File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/7c65f65dc618e0010f7c5582e13323/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/known_fusions_hg38_GRCh38_v2.4.0.tsv.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/7c65f65dc618e0010f7c5582e13323/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/8368a0af62626d5dfc607456b70305/SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/blacklist_hg38_GRCh38_v2.4.0.tsv.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/7c65f65dc618e0010f7c5582e13323/.command.run
==> STAGING COMPLETE (8 inputs)

[2026-06-08T09:03:28] Launching Arriba 2.4.0
[2026-06-08T09:03:28] Loading assembly from 'ref_genome.fa' 
[2026-06-08T09:03:48] Loading annotation from 'ref_annot.gtf' 
[2026-06-08T09:03:54] Reading chimeric alignments from 'SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam'