[W::hts_idx_load3] The index file is older than the data file: BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	4142211
Known Splicing Events:	4064461
Partial Novel Splicing Events:	25435
Novel Splicing Events:	49507
Filtered Splicing Events:	2808

Total splicing  Junctions:	99892
Known Splicing Junctions:	93921
Partial Novel Splicing Junctions:	2491
Novel Splicing Junctions:	3480

===================================================================
Create BED file ...
Create Interact file ...