Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9f62ec4792ec6e60146f3cf22afa31/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/3e8a82e76bbc12a902ec65f52defc1/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/302953d139434537b5d7ee88342a6c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/302953d139434537b5d7ee88342a6c/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9f62ec4792ec6e60146f3cf22afa31/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.ZRHg7LAcQa/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary
-sample contains 33125823 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir -J /tmp/nxf.ZRHg7LAcQa/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.ZRHg7LAcQa/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[750000], rate=83025.83/min -building interval tree based on /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[750000], rate=79365.08/min -building interval tree based on /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[750000], rate=72697.90/min -building interval tree based on /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[750000], rate=64562.41/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir --filt_file /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
12000000.00 reads per min processed...
9000000.00 reads per min processed...
8000000.00 reads per min processed...
7500000.00 reads per min processed...
6000000.00 reads per min processed...
6000000.00 reads per min processed...
5333333.33 reads per min processed...
5400000.00 reads per min processed...
5454545.45 reads per min processed...
5076923.08 reads per min processed...
4800000.00 reads per min processed...
4875000.00 reads per min processed...
4666666.67 reads per min processed...
4736842.11 reads per min processed...
4800000.00 reads per min processed...
5100000.00 reads per min processed...
5142857.14 reads per min processed...
5428571.43 reads per min processed...
5217391.30 reads per min processed...
5250000.00 reads per min processed...
5280000.00 reads per min processed...
5307692.31 reads per min processed...
5142857.14 reads per min processed...
5172413.79 reads per min processed...
5200000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.ZRHg7LAcQa/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -40075.991721
EM: Round [1] log likelihood: -39986.308720
EM: Round [2] log likelihood: -39948.816065
EM: Round [3] log likelihood: -39930.100910
EM: Round [4] log likelihood: -39919.884110
EM: Round [5] log likelihood: -39914.041051
EM: Round [6] log likelihood: -39910.575486
EM: Round [7] log likelihood: -39908.444311
EM: Round [8] log likelihood: -39907.085844
EM: Round [9] log likelihood: -39906.190140
EM: Round [10] log likelihood: -39905.581190
EM: Round [11] log likelihood: -39905.155814
EM: Round [12] log likelihood: -39904.851535
EM: Round [13] log likelihood: -39904.629325
EM: Round [14] log likelihood: -39904.464085
EM: Round [15] log likelihood: -39904.339245
EM: Round [16] log likelihood: -39904.243599
EM: Round [17] log likelihood: -39904.169405
EM: Round [18] log likelihood: -39904.111210
EM: Round [19] log likelihood: -39904.065110
EM: Round [20] log likelihood: -39904.028262
EM: Round [21] log likelihood: -39903.998570
EM: Round [22] log likelihood: -39903.974466
EM: Round [23] log likelihood: -39903.954768
EM: Round [24] log likelihood: -39903.938568
EM: Round [25] log likelihood: -39903.925170
EM: Round [26] log likelihood: -39903.914029
EM: Round [27] log likelihood: -39903.904720
EM: Round [28] log likelihood: -39903.896903
EM: Round [29] log likelihood: -39903.890312
EM: Round [30] log likelihood: -39903.884729
EM: Round [31] log likelihood: -39903.879982
EM: Round [32] log likelihood: -39903.875929
EM: Round [33] log likelihood: -39903.872456
EM: Round [34] log likelihood: -39903.869468
EM: Round [35] log likelihood: -39903.866889
EM: Round [36] log likelihood: -39903.864654
EM: Round [37] log likelihood: -39903.862711
EM: Round [38] log likelihood: -39903.861015
EM: Round [39] log likelihood: -39903.859531
EM: Round [40] log likelihood: -39903.858227
EM: Round [41] log likelihood: -39903.857077
EM: Round [42] log likelihood: -39903.856061
EM: Round [43] log likelihood: -39903.855159
EM: Round [44] log likelihood: -39903.854355
EM: Round [45] log likelihood: -39903.853638
EM: Round [46] log likelihood: -39903.852995
EM: Round [47] log likelihood: -39903.852418
EM: Round [48] log likelihood: -39903.851897
EM: Round [49] log likelihood: -39903.851426
EM: Round [50] log likelihood: -39903.850998
EM: Round [51] log likelihood: -39903.850610
EM: Round [52] log likelihood: -39903.850256
EM: Round [53] log likelihood: -39903.849931
EM: Round [54] log likelihood: -39903.849634
EM: Round [55] log likelihood: -39903.849361
EM: Round [56] log likelihood: -39903.849109
EM: Round [57] log likelihood: -39903.848877
EM: Round [58] log likelihood: -39903.848662
EM: Round [59] log likelihood: -39903.848462
EM: Round [60] log likelihood: -39903.848276
EM: Round [61] log likelihood: -39903.848103
EM: Round [62] log likelihood: -39903.847942
EM: Round [63] log likelihood: -39903.847791
EM: Round [64] log likelihood: -39903.847650
EM: Round [65] log likelihood: -39903.847517
EM: Round [66] log likelihood: -39903.847393
EM: Round [67] log likelihood: -39903.847276
EM: Round [68] log likelihood: -39903.847166
EM: Round [69] log likelihood: -39903.847062
EM: Round [70] log likelihood: -39903.846964
EM: Stopping iterations at round 70 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -40058.028998
EM: Round [1] log likelihood: -39975.770282
EM: Round [2] log likelihood: -39942.342874
EM: Round [3] log likelihood: -39926.029848
EM: Round [4] log likelihood: -39917.271612
EM: Round [5] log likelihood: -39912.323410
EM: Round [6] log likelihood: -39909.414764
EM: Round [7] log likelihood: -39907.637914
EM: Round [8] log likelihood: -39906.510882
EM: Round [9] log likelihood: -39905.770461
EM: Round [10] log likelihood: -39905.268383
EM: Round [11] log likelihood: -39904.918290
EM: Round [12] log likelihood: -39904.668169
EM: Round [13] log likelihood: -39904.485666
EM: Round [14] log likelihood: -39904.350045
EM: Round [15] log likelihood: -39904.247647
EM: Round [16] log likelihood: -39904.169248
EM: Round [17] log likelihood: -39904.108481
EM: Round [18] log likelihood: -39904.060865
EM: Round [19] log likelihood: -39904.023188
EM: Round [20] log likelihood: -39903.993113
EM: Round [21] log likelihood: -39903.968915
EM: Round [22] log likelihood: -39903.949305
EM: Round [23] log likelihood: -39903.933306
EM: Round [24] log likelihood: -39903.920175
EM: Round [25] log likelihood: -39903.909335
EM: Round [26] log likelihood: -39903.900340
EM: Round [27] log likelihood: -39903.892839
EM: Round [28] log likelihood: -39903.886553
EM: Round [29] log likelihood: -39903.881263
EM: Round [30] log likelihood: -39903.876791
EM: Round [31] log likelihood: -39903.872995
EM: Round [32] log likelihood: -39903.869760
EM: Round [33] log likelihood: -39903.866991
EM: Round [34] log likelihood: -39903.864613
EM: Round [35] log likelihood: -39903.862562
EM: Round [36] log likelihood: -39903.860787
EM: Round [37] log likelihood: -39903.859245
EM: Round [38] log likelihood: -39903.857900
EM: Round [39] log likelihood: -39903.856722
EM: Round [40] log likelihood: -39903.855688
EM: Round [41] log likelihood: -39903.854775
EM: Round [42] log likelihood: -39903.853968
EM: Round [43] log likelihood: -39903.853251
EM: Round [44] log likelihood: -39903.852611
EM: Round [45] log likelihood: -39903.852039
EM: Round [46] log likelihood: -39903.851526
EM: Round [47] log likelihood: -39903.851063
EM: Round [48] log likelihood: -39903.850646
EM: Round [49] log likelihood: -39903.850267
EM: Round [50] log likelihood: -39903.849922
EM: Round [51] log likelihood: -39903.849608
EM: Round [52] log likelihood: -39903.849321
EM: Round [53] log likelihood: -39903.849057
EM: Round [54] log likelihood: -39903.848814
EM: Round [55] log likelihood: -39903.848590
EM: Round [56] log likelihood: -39903.848383
EM: Round [57] log likelihood: -39903.848191
EM: Round [58] log likelihood: -39903.848013
EM: Round [59] log likelihood: -39903.847847
EM: Round [60] log likelihood: -39903.847693
EM: Round [61] log likelihood: -39903.847548
EM: Round [62] log likelihood: -39903.847413
EM: Round [63] log likelihood: -39903.847286
EM: Round [64] log likelihood: -39903.847166
EM: Round [65] log likelihood: -39903.847054
EM: Round [66] log likelihood: -39903.846949
EM: Round [67] log likelihood: -39903.846849
EM: Stopping iterations at round 67 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 33125823 > /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir > /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir --annotate /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir
-done, see /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 260, filtered: 2906)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.ZRHg7LAcQa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ZRHg7LAcQa/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000223202.1]
WARNING, no entry stored in dbm for [ENSG00000200966.1]
WARNING, no entry stored in dbm for [ENSG00000172460.17]
WARNING, no entry stored in dbm for [ENSG00000272235.1]
WARNING, no entry stored in dbm for [ENSG00000217896.2]
WARNING, no entry stored in dbm for [ENSG00000231064.7]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000207652.1]
WARNING, no entry stored in dbm for [ENSG00000227954.7]
WARNING, no entry stored in dbm for [ENSG00000233590.1]
WARNING, no entry stored in dbm for [ENSG00000243538.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000240992.1]
WARNING, no entry stored in dbm for [ENSG00000233072.1]
WARNING, no entry stored in dbm for [ENSG00000214535.3]
WARNING, no entry stored in dbm for [ENSG00000237745.1]
WARNING, no entry stored in dbm for [ENSG00000230171.1]
WARNING, no entry stored in dbm for [ENSG00000213935.3]
WARNING, no entry stored in dbm for [ENSG00000235266.1]
WARNING, no entry stored in dbm for [ENSG00000203993.6]
WARNING, no entry stored in dbm for [ENSG00000285492.1]
WARNING, no entry stored in dbm for [ENSG00000273129.2]
WARNING, no entry stored in dbm for [ENSG00000247121.7]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000267882.2]
WARNING, no entry stored in dbm for [ENSG00000259275.4]
WARNING, no entry stored in dbm for [ENSG00000214807.2]
WARNING, no entry stored in dbm for [ENSG00000226703.1]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000253230.9]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000261801.6]
WARNING, no entry stored in dbm for [ENSG00000234634.2]
WARNING, no entry stored in dbm for [ENSG00000237339.5]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000279811.1]
WARNING, no entry stored in dbm for [ENSG00000206192.7]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000258673.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249072.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227908.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000273082.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000258498.8]
WARNING, no entry stored in dbm for [ENSG00000286340.1]
WARNING, no entry stored in dbm for [ENSG00000203993.6]
WARNING, no entry stored in dbm for [ENSG00000273668.1]
WARNING, no entry stored in dbm for [ENSG00000237480.3]
WARNING, no entry stored in dbm for [ENSG00000231883.1]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000287460.1]
WARNING, no entry stored in dbm for [ENSG00000287559.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000231549.1]
WARNING, no entry stored in dbm for [ENSG00000287215.1]
WARNING, no entry stored in dbm for [ENSG00000274502.1]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000228685.1]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000237445.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000202058.1]
WARNING, no entry stored in dbm for [ENSG00000201428.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000278408.1]
WARNING, no entry stored in dbm for [ENSG00000286152.1]
WARNING, no entry stored in dbm for [ENSG00000258320.1]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000253408.6]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000268729.1]
WARNING, no entry stored in dbm for [ENSG00000205682.2]
WARNING, no entry stored in dbm for [ENSG00000248540.3]
WARNING, no entry stored in dbm for [ENSG00000245317.2]
WARNING, no entry stored in dbm for [ENSG00000260041.5]
WARNING, no entry stored in dbm for [ENSG00000229110.1]
WARNING, no entry stored in dbm for [ENSG00000239345.2]
* STAR-Fusion complete. See output: /tmp/nxf.ZRHg7LAcQa/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)