[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz
                             22Rv1_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (83.3% mapped)             
[progress] 2M reads processed (83.4% mapped)             
[progress] 3M reads processed (83.3% mapped)             
[progress] 4M reads processed (83.4% mapped)             
[progress] 5M reads processed (83.4% mapped)             
[progress] 6M reads processed (83.3% mapped)             
[progress] 7M reads processed (83.3% mapped)             
[progress] 8M reads processed (83.3% mapped)             
[progress] 9M reads processed (83.3% mapped)             
[progress] 10M reads processed (83.3% mapped)             
[progress] 11M reads processed (83.3% mapped)             
[progress] 12M reads processed (83.3% mapped)             
[progress] 13M reads processed (83.3% mapped)             
[progress] 14M reads processed (83.3% mapped)              done
[quant] processed 14,388,080 reads, 11,988,865 reads pseudoaligned
[quant] estimated average fragment length: 102.1
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,255 rounds