Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/eceb8d76b8d73d863e88d4a1bbb07c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/9a4485baa6545edd01a381205ec5e0/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/eceb8d76b8d73d863e88d4a1bbb07c/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory