AIH curated blacklist: matched 10 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 404
Pass (FILTER=PASS): 67 (16.6%)
Fail (FILTER=FAIL): 337 (83.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 10
All 10 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 91
confidence_below_min(medium<high): 57
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 26
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 19
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 19
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 18
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 18
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(low<high): 10
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
Breakdown by confidence:
high: 67 pass, 7 fail (total: 74)
low: 0 pass, 192 fail (total: 192)
medium: 0 pass, 138 fail (total: 138)
Arriba filter: 404 rows -> 67 PASS; wrote SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered.tsv and SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3.arriba.fusions.filter_summary.txt