Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/62858aec25049743d1c00e58ea7f69/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/62858aec25049743d1c00e58ea7f69/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/993d7220d8446b61d7f0e428187633/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_2.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:29:09.085 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:29:09 GMT 2026] MarkDuplicates --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_2.md.bam --METRICS_FILE A673_FFPE_RNA_0001_B23LG7FLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:29:09 GMT 2026] Executing as ?@nf-1962858aec25049743d1c00e58ea7f69-e6625-lmdnz on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:29:09 MarkDuplicates Start of doWork freeMemory: 105828320; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:29:09 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:29:09 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,286,957
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 2395 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:29:15 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,790,558
INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 6172 as yet unmatched pairs. 1344 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:6,525,885
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 7887 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,865,421
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 10366 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,026,879
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 12414 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:12,333,241
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 14682 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:16,348,129
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 16820 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:29:26 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,112,674
INFO 2026-06-08 08:29:26 MarkDuplicates Tracking 19281 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:20,773,535
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 21699 as yet unmatched pairs. 565 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,081,509
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 25319 as yet unmatched pairs. 1893 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:24,827,061
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 26655 as yet unmatched pairs. 1064 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:26,772,499
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 28210 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:28,279,157
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 30363 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:30,933,231
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 32774 as yet unmatched pairs. 676 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,771
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 35474 as yet unmatched pairs. 1035 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,716
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 40031 as yet unmatched pairs. 3285 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,931,421
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 39547 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:38,004,712
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 41661 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:40,043,567
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 44272 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:42,851,601
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 46526 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:44,319,632
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 49449 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:46,006,357
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 51114 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:51,789,575
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 55824 as yet unmatched pairs. 2733 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:51,840,459
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 56548 as yet unmatched pairs. 1409 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:55,075,502
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 57736 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:62,477,741
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 59875 as yet unmatched pairs. 411 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,910
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 62243 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:77,878,573
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 63924 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:90,716,935
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 67990 as yet unmatched pairs. 2068 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:99,993,557
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 68600 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:109,273,565
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 70313 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:110,603,392
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 73069 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:113,981,224
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 75655 as yet unmatched pairs. 1137 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:116,388,140
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 78636 as yet unmatched pairs. 1941 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,734,650
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 79752 as yet unmatched pairs. 1040 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:121,384,891
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 80776 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:146,298,117
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 81908 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,475,734
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 83069 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,942
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 84762 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:150,552,233
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 86354 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:151,401,276
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 89933 as yet unmatched pairs. 1390 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,662,457
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 92095 as yet unmatched pairs. 2000 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,685
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 102875 as yet unmatched pairs. 10630 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,602,474
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 94619 as yet unmatched pairs. 381 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,323,553
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 96684 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,042,797
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 98986 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:156,743,314
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 101806 as yet unmatched pairs. 836 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:160,350,133
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 103528 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:164,560,002
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 105471 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,647
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 108275 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:179,847,621
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 109909 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:183,630,469
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 112115 as yet unmatched pairs. 579 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:186,015,185
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 114428 as yet unmatched pairs. 762 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,322,388
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 117841 as yet unmatched pairs. 2158 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:193,076,555
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 117922 as yet unmatched pairs. 440 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:201,313,520
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 121898 as yet unmatched pairs. 2296 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,712
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 122513 as yet unmatched pairs. 615 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:205,720,619
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 125170 as yet unmatched pairs. 1181 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,666
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 126278 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:222,627,745
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 128156 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:225,920,522
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 130141 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:228,293,475
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 132419 as yet unmatched pairs. 79 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,116
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 135198 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:244,855,478
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 137775 as yet unmatched pairs. 679 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 3s. Last read position: chr2:272,053
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 140334 as yet unmatched pairs. 137723 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:8,789,967
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 142140 as yet unmatched pairs. 139472 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:11,202,099
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 144424 as yet unmatched pairs. 141693 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:23,642,657
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 146398 as yet unmatched pairs. 143627 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:26,239,119
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 148344 as yet unmatched pairs. 145536 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:27,232,044
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 151344 as yet unmatched pairs. 148494 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,854
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 156065 as yet unmatched pairs. 153170 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,617,786
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 155387 as yet unmatched pairs. 152419 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 336654 as yet unmatched pairs. 140685 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 976076 as yet unmatched pairs. 99085 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1136076 as yet unmatched pairs. 88933 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,423
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1193373 as yet unmatched pairs. 85716 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:38,985,851
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 1212938 as yet unmatched pairs. 82634 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:43,574,786
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 1211370 as yet unmatched pairs. 81038 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:47,800,494
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 1209263 as yet unmatched pairs. 78884 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:55,234,840
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 1208061 as yet unmatched pairs. 77625 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:61,478,655
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 1204798 as yet unmatched pairs. 74325 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:65,268,963
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 1202659 as yet unmatched pairs. 72150 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:70,288,093
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 1203370 as yet unmatched pairs. 72811 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:73,769,265
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1198967 as yet unmatched pairs. 68372 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:74,959,340
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1196677 as yet unmatched pairs. 66050 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:86,144,707
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 1194963 as yet unmatched pairs. 64287 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:96,265,234
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 1193005 as yet unmatched pairs. 62316 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:99,169,578
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 1190625 as yet unmatched pairs. 59884 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:107,848,517
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 1188764 as yet unmatched pairs. 57976 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,966
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 1187779 as yet unmatched pairs. 56984 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,307
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1186109 as yet unmatched pairs. 55293 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:112,391,012
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1185100 as yet unmatched pairs. 54252 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:120,087,206
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 1183552 as yet unmatched pairs. 52672 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:130,153,319
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 1181774 as yet unmatched pairs. 50824 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:135,870,338
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 1179982 as yet unmatched pairs. 48977 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:151,465,344
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 1177926 as yet unmatched pairs. 46865 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:165,572,626
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 1175781 as yet unmatched pairs. 44677 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:171,834,727
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 1173579 as yet unmatched pairs. 42414 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:177,215,537
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 1173943 as yet unmatched pairs. 42730 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:183,021,582
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 1169525 as yet unmatched pairs. 38281 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:196,843,995
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 1167630 as yet unmatched pairs. 36342 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:200,913,973
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 1165622 as yet unmatched pairs. 34305 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:206,152,435
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 1163640 as yet unmatched pairs. 32287 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:214,778,812
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 1161730 as yet unmatched pairs. 30312 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,121
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1176231 as yet unmatched pairs. 44794 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,189
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 1162792 as yet unmatched pairs. 31337 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,253
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 1165373 as yet unmatched pairs. 33900 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,127
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 1158305 as yet unmatched pairs. 26814 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,393
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 1155090 as yet unmatched pairs. 23579 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:216,148,265
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 1150941 as yet unmatched pairs. 19407 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:218,234,058
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1147992 as yet unmatched pairs. 16420 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:219,386,346
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 1145389 as yet unmatched pairs. 13777 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:226,794,917
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 1143099 as yet unmatched pairs. 11396 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:231,080,219
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1141011 as yet unmatched pairs. 9266 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:232,844,041
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 1139018 as yet unmatched pairs. 7239 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:240,593,910
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 1136527 as yet unmatched pairs. 4674 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:241,115,065
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 1134192 as yet unmatched pairs. 2308 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:3,147,874
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 1132083 as yet unmatched pairs. 51854 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:10,301,360
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 1130502 as yet unmatched pairs. 50246 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:14,481,759
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 1128028 as yet unmatched pairs. 47742 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:25,620,730
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 1126921 as yet unmatched pairs. 46592 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:37,008,864
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 1124134 as yet unmatched pairs. 43775 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr3:44,450,902
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 1122071 as yet unmatched pairs. 41669 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:47,877,513
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 1119939 as yet unmatched pairs. 39493 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,348
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1117685 as yet unmatched pairs. 37196 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:52,211,324
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 1115416 as yet unmatched pairs. 34896 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:58,285,363
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 1114537 as yet unmatched pairs. 33987 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:88,058,161
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1111430 as yet unmatched pairs. 30816 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:101,682,801
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 1111118 as yet unmatched pairs. 30475 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:119,826,514
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 1107119 as yet unmatched pairs. 26413 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:125,288,213
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1105174 as yet unmatched pairs. 24425 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:128,620,491
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1102914 as yet unmatched pairs. 22133 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:132,332,320
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1100547 as yet unmatched pairs. 19727 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:139,367,014
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1098689 as yet unmatched pairs. 17819 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:149,965,204
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 1097503 as yet unmatched pairs. 16572 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:156,704,682
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1094626 as yet unmatched pairs. 13629 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:172,773,884
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 1092818 as yet unmatched pairs. 11775 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:183,672,410
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 1090438 as yet unmatched pairs. 9342 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:184,323,541
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 1088653 as yet unmatched pairs. 7530 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:186,790,143
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 1086334 as yet unmatched pairs. 5157 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:194,666,245
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 1083889 as yet unmatched pairs. 2670 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:197,883,646
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1081472 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr4:1,723,755
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1080476 as yet unmatched pairs. 38024 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:1,901,150
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1077191 as yet unmatched pairs. 34726 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:3,187,681
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 1074742 as yet unmatched pairs. 32223 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:7,855,494
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1072656 as yet unmatched pairs. 30084 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:17,819,967
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 1070590 as yet unmatched pairs. 27973 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:30,723,527
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1068353 as yet unmatched pairs. 25685 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:41,257,628
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 1070505 as yet unmatched pairs. 27775 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:56,459,430
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1063950 as yet unmatched pairs. 21179 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:78,180,978
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1061333 as yet unmatched pairs. 18529 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:86,784,511
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 1059971 as yet unmatched pairs. 17146 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:101,108,973
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 1058038 as yet unmatched pairs. 15158 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:107,712,101
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1055364 as yet unmatched pairs. 12433 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:121,380,431
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1053941 as yet unmatched pairs. 10962 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:127,812,796
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 1051289 as yet unmatched pairs. 8275 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:143,376,270
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1049403 as yet unmatched pairs. 6371 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr4:152,411,517
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1047593 as yet unmatched pairs. 4518 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:169,697,557
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 1046198 as yet unmatched pairs. 3068 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:186,620,898
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 1043602 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr5:5,463,076
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1041373 as yet unmatched pairs. 60234 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:14,394,059
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1040799 as yet unmatched pairs. 59623 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:16,818,057
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 1037330 as yet unmatched pairs. 56129 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:34,187,897
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 1034817 as yet unmatched pairs. 53586 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:37,170,096
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 1032918 as yet unmatched pairs. 51648 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:43,704,271
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 1031027 as yet unmatched pairs. 49687 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:61,541,922
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 1028783 as yet unmatched pairs. 47408 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,254
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1027277 as yet unmatched pairs. 45863 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:71,373,463
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 1025845 as yet unmatched pairs. 44402 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:73,498,508
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 1024803 as yet unmatched pairs. 43323 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:80,158,885
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 1021931 as yet unmatched pairs. 40409 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:95,513,595
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 1020477 as yet unmatched pairs. 38899 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:112,838,537
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 1018027 as yet unmatched pairs. 36392 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:126,826,022
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 1017093 as yet unmatched pairs. 35430 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:134,167,210
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 1016025 as yet unmatched pairs. 34328 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:138,386,170
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 1011953 as yet unmatched pairs. 30233 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:139,364,585
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1010296 as yet unmatched pairs. 28547 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:140,835,035
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 1007745 as yet unmatched pairs. 25919 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:141,188,700
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 1005910 as yet unmatched pairs. 24057 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:141,421,873
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 1003824 as yet unmatched pairs. 21946 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:146,153,758
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 1002543 as yet unmatched pairs. 20637 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:150,131,979
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 999366 as yet unmatched pairs. 17437 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:154,755,865
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 997268 as yet unmatched pairs. 15305 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:163,441,080
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 995466 as yet unmatched pairs. 13479 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,305
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 1003395 as yet unmatched pairs. 21379 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr5:171,405,362
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 1000626 as yet unmatched pairs. 18597 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:177,041,142
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 989176 as yet unmatched pairs. 7104 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:177,538,093
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 986749 as yet unmatched pairs. 4640 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,766,668
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 985616 as yet unmatched pairs. 3482 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr6:311,891
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 982250 as yet unmatched pairs. 66161 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:7,189,215
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 981614 as yet unmatched pairs. 65483 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:13,617,781
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 978457 as yet unmatched pairs. 62297 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:24,416,437
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 975887 as yet unmatched pairs. 59681 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,366
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 975217 as yet unmatched pairs. 58961 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr6:26,240,428
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 972399 as yet unmatched pairs. 56123 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:27,807,538
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 969901 as yet unmatched pairs. 53605 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,105
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 969997 as yet unmatched pairs. 53682 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr6:30,546,216
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 965057 as yet unmatched pairs. 48714 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,154,723
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 962915 as yet unmatched pairs. 46529 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,179
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 962258 as yet unmatched pairs. 45849 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,018
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 958755 as yet unmatched pairs. 42332 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:33,166,546
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 956280 as yet unmatched pairs. 39831 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:33,443,507
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 954249 as yet unmatched pairs. 37776 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:36,107,468
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 952042 as yet unmatched pairs. 35538 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:41,646,121
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 952793 as yet unmatched pairs. 36261 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:43,065,652
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 947157 as yet unmatched pairs. 30615 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,394
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 945190 as yet unmatched pairs. 28608 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,704
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 952953 as yet unmatched pairs. 36305 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:68,635,942
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 940992 as yet unmatched pairs. 24299 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:80,168,987
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 939296 as yet unmatched pairs. 22538 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:87,518,182
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 937468 as yet unmatched pairs. 20658 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:98,834,955
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 935077 as yet unmatched pairs. 18221 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:109,443,324
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 932947 as yet unmatched pairs. 16036 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:116,278,741
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 930846 as yet unmatched pairs. 13898 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:128,375,163
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 928738 as yet unmatched pairs. 11742 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:138,944,548
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 927405 as yet unmatched pairs. 10379 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:149,683,355
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 925066 as yet unmatched pairs. 7993 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:157,201,006
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 922695 as yet unmatched pairs. 5568 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:159,783,945
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 921409 as yet unmatched pairs. 4244 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:168,308,176
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 918195 as yet unmatched pairs. 999 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:1,499,095
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 915737 as yet unmatched pairs. 60080 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:4,781,714
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 912808 as yet unmatched pairs. 57092 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,292
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 913762 as yet unmatched pairs. 58018 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:6,147,766
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 907877 as yet unmatched pairs. 52105 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:18,086,901
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 905568 as yet unmatched pairs. 49755 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,677
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 908107 as yet unmatched pairs. 52257 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:35,873,745
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 902265 as yet unmatched pairs. 46374 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,719
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 899732 as yet unmatched pairs. 43815 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:48,372,270
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 897471 as yet unmatched pairs. 41516 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:70,771,570
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 895522 as yet unmatched pairs. 39525 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:73,596,751
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 894089 as yet unmatched pairs. 38074 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:75,188,083
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 892751 as yet unmatched pairs. 36716 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,026
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 890982 as yet unmatched pairs. 34922 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:90,232,296
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 889013 as yet unmatched pairs. 32917 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:92,226,543
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 886700 as yet unmatched pairs. 30573 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr7:97,854,663
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 884975 as yet unmatched pairs. 28806 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,023,566
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 882046 as yet unmatched pairs. 25850 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,612,855
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 879662 as yet unmatched pairs. 23438 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:102,446,518
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 877379 as yet unmatched pairs. 21119 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:106,099,212
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 875832 as yet unmatched pairs. 19527 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:116,526,644
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 874594 as yet unmatched pairs. 18245 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:127,702,500
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 874081 as yet unmatched pairs. 17695 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:128,974,904
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 869513 as yet unmatched pairs. 13095 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:135,578,893
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 867764 as yet unmatched pairs. 11307 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:140,696,712
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 865260 as yet unmatched pairs. 8774 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:144,364,248
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 863249 as yet unmatched pairs. 6740 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:151,035,941
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 861066 as yet unmatched pairs. 4524 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:152,315,224
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 858839 as yet unmatched pairs. 2276 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 62s. Last read position: chr8:6,444,725
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 856217 as yet unmatched pairs. 50234 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr8:12,754,911
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 855680 as yet unmatched pairs. 49661 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:20,197,415
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 851809 as yet unmatched pairs. 45755 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:22,618,670
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 851234 as yet unmatched pairs. 45159 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:26,581,978
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 850369 as yet unmatched pairs. 44283 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:30,679,667
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 845274 as yet unmatched pairs. 39156 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:37,745,554
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 842508 as yet unmatched pairs. 36363 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr8:38,331,508
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 842242 as yet unmatched pairs. 36078 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr8:41,932,963
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 838070 as yet unmatched pairs. 31872 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:47,860,921
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 836799 as yet unmatched pairs. 30581 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:55,804,904
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 833820 as yet unmatched pairs. 27562 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:66,430,018
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 831573 as yet unmatched pairs. 25275 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:73,595,166
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 829925 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:96,299,721
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 827296 as yet unmatched pairs. 20927 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:114,030,093
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 825254 as yet unmatched pairs. 18838 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:125,787,191
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 823186 as yet unmatched pairs. 16729 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:132,804,614
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 821292 as yet unmatched pairs. 14793 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,575,069
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 818941 as yet unmatched pairs. 12394 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,821,831
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 815763 as yet unmatched pairs. 9192 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:144,080,065
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 814291 as yet unmatched pairs. 7702 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:144,393,358
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 811128 as yet unmatched pairs. 4511 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:144,625,626
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 807589 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:6,014,422
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 805465 as yet unmatched pairs. 50138 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:16,053,807
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 803323 as yet unmatched pairs. 47934 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:33,462,132
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 801369 as yet unmatched pairs. 45924 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr9:35,072,525
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 799014 as yet unmatched pairs. 43549 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:36,374,809
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 796847 as yet unmatched pairs. 41328 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:73,160,336
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 795459 as yet unmatched pairs. 39917 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:86,027,862
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 793045 as yet unmatched pairs. 37455 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:88,475,174
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 791250 as yet unmatched pairs. 35631 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:93,557,969
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 788486 as yet unmatched pairs. 32832 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:100,498,821
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 786520 as yet unmatched pairs. 30834 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:111,428,093
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 784553 as yet unmatched pairs. 28828 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:115,059,847
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 782018 as yet unmatched pairs. 26274 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:121,763,567
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 780015 as yet unmatched pairs. 24241 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:125,346,805
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 778023 as yet unmatched pairs. 22206 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:128,345,184
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 775601 as yet unmatched pairs. 19757 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:128,907,488
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 773392 as yet unmatched pairs. 17523 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:130,579,726
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 771210 as yet unmatched pairs. 15307 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:131,475,641
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 769793 as yet unmatched pairs. 13873 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:133,345,186
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 766929 as yet unmatched pairs. 10987 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:135,119,970
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 764634 as yet unmatched pairs. 8670 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,839
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 762536 as yet unmatched pairs. 6561 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:136,993,622
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 759405 as yet unmatched pairs. 3399 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:137,588,658
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 756636 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr10:5,453,256
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 754361 as yet unmatched pairs. 45519 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:12,172,815
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 752854 as yet unmatched pairs. 43969 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:18,539,239
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 750046 as yet unmatched pairs. 41120 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr10:26,670,882
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 747820 as yet unmatched pairs. 38864 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,265
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 749814 as yet unmatched pairs. 40825 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr10:32,305,787
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 745182 as yet unmatched pairs. 36187 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:43,119,557
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 742627 as yet unmatched pairs. 33598 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:49,967,763
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 740095 as yet unmatched pairs. 31044 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:67,906,907
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 738437 as yet unmatched pairs. 29353 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:70,099,996
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 738185 as yet unmatched pairs. 29080 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:73,249,208
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 734094 as yet unmatched pairs. 24965 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:78,013,772
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 731839 as yet unmatched pairs. 22682 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:87,152,080
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 729859 as yet unmatched pairs. 20673 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:92,606,649
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 728094 as yet unmatched pairs. 18889 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,491
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 726772 as yet unmatched pairs. 17535 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:100,950,710
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 723422 as yet unmatched pairs. 14164 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:102,380,299
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 721355 as yet unmatched pairs. 12074 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:109,915,011
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 718910 as yet unmatched pairs. 9603 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:117,005,022
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 716937 as yet unmatched pairs. 7608 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:120,866,719
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 714556 as yet unmatched pairs. 5208 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:128,105,391
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 712547 as yet unmatched pairs. 3150 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:132,404,852
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 710340 as yet unmatched pairs. 917 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr11:824,660
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 707948 as yet unmatched pairs. 81424 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:6,401,591
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 705736 as yet unmatched pairs. 79186 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:10,766,677
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 703146 as yet unmatched pairs. 76568 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:18,339,597
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 701333 as yet unmatched pairs. 74727 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:32,594,960
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 703662 as yet unmatched pairs. 77023 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:34,076,452
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 700404 as yet unmatched pairs. 73739 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:34,916,656
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 695567 as yet unmatched pairs. 68876 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:44,126,823
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 693772 as yet unmatched pairs. 67054 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:46,383,503
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 691023 as yet unmatched pairs. 64274 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:46,809,742
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 689319 as yet unmatched pairs. 62551 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr11:47,425,897
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 686989 as yet unmatched pairs. 60203 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr11:57,309,324
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 684284 as yet unmatched pairs. 57472 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:59,639,103
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 682063 as yet unmatched pairs. 55234 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:61,779,378
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 679616 as yet unmatched pairs. 52760 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,619
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 677634 as yet unmatched pairs. 50764 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,639,057
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 675826 as yet unmatched pairs. 48939 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:63,750,053
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 674891 as yet unmatched pairs. 47981 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:64,260,091
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 670412 as yet unmatched pairs. 43484 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:65,108,200
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 668193 as yet unmatched pairs. 41256 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,598,495
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 665521 as yet unmatched pairs. 38561 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:66,000,078
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 663069 as yet unmatched pairs. 36096 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:66,593,663
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 660478 as yet unmatched pairs. 33492 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:67,435,048
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 657938 as yet unmatched pairs. 30926 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,516
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 656273 as yet unmatched pairs. 29240 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,885
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 665721 as yet unmatched pairs. 38672 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:71,438,985
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 651319 as yet unmatched pairs. 24255 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:73,805,065
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 648518 as yet unmatched pairs. 21428 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:77,622,553
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 646279 as yet unmatched pairs. 19164 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:85,635,768
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 644657 as yet unmatched pairs. 17499 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:94,869,251
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 642444 as yet unmatched pairs. 15257 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:103,243,694
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 640443 as yet unmatched pairs. 13236 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:111,985,266
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 638148 as yet unmatched pairs. 10909 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:118,401,701
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 637548 as yet unmatched pairs. 10279 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:119,023,361
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 634460 as yet unmatched pairs. 7165 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,806
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 633076 as yet unmatched pairs. 5767 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:126,264,190
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 630376 as yet unmatched pairs. 3025 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:134,261,281
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 627596 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr12:2,864,325
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 626581 as yet unmatched pairs. 77309 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,581,666
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 623710 as yet unmatched pairs. 74416 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:6,921,654
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 621348 as yet unmatched pairs. 72029 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:9,427,455
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 619048 as yet unmatched pairs. 69718 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:14,475,878
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 617211 as yet unmatched pairs. 67846 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:25,225,675
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 615163 as yet unmatched pairs. 65783 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:42,313,101
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 613026 as yet unmatched pairs. 63628 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:44,816,034
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 619215 as yet unmatched pairs. 69787 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:47,798,206
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 608812 as yet unmatched pairs. 59358 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:49,046,708
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 606874 as yet unmatched pairs. 57403 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,470
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 605389 as yet unmatched pairs. 55909 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,999,673
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 603313 as yet unmatched pairs. 53822 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:53,159,640
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 600700 as yet unmatched pairs. 51190 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:53,483,872
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 598469 as yet unmatched pairs. 48944 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:54,343,279
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 597670 as yet unmatched pairs. 48123 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:55,823,501
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 594652 as yet unmatched pairs. 45095 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:56,282,880
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 594083 as yet unmatched pairs. 44514 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,688,030
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 590473 as yet unmatched pairs. 40894 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr12:57,106,553
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 588595 as yet unmatched pairs. 39001 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,498,447
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 587141 as yet unmatched pairs. 37530 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:62,384,086
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 583600 as yet unmatched pairs. 33966 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:68,733,452
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 581985 as yet unmatched pairs. 32333 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:72,273,180
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 579737 as yet unmatched pairs. 30066 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:89,350,665
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 578370 as yet unmatched pairs. 28675 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:96,917,727
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 575950 as yet unmatched pairs. 26245 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:103,934,179
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 574613 as yet unmatched pairs. 24895 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:108,788,317
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 571613 as yet unmatched pairs. 21877 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:110,742,820
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 569373 as yet unmatched pairs. 19607 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:112,408,418
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 567592 as yet unmatched pairs. 17798 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:118,036,365
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 564940 as yet unmatched pairs. 15112 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:120,496,133
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 562674 as yet unmatched pairs. 12820 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:122,208,437
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 560089 as yet unmatched pairs. 10218 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:123,597,419
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 557740 as yet unmatched pairs. 7855 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:124,968,496
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 555598 as yet unmatched pairs. 5694 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:132,104,965
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 553034 as yet unmatched pairs. 3112 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:132,825,713
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 550308 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr13:21,140,888
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 549755 as yet unmatched pairs. 27655 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr13:25,287,242
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 546490 as yet unmatched pairs. 24370 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr13:31,137,470
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 544910 as yet unmatched pairs. 22764 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr13:36,894,467
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 542147 as yet unmatched pairs. 19986 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr13:45,072,221
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 540235 as yet unmatched pairs. 18054 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr13:46,359,508
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 540002 as yet unmatched pairs. 17816 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr13:52,154,116
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 536270 as yet unmatched pairs. 14068 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:75,530,148
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 534544 as yet unmatched pairs. 12315 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:97,976,732
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 535513 as yet unmatched pairs. 13254 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:99,982,311
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 530321 as yet unmatched pairs. 8041 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:109,783,627
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 529469 as yet unmatched pairs. 7153 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:110,901,616
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 524113 as yet unmatched pairs. 1778 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:20,457,316
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 523564 as yet unmatched pairs. 45291 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:21,408,466
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 519697 as yet unmatched pairs. 41405 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr14:22,924,035
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 518188 as yet unmatched pairs. 39886 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:23,531,519
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 514953 as yet unmatched pairs. 36638 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:29,927,384
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 512813 as yet unmatched pairs. 34492 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:35,123,596
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 510825 as yet unmatched pairs. 32483 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,613
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 514275 as yet unmatched pairs. 35903 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,671
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 514031 as yet unmatched pairs. 35630 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:54,775,030
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 505709 as yet unmatched pairs. 27284 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:58,427,046
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 503630 as yet unmatched pairs. 25183 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr14:64,130,233
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 501907 as yet unmatched pairs. 23445 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr14:67,769,602
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 499526 as yet unmatched pairs. 21053 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:72,998,006
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 497339 as yet unmatched pairs. 18842 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:75,063,469
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 495080 as yet unmatched pairs. 16570 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:85,623,212
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 492843 as yet unmatched pairs. 14317 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:93,183,983
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 490731 as yet unmatched pairs. 12178 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:99,175,522
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 489342 as yet unmatched pairs. 10771 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:101,988,754
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 486842 as yet unmatched pairs. 8220 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:102,084,977
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 485260 as yet unmatched pairs. 6626 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:103,679,462
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 482031 as yet unmatched pairs. 3389 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,492,075
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 478973 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr15:28,612,083
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 477011 as yet unmatched pairs. 38184 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:34,527,605
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 475288 as yet unmatched pairs. 36446 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:40,899,874
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 473337 as yet unmatched pairs. 34478 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,846,758
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 471222 as yet unmatched pairs. 32356 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:43,522,616
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 469033 as yet unmatched pairs. 30152 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:43,851,116
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 467148 as yet unmatched pairs. 28260 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:48,878,640
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 465213 as yet unmatched pairs. 26310 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:56,098,263
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 463211 as yet unmatched pairs. 24297 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr15:57,904,922
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 461015 as yet unmatched pairs. 22082 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:64,081,110
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 459461 as yet unmatched pairs. 20508 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr15:66,499,603
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 457619 as yet unmatched pairs. 18649 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:70,664,683
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 454395 as yet unmatched pairs. 15412 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:73,926,772
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 452529 as yet unmatched pairs. 13530 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:75,389,711
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 450167 as yet unmatched pairs. 11161 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:78,292,705
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 447848 as yet unmatched pairs. 8816 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:84,512,150
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 445797 as yet unmatched pairs. 6744 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:89,601,886
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 443781 as yet unmatched pairs. 4716 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:90,981,876
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 441741 as yet unmatched pairs. 2669 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:54,049
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 439391 as yet unmatched pairs. 76926 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:666,112
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 436476 as yet unmatched pairs. 74000 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:1,350,920
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 433818 as yet unmatched pairs. 71330 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,000,245
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 431099 as yet unmatched pairs. 68603 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,234,681
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 427708 as yet unmatched pairs. 65204 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,074
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 426508 as yet unmatched pairs. 63995 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:3,590,698
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 423003 as yet unmatched pairs. 60479 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:4,822,864
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 420752 as yet unmatched pairs. 58213 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:11,838,104
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 418621 as yet unmatched pairs. 56070 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:14,929,436
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 416826 as yet unmatched pairs. 54269 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,281,253
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 415210 as yet unmatched pairs. 52651 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:18,340,398
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 414954 as yet unmatched pairs. 52393 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,793,335
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 414415 as yet unmatched pairs. 51852 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,456,330
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 412111 as yet unmatched pairs. 49539 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr16:22,493,585
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 410837 as yet unmatched pairs. 48264 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:23,836,339
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 411337 as yet unmatched pairs. 48755 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:27,492,377
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 407379 as yet unmatched pairs. 44780 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:28,823,323
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 406437 as yet unmatched pairs. 43832 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,921
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 404306 as yet unmatched pairs. 41698 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:29,986,880
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 402006 as yet unmatched pairs. 39389 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:30,369,271
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 400374 as yet unmatched pairs. 37753 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:30,768,385
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 398240 as yet unmatched pairs. 35610 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:31,183,976
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 406130 as yet unmatched pairs. 43492 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,389
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 400387 as yet unmatched pairs. 37742 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:48,562,140
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 391345 as yet unmatched pairs. 28690 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:55,810,588
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 391732 as yet unmatched pairs. 29064 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:57,771,614
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 387449 as yet unmatched pairs. 24768 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:66,813,586
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 385790 as yet unmatched pairs. 23095 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:67,877,787
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 382601 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:69,659,762
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 380104 as yet unmatched pairs. 17391 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:70,571,685
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 378273 as yet unmatched pairs. 15553 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:74,451,681
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 375808 as yet unmatched pairs. 13079 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:75,612,345
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 373547 as yet unmatched pairs. 10807 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr16:84,988,762
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 371600 as yet unmatched pairs. 8846 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:88,699,622
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 369526 as yet unmatched pairs. 6759 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr16:89,291,013
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 366964 as yet unmatched pairs. 4194 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:89,908,463
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 364216 as yet unmatched pairs. 1435 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr17:1,354,333
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 366162 as yet unmatched pairs. 81996 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:1,661,921
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 359711 as yet unmatched pairs. 75541 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:2,689,875
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 356933 as yet unmatched pairs. 72755 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:4,720,435
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 355024 as yet unmatched pairs. 70837 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:6,450,055
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 352652 as yet unmatched pairs. 68460 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,314,145
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 350060 as yet unmatched pairs. 65863 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,639
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 348569 as yet unmatched pairs. 64370 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:7,893,374
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 346159 as yet unmatched pairs. 61956 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:8,443,319
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 343521 as yet unmatched pairs. 59314 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:16,146,376
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 341176 as yet unmatched pairs. 56957 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:17,816,460
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 339196 as yet unmatched pairs. 54966 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:19,571,477
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 336475 as yet unmatched pairs. 52237 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:28,616,722
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 334629 as yet unmatched pairs. 50378 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr17:29,286,978
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 332464 as yet unmatched pairs. 48204 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:31,937,476
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 330610 as yet unmatched pairs. 46328 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:36,486,743
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 328094 as yet unmatched pairs. 43807 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,934
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 325877 as yet unmatched pairs. 41582 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 123s. Last read position: chr17:42,021,604
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 323884 as yet unmatched pairs. 39576 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:44,211,628
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 321730 as yet unmatched pairs. 37412 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr17:47,050,236
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 319631 as yet unmatched pairs. 35310 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:48,999,133
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 319351 as yet unmatched pairs. 35021 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,385,123
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 315207 as yet unmatched pairs. 30864 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:57,979,212
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 312833 as yet unmatched pairs. 28484 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,634
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 314623 as yet unmatched pairs. 30258 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:59,731,497
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 309187 as yet unmatched pairs. 24815 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:63,699,301
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 306560 as yet unmatched pairs. 22178 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:67,218,643
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 304198 as yet unmatched pairs. 19807 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:73,209,543
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 302143 as yet unmatched pairs. 17749 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr17:75,569,080
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 299615 as yet unmatched pairs. 15207 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:76,737,091
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 297957 as yet unmatched pairs. 13544 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr17:80,010,531
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 295325 as yet unmatched pairs. 10898 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:81,459,505
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 292629 as yet unmatched pairs. 8189 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 3s. Last read position: chr17:81,868,927
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 290549 as yet unmatched pairs. 6103 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr17:82,084,579
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 287861 as yet unmatched pairs. 3402 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:83,005,169
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 284600 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr18:3,814,251
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 282734 as yet unmatched pairs. 16253 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr18:12,329,145
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 280261 as yet unmatched pairs. 13771 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr18:24,181,219
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 278138 as yet unmatched pairs. 11640 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr18:45,063,600
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 276120 as yet unmatched pairs. 9602 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr18:50,269,660
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 274424 as yet unmatched pairs. 7894 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr18:56,789,893
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 271982 as yet unmatched pairs. 5443 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr18:62,523,382
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 269764 as yet unmatched pairs. 3213 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr18:76,947,485
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 267401 as yet unmatched pairs. 832 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr19:652,243
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 265415 as yet unmatched pairs. 114292 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr19:1,105,773
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 263140 as yet unmatched pairs. 112010 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,145
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 262695 as yet unmatched pairs. 111562 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 2s. Last read position: chr19:1,979,923
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 256814 as yet unmatched pairs. 105676 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:2,431,782
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 254317 as yet unmatched pairs. 103176 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:3,613,117
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 251056 as yet unmatched pairs. 99909 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:4,523,919
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 248351 as yet unmatched pairs. 97194 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:5,229,599
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 246364 as yet unmatched pairs. 95205 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:5,917,934
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 243634 as yet unmatched pairs. 92474 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:7,519,520
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 240880 as yet unmatched pairs. 89714 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,485,827
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 240087 as yet unmatched pairs. 88918 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,159,677
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 236488 as yet unmatched pairs. 85315 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:10,682,573
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 234202 as yet unmatched pairs. 83022 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:11,105,244
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 231192 as yet unmatched pairs. 80011 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,701,817
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 228978 as yet unmatched pairs. 77792 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:13,104,972
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 226214 as yet unmatched pairs. 75025 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr19:14,161,317
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 223967 as yet unmatched pairs. 72777 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr19:15,239,391
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 221751 as yet unmatched pairs. 70557 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:15,372,923
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 218923 as yet unmatched pairs. 67725 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,460
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 216310 as yet unmatched pairs. 65111 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:17,998,270
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 214165 as yet unmatched pairs. 62959 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:18,599,631
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 212071 as yet unmatched pairs. 60861 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:19,498,482
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 208249 as yet unmatched pairs. 57032 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:32,602,039
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 206024 as yet unmatched pairs. 54797 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:35,270,515
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 203631 as yet unmatched pairs. 52396 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:36,141,137
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 200706 as yet unmatched pairs. 49465 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:38,845,692
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 199167 as yet unmatched pairs. 47918 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:39,474,249
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 196323 as yet unmatched pairs. 45074 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:40,365,882
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 194860 as yet unmatched pairs. 43603 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,304,078
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 191939 as yet unmatched pairs. 40675 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:42,248,804
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 189065 as yet unmatched pairs. 37800 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr19:42,300,263
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 187474 as yet unmatched pairs. 36205 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:44,992,650
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 184400 as yet unmatched pairs. 33119 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr19:45,855,678
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 181255 as yet unmatched pairs. 29967 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:47,067,305
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 179307 as yet unmatched pairs. 28017 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,389,560
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 176840 as yet unmatched pairs. 25549 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr19:49,107,686
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 174593 as yet unmatched pairs. 23290 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,526,007
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 172942 as yet unmatched pairs. 21629 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:49,691,760
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 168723 as yet unmatched pairs. 17404 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,932,736
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 168953 as yet unmatched pairs. 17632 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:52,190,123
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 165339 as yet unmatched pairs. 14015 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr19:54,461,511
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 161261 as yet unmatched pairs. 9928 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:55,614,733
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 158529 as yet unmatched pairs. 7193 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:56,816,795
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 157122 as yet unmatched pairs. 5779 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:58,243,966
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 154097 as yet unmatched pairs. 2750 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr20:298,690
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 151456 as yet unmatched pairs. 34546 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:2,658,030
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 149054 as yet unmatched pairs. 32139 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr20:4,857,028
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 146250 as yet unmatched pairs. 29327 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:17,641,812
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 144135 as yet unmatched pairs. 27209 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr20:21,513,484
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 143810 as yet unmatched pairs. 26876 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr20:32,434,642
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 139833 as yet unmatched pairs. 22897 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr20:34,742,979
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 137561 as yet unmatched pairs. 20623 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr20:36,431,793
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 135123 as yet unmatched pairs. 18184 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:40,269,680
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 132568 as yet unmatched pairs. 15621 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr20:44,054,513
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 131318 as yet unmatched pairs. 14370 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr20:46,373,510
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 128243 as yet unmatched pairs. 11293 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr20:49,839,545
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 126007 as yet unmatched pairs. 9052 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr20:57,393,278
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 123730 as yet unmatched pairs. 6767 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr20:62,197,900
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 120892 as yet unmatched pairs. 3924 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:63,661,412
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 118505 as yet unmatched pairs. 1537 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr21:7,438,722
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 116381 as yet unmatched pairs. 22572 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,008
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 115072 as yet unmatched pairs. 21263 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,252,299
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 113184 as yet unmatched pairs. 19361 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,318
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 112203 as yet unmatched pairs. 18379 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,119
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 111764 as yet unmatched pairs. 17936 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,438,350
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 110792 as yet unmatched pairs. 16959 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,108
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 109218 as yet unmatched pairs. 15385 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr21:14,226,911
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 110101 as yet unmatched pairs. 16266 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr21:29,064,991
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 107777 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,369
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 103595 as yet unmatched pairs. 9753 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:37,165,911
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 101234 as yet unmatched pairs. 7386 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr21:43,095,494
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 98960 as yet unmatched pairs. 5107 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:44,973,205
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 96806 as yet unmatched pairs. 2951 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:17,138,295
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 94088 as yet unmatched pairs. 37269 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr22:19,968,751
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 91287 as yet unmatched pairs. 34468 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr22:21,621,659
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 89075 as yet unmatched pairs. 32248 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr22:23,833,608
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 86788 as yet unmatched pairs. 29961 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr22:28,099,010
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 84441 as yet unmatched pairs. 27613 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,519
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 86194 as yet unmatched pairs. 29363 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr22:30,428,465
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 79815 as yet unmatched pairs. 22983 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:32,805,426
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 77197 as yet unmatched pairs. 20363 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,756
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 75281 as yet unmatched pairs. 18444 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:38,506,040
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 72811 as yet unmatched pairs. 15974 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:40,265,512
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 69983 as yet unmatched pairs. 13144 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:41,358,249
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 67482 as yet unmatched pairs. 10642 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:42,161,243
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 65475 as yet unmatched pairs. 8635 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:45,327,933
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 62863 as yet unmatched pairs. 6023 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:50,218,074
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 60242 as yet unmatched pairs. 3398 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr22:50,523,043
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 58140 as yet unmatched pairs. 1293 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:2,723,312
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 58767 as yet unmatched pairs. 43325 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:18,941,648
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 52684 as yet unmatched pairs. 37229 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:37,453,378
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 50462 as yet unmatched pairs. 35005 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:41,341,595
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 48534 as yet unmatched pairs. 33077 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chrX:47,214,830
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 46603 as yet unmatched pairs. 31146 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrX:48,902,780
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 44385 as yet unmatched pairs. 28927 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:51,896,759
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 43212 as yet unmatched pairs. 27754 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chrX:53,381,023
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 40133 as yet unmatched pairs. 24675 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:54,249,356
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 37464 as yet unmatched pairs. 22006 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:70,289,255
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 35402 as yet unmatched pairs. 19943 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:72,130,125
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 33175 as yet unmatched pairs. 17716 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:77,826,742
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 31258 as yet unmatched pairs. 15798 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chrX:100,635,609
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 29501 as yet unmatched pairs. 14038 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:115,649,435
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 27456 as yet unmatched pairs. 11993 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:124,963,572
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 25304 as yet unmatched pairs. 9841 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chrX:136,687,931
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 23140 as yet unmatched pairs. 7677 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:153,592,672
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 21259 as yet unmatched pairs. 5795 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,875
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 19618 as yet unmatched pairs. 4154 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,533,054
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 16456 as yet unmatched pairs. 992 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrM:8,391
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 14857 as yet unmatched pairs. 980 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: GL000220.1:112,597
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 13605 as yet unmatched pairs. 3730 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,498
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 10078 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 0s. Last read position: GL000220.1:156,922
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 10057 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,701
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 9877 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,639
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 9638 as yet unmatched pairs. 9588 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,178
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 4096 as yet unmatched pairs. 4046 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: KI270733.1:173,514
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 2124 as yet unmatched pairs. 2074 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,489
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 95 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 636667083 records. 0 pairs never matched.
INFO 2026-06-08 08:50:27 MarkDuplicates After buildSortedReadEndLists freeMemory: 204135800; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:50:27 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:50:32 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:50:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:51:25 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 08:51:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,661
INFO 2026-06-08 08:51:25 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 08:51:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,186
INFO 2026-06-08 08:51:42 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:51:43 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:52:46 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:52:55 MarkDuplicates After generateDuplicateIndexes freeMemory: 25489532256; totalMemory: 41439723520; maxMemory: 63585648640
INFO 2026-06-08 08:52:55 MarkDuplicates Marking 253859458 records as duplicates.
INFO 2026-06-08 08:52:55 MarkDuplicates Found 15293178 optical duplicate clusters.
INFO 2026-06-08 08:52:55 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:53:12 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,081,509
INFO 2026-06-08 08:53:30 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:42,851,601
INFO 2026-06-08 08:53:49 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 18s. Last read position: chr1:99,993,557
INFO 2026-06-08 08:54:06 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:11s. Time for last 10,000,000: 17s. Last read position: chr1:150,552,233
INFO 2026-06-08 08:54:24 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:29s. Time for last 10,000,000: 18s. Last read position: chr1:171,557,647
INFO 2026-06-08 08:54:43 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 18s. Last read position: chr1:222,627,745
INFO 2026-06-08 08:55:00 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 17s. Last read position: chr2:27,232,044
INFO 2026-06-08 08:55:18 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 17s. Last read position: chr2:55,234,840
INFO 2026-06-08 08:55:36 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 17s. Last read position: chr2:108,766,966
INFO 2026-06-08 08:55:54 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 18s. Last read position: chr2:183,021,582
INFO 2026-06-08 08:56:12 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 17s. Last read position: chr2:216,148,265
INFO 2026-06-08 08:56:30 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 17s. Last read position: chr3:14,481,759
INFO 2026-06-08 08:56:48 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 18s. Last read position: chr3:119,826,514
INFO 2026-06-08 08:57:06 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 17s. Last read position: chr3:186,790,143
INFO 2026-06-08 08:57:25 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 18s. Last read position: chr4:56,459,430
INFO 2026-06-08 08:57:43 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 18s. Last read position: chr4:186,620,898
INFO 2026-06-08 08:58:02 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 18s. Last read position: chr5:73,498,508
INFO 2026-06-08 08:58:20 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 18s. Last read position: chr5:141,421,873
INFO 2026-06-08 08:58:39 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 18s. Last read position: chr6:311,891
INFO 2026-06-08 08:58:57 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 18s. Last read position: chr6:31,644,179
INFO 2026-06-08 08:59:16 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:21s. Time for last 10,000,000: 19s. Last read position: chr6:80,168,987
INFO 2026-06-08 08:59:36 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:40s. Time for last 10,000,000: 19s. Last read position: chr6:168,308,176
INFO 2026-06-08 08:59:54 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 18s. Last read position: chr7:70,771,570
INFO 2026-06-08 09:00:13 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:18s. Time for last 10,000,000: 19s. Last read position: chr7:106,099,212
INFO 2026-06-08 09:00:33 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 19s. Last read position: chr8:12,754,911
INFO 2026-06-08 09:00:51 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 18s. Last read position: chr8:66,430,018
INFO 2026-06-08 09:01:10 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 18s. Last read position: chr8:144,625,626
INFO 2026-06-08 09:01:29 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:34s. Time for last 10,000,000: 18s. Last read position: chr9:100,498,821
INFO 2026-06-08 09:01:47 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 18s. Last read position: chr9:135,119,970
INFO 2026-06-08 09:02:06 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 18s. Last read position: chr10:43,119,557
INFO 2026-06-08 09:02:25 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 18s. Last read position: chr10:102,380,299
INFO 2026-06-08 09:02:43 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 18s. Last read position: chr11:32,594,960
INFO 2026-06-08 09:03:02 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 18s. Last read position: chr11:61,964,619
INFO 2026-06-08 09:03:20 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 18s. Last read position: chr11:69,643,885
INFO 2026-06-08 09:03:40 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:44s. Time for last 10,000,000: 19s. Last read position: chr11:123,057,806
INFO 2026-06-08 09:03:58 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 18s. Last read position: chr12:44,816,034
INFO 2026-06-08 09:04:17 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 18s. Last read position: chr12:56,688,030
INFO 2026-06-08 09:04:37 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 19s. Last read position: chr12:110,742,820
INFO 2026-06-08 09:04:56 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 18s. Last read position: chr13:25,287,242
INFO 2026-06-08 09:05:15 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:19s. Time for last 10,000,000: 18s. Last read position: chr13:110,901,616
INFO 2026-06-08 09:05:33 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 18s. Last read position: chr14:58,427,046
INFO 2026-06-08 09:05:52 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 18s. Last read position: chr14:103,679,462
INFO 2026-06-08 09:06:11 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 19s. Last read position: chr15:57,904,922
INFO 2026-06-08 09:06:30 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:35s. Time for last 10,000,000: 19s. Last read position: chr16:54,049
INFO 2026-06-08 09:06:49 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:54s. Time for last 10,000,000: 18s. Last read position: chr16:16,281,253
INFO 2026-06-08 09:07:08 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:12s. Time for last 10,000,000: 18s. Last read position: chr16:30,369,271
INFO 2026-06-08 09:07:27 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 19s. Last read position: chr16:70,571,685
INFO 2026-06-08 09:07:46 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:51s. Time for last 10,000,000: 19s. Last read position: chr17:4,720,435
INFO 2026-06-08 09:08:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 19s. Last read position: chr17:29,286,978
INFO 2026-06-08 09:08:27 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 20s. Last read position: chr17:59,661,634
INFO 2026-06-08 09:08:47 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 20s. Last read position: chr17:82,084,579
INFO 2026-06-08 09:09:07 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 19s. Last read position: chr19:652,243
INFO 2026-06-08 09:09:26 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 18s. Last read position: chr19:8,485,827
INFO 2026-06-08 09:09:44 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 18s. Last read position: chr19:17,998,270
INFO 2026-06-08 09:10:03 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 18s. Last read position: chr19:42,248,804
INFO 2026-06-08 09:10:22 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:17:27s. Time for last 10,000,000: 18s. Last read position: chr19:52,190,123
INFO 2026-06-08 09:10:41 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:46s. Time for last 10,000,000: 18s. Last read position: chr20:32,434,642
INFO 2026-06-08 09:11:00 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:18:04s. Time for last 10,000,000: 18s. Last read position: chr21:7,438,722
INFO 2026-06-08 09:11:16 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:18:21s. Time for last 10,000,000: 16s. Last read position: chr21:37,165,911
INFO 2026-06-08 09:11:35 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:18:40s. Time for last 10,000,000: 18s. Last read position: chr22:32,805,426
INFO 2026-06-08 09:11:54 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:58s. Time for last 10,000,000: 18s. Last read position: chrX:18,941,648
INFO 2026-06-08 09:12:12 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:19:17s. Time for last 10,000,000: 18s. Last read position: chrX:77,826,742
INFO 2026-06-08 09:12:31 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:19:35s. Time for last 10,000,000: 18s. Last read position: GL000220.1:116,498
INFO 2026-06-08 09:12:49 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:12:49 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:12:49 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:12:50 MarkDuplicates Before output close freeMemory: 201567432; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:50 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:12:50 MarkDuplicates After output close freeMemory: 104160208; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:12:50 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.68 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory