Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/13a0da7a90913d31925104f03d721b/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/51cdcc9b68cd0f06418516e0324a4a/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ab06eab8f3f5b2435d6dcab0f38d31/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ab06eab8f3f5b2435d6dcab0f38d31/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/c82e10e1f775b5e770785b1bfc3423/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 314672324
[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	314672324
Known Splicing Events:	312301461
Partial Novel Splicing Events:	1622268
Novel Splicing Events:	665905
Filtered Splicing Events:	82690

Total splicing  Junctions:	607639
Known Splicing Junctions:	278846
Partial Novel Splicing Junctions:	181984
Novel Splicing Junctions:	146809

===================================================================
Create BED file ...
Create Interact file ...