AIH curated blacklist: matched 8 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 125
Pass (FILTER=PASS): 19 (15.2%)
Fail (FILTER=FAIL): 106 (84.8%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 8
All 8 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 12
confidence_below_min(low<high): 12
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 10
confidence_below_min(medium<high): 8
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0);aih_curated_blacklist: 2
aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 1
Breakdown by confidence:
high: 19 pass, 1 fail (total: 20)
low: 0 pass, 85 fail (total: 85)
medium: 0 pass, 20 fail (total: 20)
Arriba filter: 125 rows -> 19 PASS; wrote FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered.tsv and FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.arriba.fusions.filter_summary.txt