Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/ac8b1eaf7821ffd60f3b23b69cdca6/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/4eb940926f0a6503fb8d3288505155/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/4eb940926f0a6503fb8d3288505155/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/2019f56f93e4025d3ff4dd0e34946d/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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