Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/51cdcc9b68cd0f06418516e0324a4a/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/22e6d15fbd7f99e647025d8a951cc7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/22e6d15fbd7f99e647025d8a951cc7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/c82e10e1f775b5e770785b1bfc3423/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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