Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/e19468f3362601f39067881abf5609/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/e9ee5682b5092b7a1f743c72704cca/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/e9ee5682b5092b7a1f743c72704cca/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-f79a17a0-988d-46c3-a0fc-cc7f26b06d9c/2f/783d5e3fc4bb0e4fc378bb3e8b5e61/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)


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ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 0
Arriba filter: 0 rows -> 0 PASS; wrote BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt