Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/8fa7fe2a07073bece8a88609e86a7c/BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/c7d229f6f3f8b97223d19cc4cabf22/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/c7d229f6f3f8b97223d19cc4cabf22/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory