Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5a04687f95d6d319ced38699e780ff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5a04687f95d6d319ced38699e780ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/6c1195c1d972f6f1c8625185166f93/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/6c1195c1d972f6f1c8625185166f93/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory