372126
EM: Round [139] log likelihood: -113461.372021
EM: Round [140] log likelihood: -113461.371920
EM: Round [141] log likelihood: -113461.371821
EM: Stopping iterations at round 141 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -113607.902682
EM: Round [1] log likelihood: -113463.722970
EM: Round [2] log likelihood: -113408.598770
EM: Round [3] log likelihood: -113382.036054
EM: Round [4] log likelihood: -113367.956261
EM: Round [5] log likelihood: -113360.110022
EM: Round [6] log likelihood: -113355.555613
EM: Round [7] log likelihood: -113352.799357
EM: Round [8] log likelihood: -113351.059129
EM: Round [9] log likelihood: -113349.914985
EM: Round [10] log likelihood: -113349.134566
EM: Round [11] log likelihood: -113348.584775
EM: Round [12] log likelihood: -113348.186542
EM: Round [13] log likelihood: -113347.891163
EM: Round [14] log likelihood: -113347.667598
EM: Round [15] log likelihood: -113347.495434
EM: Round [16] log likelihood: -113347.360862
EM: Round [17] log likelihood: -113347.254307
EM: Round [18] log likelihood: -113347.168979
EM: Round [19] log likelihood: -113347.099969
EM: Round [20] log likelihood: -113347.043665
EM: Round [21] log likelihood: -113346.997370
EM: Round [22] log likelihood: -113346.959039
EM: Round [23] log likelihood: -113346.927105
EM: Round [24] log likelihood: -113346.900351
EM: Round [25] log likelihood: -113346.877823
EM: Round [26] log likelihood: -113346.858764
EM: Round [27] log likelihood: -113346.842573
EM: Round [28] log likelihood: -113346.828763
EM: Round [29] log likelihood: -113346.816942
EM: Round [30] log likelihood: -113346.806787
EM: Round [31] log likelihood: -113346.798036
EM: Round [32] log likelihood: -113346.790470
EM: Round [33] log likelihood: -113346.783911
EM: Round [34] log likelihood: -113346.778207
EM: Round [35] log likelihood: -113346.773232
EM: Round [36] log likelihood: -113346.768883
EM: Round [37] log likelihood: -113346.765069
EM: Round [38] log likelihood: -113346.761715
EM: Round [39] log likelihood: -113346.758759
EM: Round [40] log likelihood: -113346.756146
EM: Round [41] log likelihood: -113346.753830
EM: Round [42] log likelihood: -113346.751772
EM: Round [43] log likelihood: -113346.749939
EM: Round [44] log likelihood: -113346.748300
EM: Round [45] log likelihood: -113346.746832
EM: Round [46] log likelihood: -113346.745514
EM: Round [47] log likelihood: -113346.744327
EM: Round [48] log likelihood: -113346.743254
EM: Round [49] log likelihood: -113346.742283
EM: Round [50] log likelihood: -113346.741401
EM: Round [51] log likelihood: -113346.740599
EM: Round [52] log likelihood: -113346.739866
EM: Round [53] log likelihood: -113346.739195
EM: Round [54] log likelihood: -113346.738580
EM: Round [55] log likelihood: -113346.738013
EM: Round [56] log likelihood: -113346.737491
EM: Round [57] log likelihood: -113346.737008
EM: Round [58] log likelihood: -113346.736560
EM: Round [59] log likelihood: -113346.736145
EM: Round [60] log likelihood: -113346.735757
EM: Round [61] log likelihood: -113346.735396
EM: Round [62] log likelihood: -113346.735058
EM: Round [63] log likelihood: -113346.734741
EM: Round [64] log likelihood: -113346.734444
EM: Round [65] log likelihood: -113346.734164
EM: Round [66] log likelihood: -113346.733900
EM: Round [67] log likelihood: -113346.733651
EM: Round [68] log likelihood: -113346.733415
EM: Round [69] log likelihood: -113346.733191
EM: Round [70] log likelihood: -113346.732980
EM: Round [71] log likelihood: -113346.732778
EM: Round [72] log likelihood: -113346.732587
EM: Round [73] log likelihood: -113346.732404
EM: Round [74] log likelihood: -113346.732230
EM: Round [75] log likelihood: -113346.732064
EM: Round [76] log likelihood: -113346.731905
EM: Round [77] log likelihood: -113346.731752
EM: Round [78] log likelihood: -113346.731607
EM: Round [79] log likelihood: -113346.731467
EM: Round [80] log likelihood: -113346.731333
EM: Round [81] log likelihood: -113346.731204
EM: Round [82] log likelihood: -113346.731080
EM: Round [83] log likelihood: -113346.730961
EM: Round [84] log likelihood: -113346.730846
EM: Round [85] log likelihood: -113346.730735
EM: Round [86] log likelihood: -113346.730629
EM: Round [87] log likelihood: -113346.730526
EM: Round [88] log likelihood: -113346.730427
EM: Stopping iterations at round 88 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 212424680 > /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir > /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir --annotate /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir
-done, see /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 786, filtered: 6396)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.hPu4X30PWS/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.hPu4X30PWS/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000287721.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000276047.1]
WARNING, no entry stored in dbm for [ENSG00000241529.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000215458.8]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000241175.3]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000228754.1]
WARNING, no entry stored in dbm for [ENSG00000239397.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000287516.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000287243.2]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000287985.1]
WARNING, no entry stored in dbm for [ENSG00000250145.1]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000226051.8]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000233554.6]
WARNING, no entry stored in dbm for [ENSG00000251591.2]
WARNING, no entry stored in dbm for [ENSG00000201749.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000229036.7]
WARNING, no entry stored in dbm for [ENSG00000249700.9]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000232600.3]
WARNING, no entry stored in dbm for [ENSG00000260848.2]
WARNING, no entry stored in dbm for [ENSG00000213071.11]
WARNING, no entry stored in dbm for [ENSG00000263873.1]
WARNING, no entry stored in dbm for [ENSG00000259421.1]
WARNING, no entry stored in dbm for [ENSG00000287941.1]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000244502.2]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000279738.1]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000242082.2]
WARNING, no entry stored in dbm for [ENSG00000224186.8]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000228948.2]
WARNING, no entry stored in dbm for [ENSG00000226419.8]
WARNING, no entry stored in dbm for [ENSG00000269904.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000259278.2]
WARNING, no entry stored in dbm for [ENSG00000228956.8]
WARNING, no entry stored in dbm for [ENSG00000217929.4]
WARNING, no entry stored in dbm for [ENSG00000240087.3]
WARNING, no entry stored in dbm for [ENSG00000233836.7]
WARNING, no entry stored in dbm for [ENSG00000236549.1]
WARNING, no entry stored in dbm for [ENSG00000230037.1]
WARNING, no entry stored in dbm for [ENSG00000244392.3]
WARNING, no entry stored in dbm for [ENSG00000239437.3]
WARNING, no entry stored in dbm for [ENSG00000266828.2]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000240183.3]
WARNING, no entry stored in dbm for [ENSG00000202058.1]
WARNING, no entry stored in dbm for [ENSG00000202406.1]
WARNING, no entry stored in dbm for [ENSG00000213423.4]
WARNING, no entry stored in dbm for [ENSG00000252574.2]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000287356.1]
WARNING, no entry stored in dbm for [ENSG00000277270.2]
WARNING, no entry stored in dbm for [ENSG00000250116.2]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000239224.3]
WARNING, no entry stored in dbm for [ENSG00000236432.8]
WARNING, no entry stored in dbm for [ENSG00000228546.2]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000253392.3]
WARNING, no entry stored in dbm for [ENSG00000247828.8]
WARNING, no entry stored in dbm for [ENSG00000244257.5]
WARNING, no entry stored in dbm for [ENSG00000285930.1]
WARNING, no entry stored in dbm for [ENSG00000237266.2]
WARNING, no entry stored in dbm for [ENSG00000226949.1]
WARNING, no entry stored in dbm for [ENSG00000244479.7]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000273068.1]
WARNING, no entry stored in dbm for [ENSG00000260075.1]
WARNING, no entry stored in dbm for [ENSG00000214293.9]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000288557.1]
WARNING, no entry stored in dbm for [ENSG00000177406.5]
WARNING, no entry stored in dbm for [ENSG00000236859.7]
WARNING, no entry stored in dbm for [ENSG00000262039.1]
WARNING, no entry stored in dbm for [ENSG00000212978.6]
WARNING, no entry stored in dbm for [ENSG00000249747.1]
WARNING, no entry stored in dbm for [ENSG00000235110.5]
WARNING, no entry stored in dbm for [ENSG00000270504.1]
WARNING, no entry stored in dbm for [ENSG00000240677.1]
WARNING, no entry stored in dbm for [ENSG00000255177.2]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000264697.1]
WARNING, no entry stored in dbm for [ENSG00000269779.1]
WARNING, no entry stored in dbm for [ENSG00000269779.1]
WARNING, no entry stored in dbm for [ENSG00000249867.6]
WARNING, no entry stored in dbm for [ENSG00000236753.7]
WARNING, no entry stored in dbm for [ENSG00000230068.2]
WARNING, no entry stored in dbm for [ENSG00000236172.7]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000233673.7]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000272690.6]
WARNING, no entry stored in dbm for [ENSG00000270442.1]
WARNING, no entry stored in dbm for [ENSG00000228109.1]
WARNING, no entry stored in dbm for [ENSG00000269292.1]
WARNING, no entry stored in dbm for [ENSG00000250189.2]
WARNING, no entry stored in dbm for [ENSG00000251034.2]
WARNING, no entry stored in dbm for [ENSG00000249383.2]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000247675.7]
WARNING, no entry stored in dbm for [ENSG00000250868.4]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000250252.2]
WARNING, no entry stored in dbm for [ENSG00000268532.1]
WARNING, no entry stored in dbm for [ENSG00000244649.5]
WARNING, no entry stored in dbm for [ENSG00000261008.7]
WARNING, no entry stored in dbm for [ENSG00000255171.7]
WARNING, no entry stored in dbm for [ENSG00000250634.6]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000241135.6]
WARNING, no entry stored in dbm for [ENSG00000228221.6]
WARNING, no entry stored in dbm for [ENSG00000231574.6]
WARNING, no entry stored in dbm for [ENSG00000267727.1]
WARNING, no entry stored in dbm for [ENSG00000258120.2]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000268580.1]
WARNING, no entry stored in dbm for [ENSG00000266066.1]
WARNING, no entry stored in dbm for [ENSG00000234512.1]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000287352.1]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000255545.8]
WARNING, no entry stored in dbm for [ENSG00000270318.1]
WARNING, no entry stored in dbm for [ENSG00000224585.1]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000099251.14]
WARNING, no entry stored in dbm for [ENSG00000254369.6]
WARNING, no entry stored in dbm for [ENSG00000233231.1]
WARNING, no entry stored in dbm for [ENSG00000180150.5]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000259994.1]
WARNING, no entry stored in dbm for [ENSG00000236296.8]
WARNING, no entry stored in dbm for [ENSG00000172297.7]
WARNING, no entry stored in dbm for [ENSG00000249966.1]
WARNING, no entry stored in dbm for [ENSG00000231166.2]
WARNING, no entry stored in dbm for [ENSG00000225685.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000241860.7]
WARNING, no entry stored in dbm for [ENSG00000260464.1]
WARNING, no entry stored in dbm for [ENSG00000226724.1]
WARNING, no entry stored in dbm for [ENSG00000215093.3]
WARNING, no entry stored in dbm for [ENSG00000259612.1]
WARNING, no entry stored in dbm for [ENSG00000214548.18]
WARNING, no entry stored in dbm for [ENSG00000267083.1]
WARNING, no entry stored in dbm for [ENSG00000279861.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000267169.2]
WARNING, no entry stored in dbm for [ENSG00000271638.1]
WARNING, no entry stored in dbm for [ENSG00000237773.7]
WARNING, no entry stored in dbm for [ENSG00000242880.2]
WARNING, no entry stored in dbm for [ENSG00000234337.4]
WARNING, no entry stored in dbm for [ENSG00000286021.2]
WARNING, no entry stored in dbm for [ENSG00000225733.6]
WARNING, no entry stored in dbm for [ENSG00000254162.1]
WARNING, no entry stored in dbm for [ENSG00000273399.2]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [ENSG00000269540.1]
WARNING, no entry stored in dbm for [ENSG00000249328.3]
WARNING, no entry stored in dbm for [ENSG00000228928.1]
WARNING, no entry stored in dbm for [ENSG00000228876.4]
WARNING, no entry stored in dbm for [ENSG00000287137.1]
WARNING, no entry stored in dbm for [ENSG00000216629.1]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000243069.8]
WARNING, no entry stored in dbm for [ENSG00000231334.2]
WARNING, no entry stored in dbm for [ENSG00000255847.5]
WARNING, no entry stored in dbm for [ENSG00000259738.1]
WARNING, no entry stored in dbm for [ENSG00000256196.2]
WARNING, no entry stored in dbm for [ENSG00000245970.2]
WARNING, no entry stored in dbm for [ENSG00000245970.2]
WARNING, no entry stored in dbm for [ENSG00000286628.1]
WARNING, no entry stored in dbm for [ENSG00000264964.2]
WARNING, no entry stored in dbm for [ENSG00000286643.1]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000285799.1]
WARNING, no entry stored in dbm for [ENSG00000254741.1]
WARNING, no entry stored in dbm for [ENSG00000285907.1]
WARNING, no entry stored in dbm for [ENSG00000273381.1]
WARNING, no entry stored in dbm for [ENSG00000231078.1]
WARNING, no entry stored in dbm for [ENSG00000287346.1]
WARNING, no entry stored in dbm for [ENSG00000235944.8]
WARNING, no entry stored in dbm for [ENSG00000230153.5]
WARNING, no entry stored in dbm for [ENSG00000277011.1]
WARNING, no entry stored in dbm for [ENSG00000237017.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000280068.1]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000255158.1]
WARNING, no entry stored in dbm for [ENSG00000285668.1]
WARNING, no entry stored in dbm for [ENSG00000285668.1]
WARNING, no entry stored in dbm for [ENSG00000284678.1]
WARNING, no entry stored in dbm for [ENSG00000244398.1]
WARNING, no entry stored in dbm for [ENSG00000226107.1]
WARNING, no entry stored in dbm for [ENSG00000272922.1]
WARNING, no entry stored in dbm for [ENSG00000248973.3]
WARNING, no entry stored in dbm for [ENSG00000250159.7]
WARNING, no entry stored in dbm for [ENSG00000286159.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000253123.4]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000243979.2]
WARNING, no entry stored in dbm for [ENSG00000259275.4]
WARNING, no entry stored in dbm for [ENSG00000243531.1]
WARNING, no entry stored in dbm for [ENSG00000271977.1]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000276407.5]
WARNING, no entry stored in dbm for [ENSG00000248898.3]
WARNING, no entry stored in dbm for [ENSG00000186019.11]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000286195.1]
WARNING, no entry stored in dbm for [ENSG00000204929.13]
WARNING, no entry stored in dbm for [ENSG00000274378.1]
WARNING, no entry stored in dbm for [ENSG00000277476.1]
WARNING, no entry stored in dbm for [ENSG00000239622.1]
WARNING, no entry stored in dbm for [ENSG00000286883.1]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000198658.4]
* STAR-Fusion complete. See output: /tmp/nxf.hPu4X30PWS/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)