[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	314672324
Known Splicing Events:	312301461
Partial Novel Splicing Events:	1622268
Novel Splicing Events:	665905
Filtered Splicing Events:	82690

Total splicing  Junctions:	607639
Known Splicing Junctions:	278846
Partial Novel Splicing Junctions:	181984
Novel Splicing Junctions:	146809

===================================================================
Create BED file ...
Create Interact file ...