[W::hts_idx_load3] The index file is older than the data file: BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	2878292
Known Splicing Events:	2801360
Partial Novel Splicing Events:	15144
Novel Splicing Events:	58002
Filtered Splicing Events:	3786

Total splicing  Junctions:	47633
Known Splicing Junctions:	45324
Partial Novel Splicing Junctions:	618
Novel Splicing Junctions:	1691

===================================================================
Create BED file ...
Create Interact file ...