Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/99aaf7afdf6c020eef326e1796a9e6/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/ffe166a882d857b809d9e6eb4bb0e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/ffe166a882d857b809d9e6eb4bb0e9/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory