-ctat genome lib [/tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.fkUPKdCBFy/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary
-sample contains 97538734 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir -J /tmp/nxf.fkUPKdCBFy/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.fkUPKdCBFy/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes
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[1890000], rate=109990.30/min -building interval tree based on /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes
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[1880000], rate=101713.26/min -building interval tree based on /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes
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[1870000], rate=92574.26/min
[1880000], rate=92459.02/min -building interval tree based on /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes
[10000], rate=75000.00/min
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[1750000], rate=92511.01/min
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[1840000], rate=92307.69/min
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[1860000], rate=91776.32/min
[1870000], rate=91816.69/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir --filt_file /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
0.00 reads per min processed...
12000000.00 reads per min processed...
18000000.00 reads per min processed...
12000000.00 reads per min processed...
15000000.00 reads per min processed...
18000000.00 reads per min processed...
14000000.00 reads per min processed...
12000000.00 reads per min processed...
13500000.00 reads per min processed...
10000000.00 reads per min processed...
9428571.43 reads per min processed...
9000000.00 reads per min processed...
9750000.00 reads per min processed...
8400000.00 reads per min processed...
8181818.18 reads per min processed...
8000000.00 reads per min processed...
7846153.85 reads per min processed...
8307692.31 reads per min processed...
7600000.00 reads per min processed...
7500000.00 reads per min processed...
7411764.71 reads per min processed...
7333333.33 reads per min processed...
7263157.89 reads per min processed...
7200000.00 reads per min processed...
7142857.14 reads per min processed...
7090909.09 reads per min processed...
7043478.26 reads per min processed...
7000000.00 reads per min processed...
6960000.00 reads per min processed...
6923076.92 reads per min processed...
6888888.89 reads per min processed...
6857142.86 reads per min processed...
6827586.21 reads per min processed...
7034482.76 reads per min processed...
7000000.00 reads per min processed...
6967741.94 reads per min processed...
6937500.00 reads per min processed...
6909090.91 reads per min processed...
7090909.09 reads per min processed...
7058823.53 reads per min processed...
7028571.43 reads per min processed...
7200000.00 reads per min processed...
7371428.57 reads per min processed...
7333333.33 reads per min processed...
7500000.00 reads per min processed...
7459459.46 reads per min processed...
7421052.63 reads per min processed...
7578947.37 reads per min processed...
7538461.54 reads per min processed...
7500000.00 reads per min processed...
7463414.63 reads per min processed...
7428571.43 reads per min processed...
7395348.84 reads per min processed...
7363636.36 reads per min processed...
7333333.33 reads per min processed...
7304347.83 reads per min processed...
7276595.74 reads per min processed...
7250000.00 reads per min processed...
7375000.00 reads per min processed...
7200000.00 reads per min processed...
7176470.59 reads per min processed...
7153846.15 reads per min processed...
7132075.47 reads per min processed...
7111111.11 reads per min processed...
7090909.09 reads per min processed...
7071428.57 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.fkUPKdCBFy/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -109503.927209
EM: Round [1] log likelihood: -109265.968535
EM: Round [2] log likelihood: -109169.896573
EM: Round [3] log likelihood: -109123.682550
EM: Round [4] log likelihood: -109099.421214
EM: Round [5] log likelihood: -109085.893460
EM: Round [6] log likelihood: -109077.942532
EM: Round [7] log likelihood: -109073.032288
EM: Round [8] log likelihood: -109069.857741
EM: Round [9] log likelihood: -109067.719254
EM: Round [10] log likelihood: -109066.225912
EM: Round [11] log likelihood: -109065.150187
EM: Round [12] log likelihood: -109064.354398
EM: Round [13] log likelihood: -109063.752164
EM: Round [14] log likelihood: -109063.287465
EM: Round [15] log likelihood: -109062.922862
EM: Round [16] log likelihood: -109062.632641
EM: Round [17] log likelihood: -109062.398710
EM: Round [18] log likelihood: -109062.208057
EM: Round [19] log likelihood: -109062.051144
EM: Round [20] log likelihood: -109061.920860
EM: Round [21] log likelihood: -109061.811823
EM: Round [22] log likelihood: -109061.719905
EM: Round [23] log likelihood: -109061.641903
EM: Round [24] log likelihood: -109061.575305
EM: Round [25] log likelihood: -109061.518123
EM: Round [26] log likelihood: -109061.468766
EM: Round [27] log likelihood: -109061.425954
EM: Round [28] log likelihood: -109061.388651
EM: Round [29] log likelihood: -109061.356007
EM: Round [30] log likelihood: -109061.327325
EM: Round [31] log likelihood: -109061.302029
EM: Round [32] log likelihood: -109061.279639
EM: Round [33] log likelihood: -109061.259754
EM: Round [34] log likelihood: -109061.242036
EM: Round [35] log likelihood: -109061.226202
EM: Round [36] log likelihood: -109061.212011
EM: Round [37] log likelihood: -109061.199256
EM: Round [38] log likelihood: -109061.187762
EM: Round [39] log likelihood: -109061.177378
EM: Round [40] log likelihood: -109061.167975
EM: Round [41] log likelihood: -109061.159440
EM: Round [42] log likelihood: -109061.151676
EM: Round [43] log likelihood: -109061.144599
EM: Round [44] log likelihood: -109061.138134
EM: Round [45] log likelihood: -109061.132218
EM: Round [46] log likelihood: -109061.126793
EM: Round [47] log likelihood: -109061.121810
EM: Round [48] log likelihood: -109061.117226
EM: Round [49] log likelihood: -109061.113000
EM: Round [50] log likelihood: -109061.109099
EM: Round [51] log likelihood: -109061.105493
EM: Round [52] log likelihood: -109061.102154
EM: Round [53] log likelihood: -109061.099058
EM: Round [54] log likelihood: -109061.096184
EM: Round [55] log likelihood: -109061.093512
EM: Round [56] log likelihood: -109061.091024
EM: Round [57] log likelihood: -109061.088706
EM: Round [58] log likelihood: -109061.086543
EM: Round [59] log likelihood: -109061.084523
EM: Round [60] log likelihood: -109061.082634
EM: Round [61] log likelihood: -109061.080865
EM: Round [62] log likelihood: -109061.079208
EM: Round [63] log likelihood: -109061.077654
EM: Round [64] log likelihood: -109061.076194
EM: Round [65] log likelihood: -109061.074823
EM: Round [66] log likelihood: -109061.073533
EM: Round [67] log likelihood: -109061.072320
EM: Round [68] log likelihood: -109061.071176
EM: Round [69] log likelihood: -109061.070098
EM: Round [70] log likelihood: -109061.069081
EM: Round [71] log likelihood: -109061.068121
EM: Round [72] log likelihood: -109061.067213
EM: Round [73] log likelihood: -109061.066356
EM: Round [74] log likelihood: -109061.065544
EM: Round [75] log likelihood: -109061.064776
EM: Round [76] log likelihood: -109061.064048
EM: Round [77] log likelihood: -109061.063358
EM: Round [78] log likelihood: -109061.062704
EM: Round [79] log likelihood: -109061.062083
EM: Round [80] log likelihood: -109061.061493
EM: Round [81] log likelihood: -109061.060934
EM: Round [82] log likelihood: -109061.060401
EM: Round [83] log likelihood: -109061.059895
EM: Round [84] log likelihood: -109061.059414
EM: Round [85] log likelihood: -109061.058956
EM: Round [86] log likelihood: -109061.058519
EM: Round [87] log likelihood: -109061.058103
EM: Round [88] log likelihood: -109061.057707
EM: Round [89] log likelihood: -109061.057329
EM: Round [90] log likelihood: -109061.056969
EM: Round [91] log likelihood: -109061.056625
EM: Round [92] log likelihood: -109061.056297
EM: Round [93] log likelihood: -109061.055983
EM: Round [94] log likelihood: -109061.055684
EM: Round [95] log likelihood: -109061.055397
EM: Round [96] log likelihood: -109061.055124
EM: Round [97] log likelihood: -109061.054862
EM: Round [98] log likelihood: -109061.054612
EM: Round [99] log likelihood: -109061.054372
EM: Round [100] log likelihood: -109061.054142
EM: Round [101] log likelihood: -109061.053923
EM: Round [102] log likelihood: -109061.053712
EM: Round [103] log likelihood: -109061.053510
EM: Round [104] log likelihood: -109061.053317
EM: Round [105] log likelihood: -109061.053131
EM: Round [106] log likelihood: -109061.052953
EM: Round [107] log likelihood: -109061.052783
EM: Round [108] log likelihood: -109061.052619
EM: Round [109] log likelihood: -109061.052462
EM: Round [110] log likelihood: -109061.052311
EM: Round [111] log likelihood: -109061.052166
EM: Round [112] log likelihood: -109061.052026
EM: Round [113] log likelihood: -109061.051892
EM: Round [114] log likelihood: -109061.051763
EM: Round [115] log likelihood: -109061.051640
EM: Round [116] log likelihood: -109061.051520
EM: Round [117] log likelihood: -109061.051406
EM: Round [118] log likelihood: -109061.051295
EM: Round [119] log likelihood: -109061.051189
EM: Round [120] log likelihood: -109061.051087
EM: Round [121] log likelihood: -109061.050988
EM: Stopping iterations at round 121 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -108943.858974
EM: Round [1] log likelihood: -108747.200196
EM: Round [2] log likelihood: -108670.744886
EM: Round [3] log likelihood: -108634.841972
EM: Round [4] log likelihood: -108616.360946
EM: Round [5] log likelihood: -108606.232438
EM: Round [6] log likelihood: -108600.373737
EM: Round [7] log likelihood: -108596.808795
EM: Round [8] log likelihood: -108594.533952
EM: Round [9] log likelihood: -108593.018003
EM: Round [10] log likelihood: -108591.968264
EM: Round [11] log likelihood: -108591.216865
EM: Round [12] log likelihood: -108590.663646
EM: Round [13] log likelihood: -108590.246535
EM: Round [14] log likelihood: -108589.925675
EM: Round [15] log likelihood: -108589.674619
EM: Round [16] log likelihood: -108589.475295
EM: Round [17] log likelihood: -108589.315032
EM: Round [18] log likelihood: -108589.184736
EM: Round [19] log likelihood: -108589.077753
EM: Round [20] log likelihood: -108588.989132
EM: Round [21] log likelihood: -108588.915128
EM: Round [22] log likelihood: -108588.852878
EM: Round [23] log likelihood: -108588.800161
EM: Round [24] log likelihood: -108588.755240
EM: Round [25] log likelihood: -108588.716743
EM: Round [26] log likelihood: -108588.683574
EM: Round [27] log likelihood: -108588.654855
EM: Round [28] log likelihood: -108588.629872
EM: Round [29] log likelihood: -108588.608045
EM: Round [30] log likelihood: -108588.588898
EM: Round [31] log likelihood: -108588.572036
EM: Round [32] log likelihood: -108588.557133
EM: Round [33] log likelihood: -108588.543916
EM: Round [34] log likelihood: -108588.532156
EM: Round [35] log likelihood: -108588.521660
EM: Round [36] log likelihood: -108588.512263
EM: Round [37] log likelihood: -108588.503828
EM: Round [38] log likelihood: -108588.496234
EM: Round [39] log likelihood: -108588.489381
EM: Round [40] log likelihood: -108588.483179
EM: Round [41] log likelihood: -108588.477555
EM: Round [42] log likelihood: -108588.472442
EM: Round [43] log likelihood: -108588.467784
EM: Round [44] log likelihood: -108588.463531
EM: Round [45] log likelihood: -108588.459639
EM: Round [46] log likelihood: -108588.456071
EM: Round [47] log likelihood: -108588.452794
EM: Round [48] log likelihood: -108588.449779
EM: Round [49] log likelihood: -108588.446999
EM: Round [50] log likelihood: -108588.444432
EM: Round [51] log likelihood: -108588.442057
EM: Round [52] log likelihood: -108588.439858
EM: Round [53] log likelihood: -108588.437817
EM: Round [54] log likelihood: -108588.435920
EM: Round [55] log likelihood: -108588.434155
EM: Round [56] log likelihood: -108588.432511
EM: Round [57] log likelihood: -108588.430977
EM: Round [58] log likelihood: -108588.429544
EM: Round [59] log likelihood: -108588.428204
EM: Round [60] log likelihood: -108588.426949
EM: Round [61] log likelihood: -108588.425772
EM: Round [62] log likelihood: -108588.424668
EM: Round [63] log likelihood: -108588.423631
EM: Round [64] log likelihood: -108588.422656
EM: Round [65] log likelihood: -108588.421739
EM: Round [66] log likelihood: -108588.420874
EM: Round [67] log likelihood: -108588.420060
EM: Round [68] log likelihood: -108588.419291
EM: Round [69] log likelihood: -108588.418565
EM: Round [70] log likelihood: -108588.417878
EM: Round [71] log likelihood: -108588.417230
EM: Round [72] log likelihood: -108588.416615
EM: Round [73] log likelihood: -108588.416034
EM: Round [74] log likelihood: -108588.415483
EM: Round [75] log likelihood: -108588.414960
EM: Round [76] log likelihood: -108588.414464
EM: Round [77] log likelihood: -108588.413993
EM: Round [78] log likelihood: -108588.413546
EM: Round [79] log likelihood: -108588.413121
EM: Round [80] log likelihood: -108588.412717
EM: Round [81] log likelihood: -108588.412332
EM: Round [82] log likelihood: -108588.411966
EM: Round [83] log likelihood: -108588.411618
EM: Round [84] log likelihood: -108588.411286
EM: Round [85] log likelihood: -108588.410969
EM: Round [86] log likelihood: -108588.410667
EM: Round [87] log likelihood: -108588.410379
EM: Round [88] log likelihood: -108588.410104
EM: Round [89] log likelihood: -108588.409842
EM: Round [90] log likelihood: -108588.409591
EM: Round [91] log likelihood: -108588.409352
EM: Round [92] log likelihood: -108588.409123
EM: Round [93] log likelihood: -108588.408904
EM: Round [94] log likelihood: -108588.408694
EM: Round [95] log likelihood: -108588.408494
EM: Round [96] log likelihood: -108588.408302
EM: Round [97] log likelihood: -108588.408118
EM: Round [98] log likelihood: -108588.407942
EM: Round [99] log likelihood: -108588.407773
EM: Round [100] log likelihood: -108588.407611
EM: Round [101] log likelihood: -108588.407456
EM: Round [102] log likelihood: -108588.407308
EM: Round [103] log likelihood: -108588.407165
EM: Round [104] log likelihood: -108588.407028
EM: Round [105] log likelihood: -108588.406897
EM: Round [106] log likelihood: -108588.406770
EM: Round [107] log likelihood: -108588.406649
EM: Round [108] log likelihood: -108588.406532
EM: Round [109] log likelihood: -108588.406420
EM: Round [110] log likelihood: -108588.406313
EM: Round [111] log likelihood: -108588.406209
EM: Round [112] log likelihood: -108588.406109
EM: Stopping iterations at round 112 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 97538734 > /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir > /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir --annotate /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir
-done, see /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 476, filtered: 4833)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.fkUPKdCBFy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.fkUPKdCBFy/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000224086.6]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000277654.6]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000257180.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000262898.3]
WARNING, no entry stored in dbm for [ENSG00000276047.1]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000242547.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000214039.9]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000271162.1]
WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000224415.1]
WARNING, no entry stored in dbm for [ENSG00000287985.1]
WARNING, no entry stored in dbm for [ENSG00000232096.1]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000234769.7]
WARNING, no entry stored in dbm for [ENSG00000248656.3]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000251391.5]
WARNING, no entry stored in dbm for [ENSG00000237938.5]
WARNING, no entry stored in dbm for [ENSG00000228791.8]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000254465.1]
WARNING, no entry stored in dbm for [ENSG00000230521.1]
WARNING, no entry stored in dbm for [ENSG00000277072.5]
WARNING, no entry stored in dbm for [ENSG00000286423.1]
WARNING, no entry stored in dbm for [ENSG00000253408.6]
WARNING, no entry stored in dbm for [ENSG00000163597.15]
WARNING, no entry stored in dbm for [ENSG00000239397.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000287665.1]
WARNING, no entry stored in dbm for [ENSG00000198054.12]
WARNING, no entry stored in dbm for [ENSG00000255042.3]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000224897.8]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000228000.1]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000215869.4]
WARNING, no entry stored in dbm for [ENSG00000213872.3]
WARNING, no entry stored in dbm for [ENSG00000243944.5]
WARNING, no entry stored in dbm for [ENSG00000225661.7]
WARNING, no entry stored in dbm for [ENSG00000224987.1]
WARNING, no entry stored in dbm for [ENSG00000237169.1]
WARNING, no entry stored in dbm for [ENSG00000233940.1]
WARNING, no entry stored in dbm for [ENSG00000237169.1]
WARNING, no entry stored in dbm for [ENSG00000235330.2]
WARNING, no entry stored in dbm for [ENSG00000237169.1]
WARNING, no entry stored in dbm for [ENSG00000226279.2]
WARNING, no entry stored in dbm for [ENSG00000230853.1]
WARNING, no entry stored in dbm for [ENSG00000252772.1]
WARNING, no entry stored in dbm for [ENSG00000201469.1]
WARNING, no entry stored in dbm for [ENSG00000264618.2]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000240606.3]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000242559.3]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000229531.6]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000248466.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000226648.2]
WARNING, no entry stored in dbm for [ENSG00000254248.1]
WARNING, no entry stored in dbm for [ENSG00000242686.4]
WARNING, no entry stored in dbm for [ENSG00000257453.1]
WARNING, no entry stored in dbm for [ENSG00000239791.2]
WARNING, no entry stored in dbm for [ENSG00000244479.7]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000243847.3]
WARNING, no entry stored in dbm for [ENSG00000232728.1]
WARNING, no entry stored in dbm for [ENSG00000287996.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000270230.1]
WARNING, no entry stored in dbm for [ENSG00000226696.6]
WARNING, no entry stored in dbm for [ENSG00000186715.11]
WARNING, no entry stored in dbm for [ENSG00000237399.7]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000229051.2]
WARNING, no entry stored in dbm for [ENSG00000225518.3]
WARNING, no entry stored in dbm for [ENSG00000235437.8]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000235621.9]
WARNING, no entry stored in dbm for [ENSG00000226903.2]
WARNING, no entry stored in dbm for [ENSG00000224243.2]
WARNING, no entry stored in dbm for [ENSG00000225643.1]
WARNING, no entry stored in dbm for [ENSG00000257125.1]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000224431.1]
WARNING, no entry stored in dbm for [ENSG00000287972.1]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000265962.1]
WARNING, no entry stored in dbm for [ENSG00000235964.1]
WARNING, no entry stored in dbm for [ENSG00000228221.6]
WARNING, no entry stored in dbm for [ENSG00000261642.1]
WARNING, no entry stored in dbm for [ENSG00000232676.1]
WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [ENSG00000271569.1]
WARNING, no entry stored in dbm for [ENSG00000260515.1]
WARNING, no entry stored in dbm for [ENSG00000259603.1]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000259295.6]
WARNING, no entry stored in dbm for [ENSG00000272235.1]
WARNING, no entry stored in dbm for [ENSG00000237986.4]
WARNING, no entry stored in dbm for [ENSG00000249785.3]
WARNING, no entry stored in dbm for [ENSG00000223773.7]
WARNING, no entry stored in dbm for [ENSG00000225471.5]
WARNING, no entry stored in dbm for [ENSG00000288091.1]
WARNING, no entry stored in dbm for [ENSG00000253452.6]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000226948.2]
WARNING, no entry stored in dbm for [ENSG00000227288.3]
WARNING, no entry stored in dbm for [ENSG00000261239.6]
WARNING, no entry stored in dbm for [ENSG00000255449.1]
WARNING, no entry stored in dbm for [ENSG00000254902.1]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000226235.1]
WARNING, no entry stored in dbm for [ENSG00000230021.10]
WARNING, no entry stored in dbm for [ENSG00000230013.2]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000200434.1]
WARNING, no entry stored in dbm for [ENSG00000284620.2]
WARNING, no entry stored in dbm for [ENSG00000287860.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000279480.1]
WARNING, no entry stored in dbm for [ENSG00000259972.3]
WARNING, no entry stored in dbm for [ENSG00000240036.4]
WARNING, no entry stored in dbm for [ENSG00000280042.1]
WARNING, no entry stored in dbm for [ENSG00000286528.1]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000242169.2]
WARNING, no entry stored in dbm for [ENSG00000227777.1]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000263244.2]
WARNING, no entry stored in dbm for [ENSG00000224244.1]
WARNING, no entry stored in dbm for [ENSG00000255498.1]
WARNING, no entry stored in dbm for [ENSG00000205682.2]
WARNING, no entry stored in dbm for [ENSG00000286970.1]
WARNING, no entry stored in dbm for [ENSG00000234929.2]
WARNING, no entry stored in dbm for [ENSG00000263345.1]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000229988.2]
WARNING, no entry stored in dbm for [ENSG00000231704.6]
* STAR-Fusion complete. See output: /tmp/nxf.fkUPKdCBFy/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)