AIH curated blacklist: matched 10 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 190
Pass (FILTER=PASS): 38 (20.0%)
Fail (FILTER=FAIL): 152 (80.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 10
All 10 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 44
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 28
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 14
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 11
confidence_below_min(low<high): 9
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 4
total_reads_below_min(3.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
Breakdown by confidence:
high: 38 pass, 3 fail (total: 41)
low: 0 pass, 74 fail (total: 74)
medium: 0 pass, 75 fail (total: 75)
Arriba filter: 190 rows -> 38 PASS; wrote OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt