File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/bde767dcddbb3f67752af5aebab15f/.command.log
Size
726 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (KG1_FFPE_01_RNA_0003_B23LG7FLT4_3)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/2691cdf6d3663abed8c8df65ba6086/KG1_FFPE_01_RNA_0003_B23LG7FLT4_3.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/bde767dcddbb3f67752af5aebab15f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/bde767dcddbb3f67752af5aebab15f/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  KG1_FFPE_01_RNA_0003_B23LG7FLT4_3: vaf_p90=1.000000 -> CLEAN

Output saved to: KG1_FFPE_01_RNA_0003_B23LG7FLT4_3.predictions.csv
Summary: 0/1 samples flagged as contaminated