.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (A549_FFPE_01_RNA_0001_B23LG7FLT4_3)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/25fca29aec18c02b4245b5b3de458f/.command.sh
Size: 499 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (A549_FFPE_01_RNA_0001_B23LG7FLT4_3)
Attempt

Content

#!/bin/bash -euo pipefail
rseqc_to_multiqc.py \
    --bam-stat A549_FFPE_01_RNA_0001_B23LG7FLT4_3.bam_stat.txt \
    --infer-experiment A549_FFPE_01_RNA_0001_B23LG7FLT4_3.infer_experiment.txt \
    --sample-id A549_FFPE_01_RNA_0001_B23LG7FLT4_3 \
    -o A549_FFPE_01_RNA_0001_B23LG7FLT4_3_rseqc_extra_mqc.tsv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    rseqc_to_multiqc: 1.0.0
END_VERSIONS