Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/7d7c8796781de15d9831a287568577/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/dc8c02793ebd6150373337c95cb930/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/dc8c02793ebd6150373337c95cb930/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/7d7c8796781de15d9831a287568577/.command.run
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory