Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 16090
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 16090
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:16090
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABCB9--ACOT13 HAVANA gene 32415 39747 . + . FI_gene_label "ACOT13^ENSG00000112304.11" ; ID "ABCB9--ACOT13^ACOT13^ENSG00000112304.11" ; ccdsid "CCDS4558.1" ; exon_id "ENSE00001174688.4" ; exon_number 1 ; gene_id "ABCB9--ACOT13^ACOT13^ENSG00000112304.11" ; gene_name ACOT13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014359.3" ; havana_transcript "OTTHUMT00000040010.3" ; hgnc_id "HGNC:20999" ; level 2 ; orig_coord_info "chr6,24667264,24667344,+" ; protein_id "ENSP00000230048.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCB9--ACOT13^ENST00000230048.5" ; transcript_name "ACOT13-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABCB9--ACOT13 HAVANA mRNA 32415 39747 . + . FI_gene_label "ACOT13^ENSG00000112304.11" ; ID "ABCB9--ACOT13^ENST00000230048.5" ; Parent "ABCB9--ACOT13^ACOT13^ENSG00000112304.11" ; ccdsid "CCDS4558.1" ; exon_id "ENSE00001174688.4" ; exon_number 1 ; gene_id "ABCB9--ACOT13^ACOT13^ENSG00000112304.11" ; gene_name ACOT13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014359.3" ; havana_transcript "OTTHUMT00000040010.3" ; hgnc_id "HGNC:20999" ; level 2 ; orig_coord_info "chr6,24667264,24667344,+" ; protein_id "ENSP00000230048.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ABCB9--ACOT13^ENST00000230048.5" ; transcript_name "ACOT13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABCB9--ACOT13 HAVANA gene 7858 26993 . + . FI_gene_label "ABCB9^ENSG00000150967.18" ; ID "ABCB9--ACOT13^ABCB9^ENSG00000150967.18" ; ccdsid "CCDS9241.1" ; exon_id "ENSE00002620540.1" ; exon_number 2 ; gene_id "ABCB9--ACOT13^ABCB9^ENSG00000150967.18" ; gene_name ABCB9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168769.7" ; havana_transcript "OTTHUMT00000400953.3" ; hgnc_id "HGNC:50" ; level 2 ; orig_coord_info "chr12,122959635,122960235,-" ; protein_id "ENSP00000280560.8" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "ABCB9--ACOT13^ENST00000280560.13" ; transcript_name "ABCB9-201" ; transcript_support_level 1 ; transcript_type protein_coding
ABCB9--ACOT13 HAVANA mRNA 7858 26993 . + . FI_gene_label "ABCB9^ENSG00000150967.18" ; ID "ABCB9--ACOT13^ENST00000280560.13" ; Parent "ABCB9--ACOT13^ABCB9^ENSG00000150967.18" ; ccdsid "CCDS9241.1" ; exon_id "ENSE00002620540.1" ; exon_number 2 ; gene_id "ABCB9--ACOT13^ABCB9^ENSG00000150967.18" ; gene_name ABCB9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168769.7" ; havana_transcript "OTTHUMT00000400953.3" ; hgnc_id "HGNC:50" ; level 2 ; orig_coord_info "chr12,122959635,122960235,-" ; protein_id "ENSP00000280560.8" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "ABCB9--ACOT13^ENST00000280560.13" ; transcript_name "ABCB9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC090946.1--MBNL1 ENSEMBL gene 6865 29271 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "AC090946.1--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "AC090946.1--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AC090946.1--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC090946.1--MBNL1 ENSEMBL mRNA 6865 29271 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "AC090946.1--MBNL1^ENST00000282486.10" ; Parent "AC090946.1--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "AC090946.1--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AC090946.1--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ACOT8--WASH3P HAVANA gene 1014 9683 . + . FI_gene_label "ACOT8^ENSG00000101473.17" ; ID "ACOT8--WASH3P^ACOT8^ENSG00000101473.17" ; ccdsid "CCDS13378.1" ; exon_id "ENSE00001905512.2" ; exon_number 1 ; gene_id "ACOT8--WASH3P^ACOT8^ENSG00000101473.17" ; gene_name ACOT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033045.9" ; havana_transcript "OTTHUMT00000080338.3" ; hgnc_id "HGNC:15919" ; level 2 ; orig_coord_info "chr20,45857188,45857315,-" ; protein_id "ENSP00000217455.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT8--WASH3P^ENST00000217455.9" ; transcript_name "ACOT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACOT8--WASH3P HAVANA mRNA 1014 9683 . + . FI_gene_label "ACOT8^ENSG00000101473.17" ; ID "ACOT8--WASH3P^ENST00000217455.9" ; Parent "ACOT8--WASH3P^ACOT8^ENSG00000101473.17" ; ccdsid "CCDS13378.1" ; exon_id "ENSE00001905512.2" ; exon_number 1 ; gene_id "ACOT8--WASH3P^ACOT8^ENSG00000101473.17" ; gene_name ACOT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033045.9" ; havana_transcript "OTTHUMT00000080338.3" ; hgnc_id "HGNC:15919" ; level 2 ; orig_coord_info "chr20,45857188,45857315,-" ; protein_id "ENSP00000217455.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT8--WASH3P^ENST00000217455.9" ; transcript_name "ACOT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKHD1--PCDH1 HAVANA gene 9757 28156 . + . FI_gene_label "ANKHD1^ENSG00000131503.21" ; ID "ANKHD1--PCDH1^ANKHD1^ENSG00000131503.21" ; exon_id "ENSE00001627342.1" ; exon_number 1 ; gene_id "ANKHD1--PCDH1^ANKHD1^ENSG00000131503.21" ; gene_name ANKHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161610.4" ; havana_transcript "OTTHUMT00000268740.2" ; hgnc_id "HGNC:24714" ; level 2 ; orig_coord_info "chr5,140459257,140459355,+" ; protein_id "ENSP00000246149.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "ANKHD1--PCDH1^ENST00000246149.10" ; transcript_name "ANKHD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ANKHD1--PCDH1 HAVANA mRNA 9757 28156 . + . FI_gene_label "ANKHD1^ENSG00000131503.21" ; ID "ANKHD1--PCDH1^ENST00000246149.10" ; Parent "ANKHD1--PCDH1^ANKHD1^ENSG00000131503.21" ; exon_id "ENSE00001627342.1" ; exon_number 1 ; gene_id "ANKHD1--PCDH1^ANKHD1^ENSG00000131503.21" ; gene_name ANKHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161610.4" ; havana_transcript "OTTHUMT00000268740.2" ; hgnc_id "HGNC:24714" ; level 2 ; orig_coord_info "chr5,140459257,140459355,+" ; protein_id "ENSP00000246149.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "ANKHD1--PCDH1^ENST00000246149.10" ; transcript_name "ANKHD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANKHD1--PCDH1 HAVANA gene 42252 54705 . + . FI_gene_label "PCDH1^ENSG00000156453.14" ; ID "ANKHD1--PCDH1^PCDH1^ENSG00000156453.14" ; ccdsid "CCDS4267.1" ; exon_id "ENSE00002079876.1" ; exon_number 1 ; gene_id "ANKHD1--PCDH1^PCDH1^ENSG00000156453.14" ; gene_name PCDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129661.6" ; havana_transcript "OTTHUMT00000320587.3" ; hgnc_id "HGNC:8655" ; level 2 ; orig_coord_info "chr5,141878223,141878262,-" ; protein_id "ENSP00000287008.3" ; tag inferred_transcript_model basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKHD1--PCDH1^ENST00000287008.8" ; transcript_name "PCDH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ANKHD1--PCDH1 HAVANA mRNA 42252 54705 . + . FI_gene_label "PCDH1^ENSG00000156453.14" ; ID "ANKHD1--PCDH1^ENST00000287008.8" ; Parent "ANKHD1--PCDH1^PCDH1^ENSG00000156453.14" ; ccdsid "CCDS4267.1" ; exon_id "ENSE00002079876.1" ; exon_number 1 ; gene_id "ANKHD1--PCDH1^PCDH1^ENSG00000156453.14" ; gene_name PCDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129661.6" ; havana_transcript "OTTHUMT00000320587.3" ; hgnc_id "HGNC:8655" ; level 2 ; orig_coord_info "chr5,141878223,141878262,-" ; protein_id "ENSP00000287008.3" ; tag inferred_transcript_model basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKHD1--PCDH1^ENST00000287008.8" ; transcript_name "PCDH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATAD5--TLK2 HAVANA gene 1001 26162 . + . FI_gene_label "ATAD5^ENSG00000176208.9" ; ID "ATAD5--TLK2^ATAD5^ENSG00000176208.9" ; ccdsid "CCDS11260.1" ; exon_id "ENSE00003850234.1" ; exon_number 1 ; gene_id "ATAD5--TLK2^ATAD5^ENSG00000176208.9" ; gene_name ATAD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132794.4" ; havana_transcript "OTTHUMT00000256206.3" ; hgnc_id "HGNC:25752" ; level 2 ; orig_coord_info "chr17,30832348,30832413,+" ; protein_id "ENSP00000313171.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATAD5--TLK2^ENST00000321990.5" ; transcript_name "ATAD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATAD5--TLK2 HAVANA mRNA 1001 26162 . + . FI_gene_label "ATAD5^ENSG00000176208.9" ; ID "ATAD5--TLK2^ENST00000321990.5" ; Parent "ATAD5--TLK2^ATAD5^ENSG00000176208.9" ; ccdsid "CCDS11260.1" ; exon_id "ENSE00003850234.1" ; exon_number 1 ; gene_id "ATAD5--TLK2^ATAD5^ENSG00000176208.9" ; gene_name ATAD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132794.4" ; havana_transcript "OTTHUMT00000256206.3" ; hgnc_id "HGNC:25752" ; level 2 ; orig_coord_info "chr17,30832348,30832413,+" ; protein_id "ENSP00000313171.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATAD5--TLK2^ENST00000321990.5" ; transcript_name "ATAD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATAD5--TLK2 HAVANA gene 32946 63216 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "ATAD5--TLK2^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "ATAD5--TLK2^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "ATAD5--TLK2^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATAD5--TLK2 HAVANA mRNA 32946 63216 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "ATAD5--TLK2^ENST00000326270.13" ; Parent "ATAD5--TLK2^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "ATAD5--TLK2^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "ATAD5--TLK2^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BLOC1S6--AKAP13 HAVANA gene 1166 14400 . + . FI_gene_label "BLOC1S6^ENSG00000104164.12" ; ID "BLOC1S6--AKAP13^BLOC1S6^ENSG00000104164.12" ; ccdsid "CCDS10126.1" ; exon_id "ENSE00003900840.1" ; exon_number 1 ; gene_id "BLOC1S6--AKAP13^BLOC1S6^ENSG00000104164.12" ; gene_name BLOC1S6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131477.6" ; havana_transcript "OTTHUMT00000254320.3" ; hgnc_id "HGNC:8549" ; level 2 ; orig_coord_info "chr15,45587444,45587525,+" ; protein_id "ENSP00000220531.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "BLOC1S6--AKAP13^ENST00000220531.9" ; transcript_name "BLOC1S6-201" ; transcript_support_level 1 ; transcript_type protein_coding
BLOC1S6--AKAP13 HAVANA mRNA 1166 14400 . + . FI_gene_label "BLOC1S6^ENSG00000104164.12" ; ID "BLOC1S6--AKAP13^ENST00000220531.9" ; Parent "BLOC1S6--AKAP13^BLOC1S6^ENSG00000104164.12" ; ccdsid "CCDS10126.1" ; exon_id "ENSE00003900840.1" ; exon_number 1 ; gene_id "BLOC1S6--AKAP13^BLOC1S6^ENSG00000104164.12" ; gene_name BLOC1S6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131477.6" ; havana_transcript "OTTHUMT00000254320.3" ; hgnc_id "HGNC:8549" ; level 2 ; orig_coord_info "chr15,45587444,45587525,+" ; protein_id "ENSP00000220531.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "BLOC1S6--AKAP13^ENST00000220531.9" ; transcript_name "BLOC1S6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BLOC1S6--AKAP13 HAVANA gene 18819 75809 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "BLOC1S6--AKAP13^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "BLOC1S6--AKAP13^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BLOC1S6--AKAP13^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
BLOC1S6--AKAP13 HAVANA mRNA 18819 75809 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "BLOC1S6--AKAP13^ENST00000361243.6" ; Parent "BLOC1S6--AKAP13^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "BLOC1S6--AKAP13^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BLOC1S6--AKAP13^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC85C--SETD3 HAVANA gene 29516 40935 . + . FI_gene_label "SETD3^ENSG00000183576.13" ; ID "CCDC85C--SETD3^SETD3^ENSG00000183576.13" ; ccdsid "CCDS9952.1" ; exon_id "ENSE00003479105.1" ; exon_number 2 ; gene_id "CCDC85C--SETD3^SETD3^ENSG00000183576.13" ; gene_name SETD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028970.7" ; havana_transcript "OTTHUMT00000072341.2" ; hgnc_id "HGNC:20493" ; level 2 ; orig_coord_info "chr14,99465703,99465805,-" ; protein_id "ENSP00000327910.3" ; tag basic CCDS ; transcript_id "CCDC85C--SETD3^ENST00000329331.7" ; transcript_name "SETD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC85C--SETD3 HAVANA mRNA 29516 40935 . + . FI_gene_label "SETD3^ENSG00000183576.13" ; ID "CCDC85C--SETD3^ENST00000329331.7" ; Parent "CCDC85C--SETD3^SETD3^ENSG00000183576.13" ; ccdsid "CCDS9952.1" ; exon_id "ENSE00003479105.1" ; exon_number 2 ; gene_id "CCDC85C--SETD3^SETD3^ENSG00000183576.13" ; gene_name SETD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028970.7" ; havana_transcript "OTTHUMT00000072341.2" ; hgnc_id "HGNC:20493" ; level 2 ; orig_coord_info "chr14,99465703,99465805,-" ; protein_id "ENSP00000327910.3" ; tag basic CCDS ; transcript_id "CCDC85C--SETD3^ENST00000329331.7" ; transcript_name "SETD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC85C--SETD3 HAVANA gene 1001 26414 . + . FI_gene_label "CCDC85C^ENSG00000205476.9" ; ID "CCDC85C--SETD3^CCDC85C^ENSG00000205476.9" ; ccdsid "CCDS45161.1" ; exon_id "ENSE00001484231.4" ; exon_number 1 ; gene_id "CCDC85C--SETD3^CCDC85C^ENSG00000205476.9" ; gene_name CCDC85C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171506.5" ; havana_transcript "OTTHUMT00000413802.4" ; hgnc_id "HGNC:35459" ; level 2 ; orig_coord_info "chr14,99603167,99603959,-" ; protein_id "ENSP00000369592.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC85C--SETD3^ENST00000380243.9" ; transcript_name "CCDC85C-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC85C--SETD3 HAVANA mRNA 1001 26414 . + . FI_gene_label "CCDC85C^ENSG00000205476.9" ; ID "CCDC85C--SETD3^ENST00000380243.9" ; Parent "CCDC85C--SETD3^CCDC85C^ENSG00000205476.9" ; ccdsid "CCDS45161.1" ; exon_id "ENSE00001484231.4" ; exon_number 1 ; gene_id "CCDC85C--SETD3^CCDC85C^ENSG00000205476.9" ; gene_name CCDC85C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171506.5" ; havana_transcript "OTTHUMT00000413802.4" ; hgnc_id "HGNC:35459" ; level 2 ; orig_coord_info "chr14,99603167,99603959,-" ; protein_id "ENSP00000369592.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC85C--SETD3^ENST00000380243.9" ; transcript_name "CCDC85C-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CPNE1--PREX1 HAVANA gene 4827 10949 . + . FI_gene_label "CPNE1^ENSG00000214078.13" ; ID "CPNE1--PREX1^CPNE1^ENSG00000214078.13" ; ccdsid "CCDS46595.1" ; exon_id "ENSE00001237776.5" ; exon_number 1 ; gene_id "CPNE1--PREX1^CPNE1^ENSG00000214078.13" ; gene_name CPNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032356.33" ; havana_transcript "OTTHUMT00000078910.2" ; hgnc_id "HGNC:2314" ; level 2 ; orig_coord_info "chr20,35653528,35653542,-" ; protein_id "ENSP00000317257.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "CPNE1--PREX1^ENST00000317677.9" ; transcript_name "CPNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPNE1--PREX1 HAVANA mRNA 4827 10949 . + . FI_gene_label "CPNE1^ENSG00000214078.13" ; ID "CPNE1--PREX1^ENST00000317677.9" ; Parent "CPNE1--PREX1^CPNE1^ENSG00000214078.13" ; ccdsid "CCDS46595.1" ; exon_id "ENSE00001237776.5" ; exon_number 1 ; gene_id "CPNE1--PREX1^CPNE1^ENSG00000214078.13" ; gene_name CPNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032356.33" ; havana_transcript "OTTHUMT00000078910.2" ; hgnc_id "HGNC:2314" ; level 2 ; orig_coord_info "chr20,35653528,35653542,-" ; protein_id "ENSP00000317257.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "CPNE1--PREX1^ENST00000317677.9" ; transcript_name "CPNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPNE1--PREX1 HAVANA gene 13963 55152 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "CPNE1--PREX1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "CPNE1--PREX1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPNE1--PREX1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPNE1--PREX1 HAVANA mRNA 13963 55152 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "CPNE1--PREX1^ENST00000371941.4" ; Parent "CPNE1--PREX1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "CPNE1--PREX1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPNE1--PREX1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSE1L--AL035685.1 HAVANA gene 1067 23797 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "CSE1L--AL035685.1^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "CSE1L--AL035685.1^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSE1L--AL035685.1^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSE1L--AL035685.1 HAVANA mRNA 1067 23797 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "CSE1L--AL035685.1^ENST00000262982.3" ; Parent "CSE1L--AL035685.1^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "CSE1L--AL035685.1^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSE1L--AL035685.1^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYTH1--EIF3H HAVANA gene 26949 42455 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "CYTH1--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "CYTH1--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "CYTH1--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
CYTH1--EIF3H HAVANA mRNA 26949 42455 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "CYTH1--EIF3H^ENST00000276682.8" ; Parent "CYTH1--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "CYTH1--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "CYTH1--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CYTH1--EIF3H ENSEMBL gene 1004 23278 . + . FI_gene_label "CYTH1^ENSG00000108669.16" ; ID "CYTH1--EIF3H^CYTH1^ENSG00000108669.16" ; exon_id "ENSE00002709952.1" ; exon_number 1 ; gene_id "CYTH1--EIF3H^CYTH1^ENSG00000108669.16" ; gene_name CYTH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150253.6" ; hgnc_id "HGNC:9501" ; level 3 ; orig_coord_info "chr17,78782202,78782223,-" ; protein_id "ENSP00000354398.4" ; tag basic appris_principal_4 ; transcript_id "CYTH1--EIF3H^ENST00000361101.8" ; transcript_name "CYTH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYTH1--EIF3H ENSEMBL mRNA 1004 23278 . + . FI_gene_label "CYTH1^ENSG00000108669.16" ; ID "CYTH1--EIF3H^ENST00000361101.8" ; Parent "CYTH1--EIF3H^CYTH1^ENSG00000108669.16" ; exon_id "ENSE00002709952.1" ; exon_number 1 ; gene_id "CYTH1--EIF3H^CYTH1^ENSG00000108669.16" ; gene_name CYTH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150253.6" ; hgnc_id "HGNC:9501" ; level 3 ; orig_coord_info "chr17,78782202,78782223,-" ; protein_id "ENSP00000354398.4" ; tag basic appris_principal_4 ; transcript_id "CYTH1--EIF3H^ENST00000361101.8" ; transcript_name "CYTH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEPDC1B--PDE4D HAVANA gene 1025 16919 . + . FI_gene_label "DEPDC1B^ENSG00000035499.13" ; ID "DEPDC1B--PDE4D^DEPDC1B^ENSG00000035499.13" ; ccdsid "CCDS3977.1" ; exon_id "ENSE00001838018.2" ; exon_number 1 ; gene_id "DEPDC1B--PDE4D^DEPDC1B^ENSG00000035499.13" ; gene_name DEPDC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000097083.4" ; havana_transcript "OTTHUMT00000214207.2" ; hgnc_id "HGNC:24902" ; level 2 ; orig_coord_info "chr5,60700046,60700093,-" ; protein_id "ENSP00000265036.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEPDC1B--PDE4D^ENST00000265036.10" ; transcript_name "DEPDC1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
DEPDC1B--PDE4D HAVANA mRNA 1025 16919 . + . FI_gene_label "DEPDC1B^ENSG00000035499.13" ; ID "DEPDC1B--PDE4D^ENST00000265036.10" ; Parent "DEPDC1B--PDE4D^DEPDC1B^ENSG00000035499.13" ; ccdsid "CCDS3977.1" ; exon_id "ENSE00001838018.2" ; exon_number 1 ; gene_id "DEPDC1B--PDE4D^DEPDC1B^ENSG00000035499.13" ; gene_name DEPDC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000097083.4" ; havana_transcript "OTTHUMT00000214207.2" ; hgnc_id "HGNC:24902" ; level 2 ; orig_coord_info "chr5,60700046,60700093,-" ; protein_id "ENSP00000265036.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEPDC1B--PDE4D^ENST00000265036.10" ; transcript_name "DEPDC1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEPDC1B--PDE4D HAVANA gene 38246 71121 . + . FI_gene_label "PDE4D^ENSG00000113448.19" ; ID "DEPDC1B--PDE4D^PDE4D^ENSG00000113448.19" ; exon_id "ENSE00001558796.1" ; exon_number 1 ; gene_id "DEPDC1B--PDE4D^PDE4D^ENSG00000113448.19" ; gene_name PDE4D ; gene_type protein_coding ; havana_gene "OTTHUMG00000162218.9" ; havana_transcript "OTTHUMT00000368104.1" ; hgnc_id "HGNC:8783" ; level 2 ; orig_coord_info "chr5,59768247,59768509,-" ; protein_id "ENSP00000308485.6" ; transcript_id "DEPDC1B--PDE4D^ENST00000309641.10" ; transcript_name "PDE4D-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
DEPDC1B--PDE4D HAVANA mRNA 38246 71121 . + . FI_gene_label "PDE4D^ENSG00000113448.19" ; ID "DEPDC1B--PDE4D^ENST00000309641.10" ; Parent "DEPDC1B--PDE4D^PDE4D^ENSG00000113448.19" ; exon_id "ENSE00001558796.1" ; exon_number 1 ; gene_id "DEPDC1B--PDE4D^PDE4D^ENSG00000113448.19" ; gene_name PDE4D ; gene_type protein_coding ; havana_gene "OTTHUMG00000162218.9" ; havana_transcript "OTTHUMT00000368104.1" ; hgnc_id "HGNC:8783" ; level 2 ; orig_coord_info "chr5,59768247,59768509,-" ; protein_id "ENSP00000308485.6" ; transcript_id "DEPDC1B--PDE4D^ENST00000309641.10" ; transcript_name "PDE4D-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DHX35--ITCH HAVANA gene 1046 26430 . + . FI_gene_label "DHX35^ENSG00000101452.15" ; ID "DHX35--ITCH^DHX35^ENSG00000101452.15" ; ccdsid "CCDS13310.1" ; exon_id "ENSE00002216121.2" ; exon_number 1 ; gene_id "DHX35--ITCH^DHX35^ENSG00000101452.15" ; gene_name DHX35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032463.9" ; havana_transcript "OTTHUMT00000079212.3" ; hgnc_id "HGNC:15861" ; level 2 ; orig_coord_info "chr20,38962368,38962407,+" ; protein_id "ENSP00000252011.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX35--ITCH^ENST00000252011.8" ; transcript_name "DHX35-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHX35--ITCH HAVANA mRNA 1046 26430 . + . FI_gene_label "DHX35^ENSG00000101452.15" ; ID "DHX35--ITCH^ENST00000252011.8" ; Parent "DHX35--ITCH^DHX35^ENSG00000101452.15" ; ccdsid "CCDS13310.1" ; exon_id "ENSE00002216121.2" ; exon_number 1 ; gene_id "DHX35--ITCH^DHX35^ENSG00000101452.15" ; gene_name DHX35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032463.9" ; havana_transcript "OTTHUMT00000079212.3" ; hgnc_id "HGNC:15861" ; level 2 ; orig_coord_info "chr20,38962368,38962407,+" ; protein_id "ENSP00000252011.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHX35--ITCH^ENST00000252011.8" ; transcript_name "DHX35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DHX35--ITCH HAVANA gene 29504 64213 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "DHX35--ITCH^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "DHX35--ITCH^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "DHX35--ITCH^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHX35--ITCH HAVANA mRNA 29504 64213 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "DHX35--ITCH^ENST00000262650.10" ; Parent "DHX35--ITCH^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "DHX35--ITCH^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "DHX35--ITCH^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DIAPH1--GNPDA1 ENSEMBL gene 1001 31027 . + . FI_gene_label "DIAPH1^ENSG00000131504.17" ; ID "DIAPH1--GNPDA1^DIAPH1^ENSG00000131504.17" ; exon_id "ENSE00003715135.1" ; exon_number 2 ; gene_id "DIAPH1--GNPDA1^DIAPH1^ENSG00000131504.17" ; gene_name DIAPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149893.18" ; hgnc_id "HGNC:2876" ; level 3 ; orig_coord_info "chr5,141588224,141588235,-" ; protein_id "ENSP00000253811.7" ; tag basic appris_alternative_2 ; transcript_id "DIAPH1--GNPDA1^ENST00000253811.10" ; transcript_name "DIAPH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
DIAPH1--GNPDA1 ENSEMBL mRNA 1001 31027 . + . FI_gene_label "DIAPH1^ENSG00000131504.17" ; ID "DIAPH1--GNPDA1^ENST00000253811.10" ; Parent "DIAPH1--GNPDA1^DIAPH1^ENSG00000131504.17" ; exon_id "ENSE00003715135.1" ; exon_number 2 ; gene_id "DIAPH1--GNPDA1^DIAPH1^ENSG00000131504.17" ; gene_name DIAPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149893.18" ; hgnc_id "HGNC:2876" ; level 3 ; orig_coord_info "chr5,141588224,141588235,-" ; protein_id "ENSP00000253811.7" ; tag basic appris_alternative_2 ; transcript_id "DIAPH1--GNPDA1^ENST00000253811.10" ; transcript_name "DIAPH1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DIAPH1--GNPDA1 HAVANA gene 34048 42372 . + . FI_gene_label "GNPDA1^ENSG00000113552.16" ; ID "DIAPH1--GNPDA1^GNPDA1^ENSG00000113552.16" ; ccdsid "CCDS4272.1" ; exon_id "ENSE00003572009.1" ; exon_number 2 ; gene_id "DIAPH1--GNPDA1^GNPDA1^ENSG00000113552.16" ; gene_name GNPDA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129657.5" ; havana_transcript "OTTHUMT00000251857.2" ; hgnc_id "HGNC:4417" ; level 2 ; orig_coord_info "chr5,142011912,142012035,-" ; protein_id "ENSP00000311876.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DIAPH1--GNPDA1^ENST00000311337.11" ; transcript_name "GNPDA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DIAPH1--GNPDA1 HAVANA mRNA 34048 42372 . + . FI_gene_label "GNPDA1^ENSG00000113552.16" ; ID "DIAPH1--GNPDA1^ENST00000311337.11" ; Parent "DIAPH1--GNPDA1^GNPDA1^ENSG00000113552.16" ; ccdsid "CCDS4272.1" ; exon_id "ENSE00003572009.1" ; exon_number 2 ; gene_id "DIAPH1--GNPDA1^GNPDA1^ENSG00000113552.16" ; gene_name GNPDA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129657.5" ; havana_transcript "OTTHUMT00000251857.2" ; hgnc_id "HGNC:4417" ; level 2 ; orig_coord_info "chr5,142011912,142012035,-" ; protein_id "ENSP00000311876.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DIAPH1--GNPDA1^ENST00000311337.11" ; transcript_name "GNPDA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DSP--AL355499.1 HAVANA gene 1055 28163 . + . FI_gene_label "DSP^ENSG00000096696.14" ; ID "DSP--AL355499.1^DSP^ENSG00000096696.14" ; ccdsid "CCDS4501.1" ; exon_id "ENSE00002025723.2" ; exon_number 1 ; gene_id "DSP--AL355499.1^DSP^ENSG00000096696.14" ; gene_name DSP ; gene_type protein_coding ; havana_gene "OTTHUMG00000014212.5" ; havana_transcript "OTTHUMT00000039786.4" ; hgnc_id "HGNC:3052" ; level 2 ; orig_coord_info "chr6,7541916,7542085,+" ; protein_id "ENSP00000369129.3" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "DSP--AL355499.1^ENST00000379802.8" ; transcript_name "DSP-201" ; transcript_support_level 1 ; transcript_type protein_coding
DSP--AL355499.1 HAVANA mRNA 1055 28163 . + . FI_gene_label "DSP^ENSG00000096696.14" ; ID "DSP--AL355499.1^ENST00000379802.8" ; Parent "DSP--AL355499.1^DSP^ENSG00000096696.14" ; ccdsid "CCDS4501.1" ; exon_id "ENSE00002025723.2" ; exon_number 1 ; gene_id "DSP--AL355499.1^DSP^ENSG00000096696.14" ; gene_name DSP ; gene_type protein_coding ; havana_gene "OTTHUMG00000014212.5" ; havana_transcript "OTTHUMT00000039786.4" ; hgnc_id "HGNC:3052" ; level 2 ; orig_coord_info "chr6,7541916,7542085,+" ; protein_id "ENSP00000369129.3" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "DSP--AL355499.1^ENST00000379802.8" ; transcript_name "DSP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF2B5--AC092941.1 HAVANA gene 1328 2943 . + . FI_gene_label "EIF2B5^ENSG00000145191.15" ; ID "EIF2B5--AC092941.1^EIF2B5^ENSG00000145191.15" ; exon_id "ENSE00001741408.1" ; exon_number 1 ; gene_id "EIF2B5--AC092941.1^EIF2B5^ENSG00000145191.15" ; gene_name EIF2B5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156840.21" ; havana_transcript "OTTHUMT00000346170.2" ; hgnc_id "HGNC:3261" ; level 2 ; orig_coord_info "chr3,184135386,184135580,+" ; protein_id "ENSP00000414775.1" ; tag basic ; transcript_id "EIF2B5--AC092941.1^ENST00000432569.2" ; transcript_name "EIF2B5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF2B5--AC092941.1 HAVANA mRNA 1328 2943 . + . FI_gene_label "EIF2B5^ENSG00000145191.15" ; ID "EIF2B5--AC092941.1^ENST00000432569.2" ; Parent "EIF2B5--AC092941.1^EIF2B5^ENSG00000145191.15" ; exon_id "ENSE00001741408.1" ; exon_number 1 ; gene_id "EIF2B5--AC092941.1^EIF2B5^ENSG00000145191.15" ; gene_name EIF2B5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156840.21" ; havana_transcript "OTTHUMT00000346170.2" ; hgnc_id "HGNC:3261" ; level 2 ; orig_coord_info "chr3,184135386,184135580,+" ; protein_id "ENSP00000414775.1" ; tag basic ; transcript_id "EIF2B5--AC092941.1^ENST00000432569.2" ; transcript_name "EIF2B5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT1--SMAD2 HAVANA gene 22518 72260 . + . FI_gene_label "SMAD2^ENSG00000175387.16" ; ID "GALNT1--SMAD2^SMAD2^ENSG00000175387.16" ; ccdsid "CCDS11934.1" ; exon_id "ENSE00001191187.1" ; exon_number 2 ; gene_id "GALNT1--SMAD2^SMAD2^ENSG00000175387.16" ; gene_name SMAD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132652.5" ; havana_transcript "OTTHUMT00000255903.3" ; hgnc_id "HGNC:6768" ; level 2 ; orig_coord_info "chr18,47896521,47896756,-" ; protein_id "ENSP00000262160.6" ; tag basic MANE_Select CCDS ; transcript_id "GALNT1--SMAD2^ENST00000262160.11" ; transcript_name "SMAD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT1--SMAD2 HAVANA mRNA 22518 72260 . + . FI_gene_label "SMAD2^ENSG00000175387.16" ; ID "GALNT1--SMAD2^ENST00000262160.11" ; Parent "GALNT1--SMAD2^SMAD2^ENSG00000175387.16" ; ccdsid "CCDS11934.1" ; exon_id "ENSE00001191187.1" ; exon_number 2 ; gene_id "GALNT1--SMAD2^SMAD2^ENSG00000175387.16" ; gene_name SMAD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132652.5" ; havana_transcript "OTTHUMT00000255903.3" ; hgnc_id "HGNC:6768" ; level 2 ; orig_coord_info "chr18,47896521,47896756,-" ; protein_id "ENSP00000262160.6" ; tag basic MANE_Select CCDS ; transcript_id "GALNT1--SMAD2^ENST00000262160.11" ; transcript_name "SMAD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT1--SMAD2 HAVANA gene 3803 19030 . + . FI_gene_label "GALNT1^ENSG00000141429.13" ; ID "GALNT1--SMAD2^GALNT1^ENSG00000141429.13" ; ccdsid "CCDS11915.1" ; exon_id "ENSE00002786001.1" ; exon_number 1 ; gene_id "GALNT1--SMAD2^GALNT1^ENSG00000141429.13" ; gene_name GALNT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132567.5" ; havana_transcript "OTTHUMT00000255771.2" ; hgnc_id "HGNC:4123" ; level 2 ; orig_coord_info "chr18,35654663,35654801,+" ; protein_id "ENSP00000269195.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT1--SMAD2^ENST00000269195.5" ; transcript_name "GALNT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT1--SMAD2 HAVANA mRNA 3803 19030 . + . FI_gene_label "GALNT1^ENSG00000141429.13" ; ID "GALNT1--SMAD2^ENST00000269195.5" ; Parent "GALNT1--SMAD2^GALNT1^ENSG00000141429.13" ; ccdsid "CCDS11915.1" ; exon_id "ENSE00002786001.1" ; exon_number 1 ; gene_id "GALNT1--SMAD2^GALNT1^ENSG00000141429.13" ; gene_name GALNT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132567.5" ; havana_transcript "OTTHUMT00000255771.2" ; hgnc_id "HGNC:4123" ; level 2 ; orig_coord_info "chr18,35654663,35654801,+" ; protein_id "ENSP00000269195.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT1--SMAD2^ENST00000269195.5" ; transcript_name "GALNT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT1--ZBTB7C HAVANA gene 3803 19030 . + . FI_gene_label "GALNT1^ENSG00000141429.13" ; ID "GALNT1--ZBTB7C^GALNT1^ENSG00000141429.13" ; ccdsid "CCDS11915.1" ; exon_id "ENSE00002786001.1" ; exon_number 1 ; gene_id "GALNT1--ZBTB7C^GALNT1^ENSG00000141429.13" ; gene_name GALNT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132567.5" ; havana_transcript "OTTHUMT00000255771.2" ; hgnc_id "HGNC:4123" ; level 2 ; orig_coord_info "chr18,35654663,35654801,+" ; protein_id "ENSP00000269195.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT1--ZBTB7C^ENST00000269195.5" ; transcript_name "GALNT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT1--ZBTB7C HAVANA mRNA 3803 19030 . + . FI_gene_label "GALNT1^ENSG00000141429.13" ; ID "GALNT1--ZBTB7C^ENST00000269195.5" ; Parent "GALNT1--ZBTB7C^GALNT1^ENSG00000141429.13" ; ccdsid "CCDS11915.1" ; exon_id "ENSE00002786001.1" ; exon_number 1 ; gene_id "GALNT1--ZBTB7C^GALNT1^ENSG00000141429.13" ; gene_name GALNT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132567.5" ; havana_transcript "OTTHUMT00000255771.2" ; hgnc_id "HGNC:4123" ; level 2 ; orig_coord_info "chr18,35654663,35654801,+" ; protein_id "ENSP00000269195.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT1--ZBTB7C^ENST00000269195.5" ; transcript_name "GALNT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT1--ZBTB7C HAVANA gene 39422 50144 . + . FI_gene_label "ZBTB7C^ENSG00000184828.10" ; ID "GALNT1--ZBTB7C^ZBTB7C^ENSG00000184828.10" ; ccdsid "CCDS32830.1" ; exon_id "ENSE00001307737.3" ; exon_number 2 ; gene_id "GALNT1--ZBTB7C^ZBTB7C^ENSG00000184828.10" ; gene_name ZBTB7C ; gene_type protein_coding ; havana_gene "OTTHUMG00000180322.3" ; havana_transcript "OTTHUMT00000450730.1" ; hgnc_id "HGNC:31700" ; level 2 ; orig_coord_info "chr18,48039900,48041107,-" ; protein_id "ENSP00000439781.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "GALNT1--ZBTB7C^ENST00000535628.6" ; transcript_name "ZBTB7C-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT1--ZBTB7C HAVANA mRNA 39422 50144 . + . FI_gene_label "ZBTB7C^ENSG00000184828.10" ; ID "GALNT1--ZBTB7C^ENST00000535628.6" ; Parent "GALNT1--ZBTB7C^ZBTB7C^ENSG00000184828.10" ; ccdsid "CCDS32830.1" ; exon_id "ENSE00001307737.3" ; exon_number 2 ; gene_id "GALNT1--ZBTB7C^ZBTB7C^ENSG00000184828.10" ; gene_name ZBTB7C ; gene_type protein_coding ; havana_gene "OTTHUMG00000180322.3" ; havana_transcript "OTTHUMT00000450730.1" ; hgnc_id "HGNC:31700" ; level 2 ; orig_coord_info "chr18,48039900,48041107,-" ; protein_id "ENSP00000439781.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "GALNT1--ZBTB7C^ENST00000535628.6" ; transcript_name "ZBTB7C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT15--MBNL1 ENSEMBL gene 22981 45387 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "GALNT15--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "GALNT15--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "GALNT15--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GALNT15--MBNL1 ENSEMBL mRNA 22981 45387 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "GALNT15--MBNL1^ENST00000282486.10" ; Parent "GALNT15--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "GALNT15--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "GALNT15--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GALNT15--MBNL1 HAVANA gene 1001 17167 . + . FI_gene_label "GALNT15^ENSG00000131386.19" ; ID "GALNT15--MBNL1^GALNT15^ENSG00000131386.19" ; ccdsid "CCDS33711.1" ; exon_id "ENSE00001216745.8" ; exon_number 1 ; gene_id "GALNT15--MBNL1^GALNT15^ENSG00000131386.19" ; gene_name GALNT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156893.5" ; havana_transcript "OTTHUMT00000346483.3" ; hgnc_id "HGNC:21531" ; level 2 ; orig_coord_info "chr3,16175152,16175690,+" ; protein_id "ENSP00000344260.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GALNT15--MBNL1^ENST00000339732.10" ; transcript_name "GALNT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT15--MBNL1 HAVANA mRNA 1001 17167 . + . FI_gene_label "GALNT15^ENSG00000131386.19" ; ID "GALNT15--MBNL1^ENST00000339732.10" ; Parent "GALNT15--MBNL1^GALNT15^ENSG00000131386.19" ; ccdsid "CCDS33711.1" ; exon_id "ENSE00001216745.8" ; exon_number 1 ; gene_id "GALNT15--MBNL1^GALNT15^ENSG00000131386.19" ; gene_name GALNT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156893.5" ; havana_transcript "OTTHUMT00000346483.3" ; hgnc_id "HGNC:21531" ; level 2 ; orig_coord_info "chr3,16175152,16175690,+" ; protein_id "ENSP00000344260.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GALNT15--MBNL1^ENST00000339732.10" ; transcript_name "GALNT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--AC090946.1 HAVANA gene 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC090946.1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC090946.1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC090946.1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--AC090946.1 HAVANA mRNA 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC090946.1^ENST00000273221.8" ; Parent "IQSEC1--AC090946.1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC090946.1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC090946.1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--GALNT15 HAVANA gene 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--GALNT15^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--GALNT15^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--GALNT15^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--GALNT15 HAVANA mRNA 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--GALNT15^ENST00000273221.8" ; Parent "IQSEC1--GALNT15^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--GALNT15^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--GALNT15^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--GALNT15 HAVANA gene 36028 52194 . + . FI_gene_label "GALNT15^ENSG00000131386.19" ; ID "IQSEC1--GALNT15^GALNT15^ENSG00000131386.19" ; ccdsid "CCDS33711.1" ; exon_id "ENSE00001216745.8" ; exon_number 1 ; gene_id "IQSEC1--GALNT15^GALNT15^ENSG00000131386.19" ; gene_name GALNT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156893.5" ; havana_transcript "OTTHUMT00000346483.3" ; hgnc_id "HGNC:21531" ; level 2 ; orig_coord_info "chr3,16175152,16175690,+" ; protein_id "ENSP00000344260.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IQSEC1--GALNT15^ENST00000339732.10" ; transcript_name "GALNT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--GALNT15 HAVANA mRNA 36028 52194 . + . FI_gene_label "GALNT15^ENSG00000131386.19" ; ID "IQSEC1--GALNT15^ENST00000339732.10" ; Parent "IQSEC1--GALNT15^GALNT15^ENSG00000131386.19" ; ccdsid "CCDS33711.1" ; exon_id "ENSE00001216745.8" ; exon_number 1 ; gene_id "IQSEC1--GALNT15^GALNT15^ENSG00000131386.19" ; gene_name GALNT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156893.5" ; havana_transcript "OTTHUMT00000346483.3" ; hgnc_id "HGNC:21531" ; level 2 ; orig_coord_info "chr3,16175152,16175690,+" ; protein_id "ENSP00000344260.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IQSEC1--GALNT15^ENST00000339732.10" ; transcript_name "GALNT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--MBNL1 HAVANA gene 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--MBNL1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--MBNL1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--MBNL1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--MBNL1 HAVANA mRNA 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--MBNL1^ENST00000273221.8" ; Parent "IQSEC1--MBNL1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--MBNL1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--MBNL1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--MBNL1 ENSEMBL gene 37641 60047 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "IQSEC1--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "IQSEC1--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "IQSEC1--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
IQSEC1--MBNL1 ENSEMBL mRNA 37641 60047 . + . FI_gene_label "MBNL1^ENSG00000152601.17" ; ID "IQSEC1--MBNL1^ENST00000282486.10" ; Parent "IQSEC1--MBNL1^MBNL1^ENSG00000152601.17" ; ccdsid "CCDS3165.1" ; exon_id "ENSE00003572953.1" ; exon_number 2 ; gene_id "IQSEC1--MBNL1^MBNL1^ENSG00000152601.17" ; gene_name MBNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159163.4" ; hgnc_id "HGNC:6923" ; level 3 ; orig_coord_info "chr3,152300194,152300367,+" ; protein_id "ENSP00000282486.6" ; tag basic appris_principal_4 CCDS ; transcript_id "IQSEC1--MBNL1^ENST00000282486.10" ; transcript_name "MBNL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KLHDC2--SNTB1 HAVANA gene 1024 13268 . + . FI_gene_label "KLHDC2^ENSG00000165516.11" ; ID "KLHDC2--SNTB1^KLHDC2^ENSG00000165516.11" ; ccdsid "CCDS9693.1" ; exon_id "ENSE00001093727.8" ; exon_number 1 ; gene_id "KLHDC2--SNTB1^KLHDC2^ENSG00000165516.11" ; gene_name KLHDC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140288.5" ; havana_transcript "OTTHUMT00000276869.4" ; hgnc_id "HGNC:20231" ; level 2 ; orig_coord_info "chr14,49768469,49768621,+" ; protein_id "ENSP00000298307.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SNTB1^ENST00000298307.10" ; transcript_name "KLHDC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLHDC2--SNTB1 HAVANA mRNA 1024 13268 . + . FI_gene_label "KLHDC2^ENSG00000165516.11" ; ID "KLHDC2--SNTB1^ENST00000298307.10" ; Parent "KLHDC2--SNTB1^KLHDC2^ENSG00000165516.11" ; ccdsid "CCDS9693.1" ; exon_id "ENSE00001093727.8" ; exon_number 1 ; gene_id "KLHDC2--SNTB1^KLHDC2^ENSG00000165516.11" ; gene_name KLHDC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140288.5" ; havana_transcript "OTTHUMT00000276869.4" ; hgnc_id "HGNC:20231" ; level 2 ; orig_coord_info "chr14,49768469,49768621,+" ; protein_id "ENSP00000298307.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SNTB1^ENST00000298307.10" ; transcript_name "KLHDC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLHDC2--SNTB1 HAVANA gene 16269 32829 . + . FI_gene_label "SNTB1^ENSG00000172164.15" ; ID "KLHDC2--SNTB1^SNTB1^ENSG00000172164.15" ; ccdsid "CCDS6334.1" ; exon_id "ENSE00001522225.1" ; exon_number 2 ; gene_id "KLHDC2--SNTB1^SNTB1^ENSG00000172164.15" ; gene_name SNTB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165041.5" ; havana_transcript "OTTHUMT00000381535.1" ; hgnc_id "HGNC:11168" ; level 2 ; orig_coord_info "chr8,120811273,120811843,-" ; protein_id "ENSP00000378965.3" ; tag basic appris_principal_1 CCDS ; transcript_id "KLHDC2--SNTB1^ENST00000395601.7" ; transcript_name "SNTB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
KLHDC2--SNTB1 HAVANA mRNA 16269 32829 . + . FI_gene_label "SNTB1^ENSG00000172164.15" ; ID "KLHDC2--SNTB1^ENST00000395601.7" ; Parent "KLHDC2--SNTB1^SNTB1^ENSG00000172164.15" ; ccdsid "CCDS6334.1" ; exon_id "ENSE00001522225.1" ; exon_number 2 ; gene_id "KLHDC2--SNTB1^SNTB1^ENSG00000172164.15" ; gene_name SNTB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165041.5" ; havana_transcript "OTTHUMT00000381535.1" ; hgnc_id "HGNC:11168" ; level 2 ; orig_coord_info "chr8,120811273,120811843,-" ; protein_id "ENSP00000378965.3" ; tag basic appris_principal_1 CCDS ; transcript_id "KLHDC2--SNTB1^ENST00000395601.7" ; transcript_name "SNTB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KPNA6--KHDRBS1 HAVANA gene 23287 33200 . + . FI_gene_label "KHDRBS1^ENSG00000121774.18" ; ID "KPNA6--KHDRBS1^KHDRBS1^ENSG00000121774.18" ; ccdsid "CCDS350.1" ; exon_id "ENSE00001824447.2" ; exon_number 1 ; gene_id "KPNA6--KHDRBS1^KHDRBS1^ENSG00000121774.18" ; gene_name KHDRBS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003921.10" ; havana_transcript "OTTHUMT00000011199.5" ; hgnc_id "HGNC:18116" ; level 2 ; orig_coord_info "chr1,32013996,32014377,+" ; protein_id "ENSP00000313829.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA6--KHDRBS1^ENST00000327300.12" ; transcript_name "KHDRBS1-202" ; transcript_support_level 1 ; transcript_type protein_coding
KPNA6--KHDRBS1 HAVANA mRNA 23287 33200 . + . FI_gene_label "KHDRBS1^ENSG00000121774.18" ; ID "KPNA6--KHDRBS1^ENST00000327300.12" ; Parent "KPNA6--KHDRBS1^KHDRBS1^ENSG00000121774.18" ; ccdsid "CCDS350.1" ; exon_id "ENSE00001824447.2" ; exon_number 1 ; gene_id "KPNA6--KHDRBS1^KHDRBS1^ENSG00000121774.18" ; gene_name KHDRBS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003921.10" ; havana_transcript "OTTHUMT00000011199.5" ; hgnc_id "HGNC:18116" ; level 2 ; orig_coord_info "chr1,32013996,32014377,+" ; protein_id "ENSP00000313829.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA6--KHDRBS1^ENST00000327300.12" ; transcript_name "KHDRBS1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KPNA6--KHDRBS1 HAVANA gene 1001 20286 . + . FI_gene_label "KPNA6^ENSG00000025800.14" ; ID "KPNA6--KHDRBS1^KPNA6^ENSG00000025800.14" ; ccdsid "CCDS352.1" ; exon_id "ENSE00001836098.2" ; exon_number 1 ; gene_id "KPNA6--KHDRBS1^KPNA6^ENSG00000025800.14" ; gene_name KPNA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004333.6" ; havana_transcript "OTTHUMT00000012527.5" ; hgnc_id "HGNC:6399" ; level 2 ; orig_coord_info "chr1,32108131,32108134,+" ; protein_id "ENSP00000362728.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA6--KHDRBS1^ENST00000373625.8" ; transcript_name "KPNA6-201" ; transcript_support_level 1 ; transcript_type protein_coding
KPNA6--KHDRBS1 HAVANA mRNA 1001 20286 . + . FI_gene_label "KPNA6^ENSG00000025800.14" ; ID "KPNA6--KHDRBS1^ENST00000373625.8" ; Parent "KPNA6--KHDRBS1^KPNA6^ENSG00000025800.14" ; ccdsid "CCDS352.1" ; exon_id "ENSE00001836098.2" ; exon_number 1 ; gene_id "KPNA6--KHDRBS1^KPNA6^ENSG00000025800.14" ; gene_name KPNA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004333.6" ; havana_transcript "OTTHUMT00000012527.5" ; hgnc_id "HGNC:6399" ; level 2 ; orig_coord_info "chr1,32108131,32108134,+" ; protein_id "ENSP00000362728.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA6--KHDRBS1^ENST00000373625.8" ; transcript_name "KPNA6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--FGF12^ENST00000392452.3" ; Parent "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--FGF12^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--FGF12^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--FGF12 HAVANA gene 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
MB21D2--FGF12 HAVANA mRNA 9187 17567 . + . FI_gene_label "FGF12^ENSG00000114279.14" ; ID "MB21D2--FGF12^ENST00000418610.1" ; Parent "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; exon_id "ENSE00001698574.1" ; exon_number 1 ; gene_id "MB21D2--FGF12^FGF12^ENSG00000114279.14" ; gene_name FGF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156132.5" ; havana_transcript "OTTHUMT00000343163.2" ; hgnc_id "HGNC:3668" ; level 2 ; orig_coord_info "chr3,192727181,192727193,-" ; protein_id "ENSP00000395517.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "MB21D2--FGF12^ENST00000418610.1" ; transcript_name "FGF12-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--RTP2 HAVANA gene 8064 10409 . + . FI_gene_label "RTP2^ENSG00000198471.1" ; ID "MB21D2--RTP2^RTP2^ENSG00000198471.1" ; ccdsid "CCDS33911.1" ; exon_id "ENSE00001400393.1" ; exon_number 1 ; gene_id "MB21D2--RTP2^RTP2^ENSG00000198471.1" ; gene_name RTP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156458.1" ; havana_transcript "OTTHUMT00000344259.1" ; hgnc_id "HGNC:32486" ; level 2 ; orig_coord_info "chr3,187701965,187702128,-" ; protein_id "ENSP00000350976.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MB21D2--RTP2^ENST00000358241.1" ; transcript_name "RTP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--RTP2 HAVANA mRNA 8064 10409 . + . FI_gene_label "RTP2^ENSG00000198471.1" ; ID "MB21D2--RTP2^ENST00000358241.1" ; Parent "MB21D2--RTP2^RTP2^ENSG00000198471.1" ; ccdsid "CCDS33911.1" ; exon_id "ENSE00001400393.1" ; exon_number 1 ; gene_id "MB21D2--RTP2^RTP2^ENSG00000198471.1" ; gene_name RTP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156458.1" ; havana_transcript "OTTHUMT00000344259.1" ; hgnc_id "HGNC:32486" ; level 2 ; orig_coord_info "chr3,187701965,187702128,-" ; protein_id "ENSP00000350976.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MB21D2--RTP2^ENST00000358241.1" ; transcript_name "RTP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--RTP2 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--RTP2^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--RTP2^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--RTP2^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--RTP2 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--RTP2^ENST00000392452.3" ; Parent "MB21D2--RTP2^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--RTP2^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--RTP2^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECOM--LMCD1-AS1 ENSEMBL gene 8658 32731 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "MECOM--LMCD1-AS1^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "MECOM--LMCD1-AS1^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "MECOM--LMCD1-AS1^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
MECOM--LMCD1-AS1 ENSEMBL mRNA 8658 32731 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "MECOM--LMCD1-AS1^ENST00000264674.7" ; Parent "MECOM--LMCD1-AS1^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "MECOM--LMCD1-AS1^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "MECOM--LMCD1-AS1^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
MIR4713HG--GLDN HAVANA mRNA 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^ENST00000335449.11" ; Parent "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MTSS1--AC034114.2 HAVANA gene 1201 24737 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "MTSS1--AC034114.2^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "MTSS1--AC034114.2^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "MTSS1--AC034114.2^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MTSS1--AC034114.2 HAVANA mRNA 1201 24737 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "MTSS1--AC034114.2^ENST00000325064.9" ; Parent "MTSS1--AC034114.2^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "MTSS1--AC034114.2^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "MTSS1--AC034114.2^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NBPF19--NOTCH2NLA HAVANA gene 80910 86033 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NBPF19--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NBPF19--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NBPF19--NOTCH2NLA^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
NBPF19--NOTCH2NLA HAVANA mRNA 80910 86033 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NBPF19--NOTCH2NLA^ENST00000362074.7" ; Parent "NBPF19--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NBPF19--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NBPF19--NOTCH2NLA^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF19--NOTCH2NLA ENSEMBL gene 2786 77173 . + . FI_gene_label "NBPF19^ENSG00000271383.7" ; ID "NBPF19--NOTCH2NLA^NBPF19^ENSG00000271383.7" ; exon_id "ENSE00003714963.1" ; exon_number 1 ; gene_id "NBPF19--NOTCH2NLA^NBPF19^ENSG00000271383.7" ; gene_name NBPF19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013900.12" ; hgnc_id "HGNC:31999" ; level 3 ; orig_coord_info "chr1,149477977,149478047,+" ; protein_id "ENSP00000358229.7" ; tag basic ; transcript_id "NBPF19--NOTCH2NLA^ENST00000369227.7" ; transcript_name "NBPF19-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF19--NOTCH2NLA ENSEMBL mRNA 2786 77173 . + . FI_gene_label "NBPF19^ENSG00000271383.7" ; ID "NBPF19--NOTCH2NLA^ENST00000369227.7" ; Parent "NBPF19--NOTCH2NLA^NBPF19^ENSG00000271383.7" ; exon_id "ENSE00003714963.1" ; exon_number 1 ; gene_id "NBPF19--NOTCH2NLA^NBPF19^ENSG00000271383.7" ; gene_name NBPF19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013900.12" ; hgnc_id "HGNC:31999" ; level 3 ; orig_coord_info "chr1,149477977,149478047,+" ; protein_id "ENSP00000358229.7" ; tag basic ; transcript_id "NBPF19--NOTCH2NLA^ENST00000369227.7" ; transcript_name "NBPF19-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NCOA2--CALB1 HAVANA gene 38964 50743 . + . FI_gene_label "CALB1^ENSG00000104327.7" ; ID "NCOA2--CALB1^CALB1^ENSG00000104327.7" ; ccdsid "CCDS6251.1" ; exon_id "ENSE00001228561.3" ; exon_number 1 ; gene_id "NCOA2--CALB1^CALB1^ENSG00000104327.7" ; gene_name CALB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134314.4" ; havana_transcript "OTTHUMT00000259338.2" ; hgnc_id "HGNC:1434" ; level 2 ; orig_coord_info "chr8,90082619,90082697,-" ; protein_id "ENSP00000265431.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCOA2--CALB1^ENST00000265431.7" ; transcript_name "CALB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA2--CALB1 HAVANA mRNA 38964 50743 . + . FI_gene_label "CALB1^ENSG00000104327.7" ; ID "NCOA2--CALB1^ENST00000265431.7" ; Parent "NCOA2--CALB1^CALB1^ENSG00000104327.7" ; ccdsid "CCDS6251.1" ; exon_id "ENSE00001228561.3" ; exon_number 1 ; gene_id "NCOA2--CALB1^CALB1^ENSG00000104327.7" ; gene_name CALB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134314.4" ; havana_transcript "OTTHUMT00000259338.2" ; hgnc_id "HGNC:1434" ; level 2 ; orig_coord_info "chr8,90082619,90082697,-" ; protein_id "ENSP00000265431.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCOA2--CALB1^ENST00000265431.7" ; transcript_name "CALB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA2--CALB1 HAVANA gene 1001 33498 . + . FI_gene_label "NCOA2^ENSG00000140396.13" ; ID "NCOA2--CALB1^NCOA2^ENSG00000140396.13" ; ccdsid "CCDS47872.1" ; exon_id "ENSE00001090226.1" ; exon_number 3 ; gene_id "NCOA2--CALB1^NCOA2^ENSG00000140396.13" ; gene_name NCOA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164671.4" ; havana_transcript "OTTHUMT00000379696.2" ; hgnc_id "HGNC:7669" ; level 2 ; orig_coord_info "chr8,70216660,70216745,-" ; protein_id "ENSP00000399968.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCOA2--CALB1^ENST00000452400.7" ; transcript_name "NCOA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA2--CALB1 HAVANA mRNA 1001 33498 . + . FI_gene_label "NCOA2^ENSG00000140396.13" ; ID "NCOA2--CALB1^ENST00000452400.7" ; Parent "NCOA2--CALB1^NCOA2^ENSG00000140396.13" ; ccdsid "CCDS47872.1" ; exon_id "ENSE00001090226.1" ; exon_number 3 ; gene_id "NCOA2--CALB1^NCOA2^ENSG00000140396.13" ; gene_name NCOA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164671.4" ; havana_transcript "OTTHUMT00000379696.2" ; hgnc_id "HGNC:7669" ; level 2 ; orig_coord_info "chr8,70216660,70216745,-" ; protein_id "ENSP00000399968.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCOA2--CALB1^ENST00000452400.7" ; transcript_name "NCOA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SNTB1 HAVANA gene 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SNTB1^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SNTB1^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SNTB1^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEMF--SNTB1 HAVANA mRNA 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SNTB1^ENST00000298310.10" ; Parent "NEMF--SNTB1^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SNTB1^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SNTB1^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SNTB1 HAVANA gene 37522 54082 . + . FI_gene_label "SNTB1^ENSG00000172164.15" ; ID "NEMF--SNTB1^SNTB1^ENSG00000172164.15" ; ccdsid "CCDS6334.1" ; exon_id "ENSE00001522225.1" ; exon_number 2 ; gene_id "NEMF--SNTB1^SNTB1^ENSG00000172164.15" ; gene_name SNTB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165041.5" ; havana_transcript "OTTHUMT00000381535.1" ; hgnc_id "HGNC:11168" ; level 2 ; orig_coord_info "chr8,120811273,120811843,-" ; protein_id "ENSP00000378965.3" ; tag basic appris_principal_1 CCDS ; transcript_id "NEMF--SNTB1^ENST00000395601.7" ; transcript_name "SNTB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEMF--SNTB1 HAVANA mRNA 37522 54082 . + . FI_gene_label "SNTB1^ENSG00000172164.15" ; ID "NEMF--SNTB1^ENST00000395601.7" ; Parent "NEMF--SNTB1^SNTB1^ENSG00000172164.15" ; ccdsid "CCDS6334.1" ; exon_id "ENSE00001522225.1" ; exon_number 2 ; gene_id "NEMF--SNTB1^SNTB1^ENSG00000172164.15" ; gene_name SNTB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165041.5" ; havana_transcript "OTTHUMT00000381535.1" ; hgnc_id "HGNC:11168" ; level 2 ; orig_coord_info "chr8,120811273,120811843,-" ; protein_id "ENSP00000378965.3" ; tag basic appris_principal_1 CCDS ; transcript_id "NEMF--SNTB1^ENST00000395601.7" ; transcript_name "SNTB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PBRM1--WDR82 HAVANA gene 4606 39279 . + . FI_gene_label "PBRM1^ENSG00000163939.18" ; ID "PBRM1--WDR82^PBRM1^ENSG00000163939.18" ; exon_id "ENSE00001899954.1" ; exon_number 1 ; gene_id "PBRM1--WDR82^PBRM1^ENSG00000163939.18" ; gene_name PBRM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152663.3" ; havana_transcript "OTTHUMT00000327232.1" ; hgnc_id "HGNC:30064" ; level 2 ; orig_coord_info "chr3,52679574,52679711,-" ; protein_id "ENSP00000296302.7" ; tag basic appris_alternative_2 ; transcript_id "PBRM1--WDR82^ENST00000296302.11" ; transcript_name "PBRM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PBRM1--WDR82 HAVANA mRNA 4606 39279 . + . FI_gene_label "PBRM1^ENSG00000163939.18" ; ID "PBRM1--WDR82^ENST00000296302.11" ; Parent "PBRM1--WDR82^PBRM1^ENSG00000163939.18" ; exon_id "ENSE00001899954.1" ; exon_number 1 ; gene_id "PBRM1--WDR82^PBRM1^ENSG00000163939.18" ; gene_name PBRM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152663.3" ; havana_transcript "OTTHUMT00000327232.1" ; hgnc_id "HGNC:30064" ; level 2 ; orig_coord_info "chr3,52679574,52679711,-" ; protein_id "ENSP00000296302.7" ; tag basic appris_alternative_2 ; transcript_id "PBRM1--WDR82^ENST00000296302.11" ; transcript_name "PBRM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PBRM1--WDR82 HAVANA gene 47170 58994 . + . FI_gene_label "WDR82^ENSG00000164091.12" ; ID "PBRM1--WDR82^WDR82^ENSG00000164091.12" ; ccdsid "CCDS2851.2" ; exon_id "ENSE00001498298.3" ; exon_number 1 ; gene_id "PBRM1--WDR82^WDR82^ENSG00000164091.12" ; gene_name WDR82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150391.4" ; havana_transcript "OTTHUMT00000317919.2" ; hgnc_id "HGNC:28826" ; level 2 ; orig_coord_info "chr3,52278201,52278361,-" ; protein_id "ENSP00000296490.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PBRM1--WDR82^ENST00000296490.8" ; transcript_name "WDR82-201" ; transcript_support_level 1 ; transcript_type protein_coding
PBRM1--WDR82 HAVANA mRNA 47170 58994 . + . FI_gene_label "WDR82^ENSG00000164091.12" ; ID "PBRM1--WDR82^ENST00000296490.8" ; Parent "PBRM1--WDR82^WDR82^ENSG00000164091.12" ; ccdsid "CCDS2851.2" ; exon_id "ENSE00001498298.3" ; exon_number 1 ; gene_id "PBRM1--WDR82^WDR82^ENSG00000164091.12" ; gene_name WDR82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150391.4" ; havana_transcript "OTTHUMT00000317919.2" ; hgnc_id "HGNC:28826" ; level 2 ; orig_coord_info "chr3,52278201,52278361,-" ; protein_id "ENSP00000296490.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PBRM1--WDR82^ENST00000296490.8" ; transcript_name "WDR82-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PREX1--CPNE1 HAVANA gene 49017 55139 . + . FI_gene_label "CPNE1^ENSG00000214078.13" ; ID "PREX1--CPNE1^CPNE1^ENSG00000214078.13" ; ccdsid "CCDS46595.1" ; exon_id "ENSE00001237776.5" ; exon_number 1 ; gene_id "PREX1--CPNE1^CPNE1^ENSG00000214078.13" ; gene_name CPNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032356.33" ; havana_transcript "OTTHUMT00000078910.2" ; hgnc_id "HGNC:2314" ; level 2 ; orig_coord_info "chr20,35653528,35653542,-" ; protein_id "ENSP00000317257.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "PREX1--CPNE1^ENST00000317677.9" ; transcript_name "CPNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PREX1--CPNE1 HAVANA mRNA 49017 55139 . + . FI_gene_label "CPNE1^ENSG00000214078.13" ; ID "PREX1--CPNE1^ENST00000317677.9" ; Parent "PREX1--CPNE1^CPNE1^ENSG00000214078.13" ; ccdsid "CCDS46595.1" ; exon_id "ENSE00001237776.5" ; exon_number 1 ; gene_id "PREX1--CPNE1^CPNE1^ENSG00000214078.13" ; gene_name CPNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032356.33" ; havana_transcript "OTTHUMT00000078910.2" ; hgnc_id "HGNC:2314" ; level 2 ; orig_coord_info "chr20,35653528,35653542,-" ; protein_id "ENSP00000317257.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "PREX1--CPNE1^ENST00000317677.9" ; transcript_name "CPNE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PREX1--CPNE1 HAVANA gene 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--CPNE1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--CPNE1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--CPNE1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PREX1--CPNE1 HAVANA mRNA 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--CPNE1^ENST00000371941.4" ; Parent "PREX1--CPNE1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--CPNE1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--CPNE1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP10--PSKH1 HAVANA gene 23126 30118 . + . FI_gene_label "PSKH1^ENSG00000159792.10" ; ID "RANBP10--PSKH1^PSKH1^ENSG00000159792.10" ; ccdsid "CCDS10851.1" ; exon_id "ENSE00001047801.1" ; exon_number 2 ; gene_id "RANBP10--PSKH1^PSKH1^ENSG00000159792.10" ; gene_name PSKH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137548.8" ; havana_transcript "OTTHUMT00000268882.4" ; hgnc_id "HGNC:9529" ; level 2 ; orig_coord_info "chr16,67908750,67909706,+" ; protein_id "ENSP00000291041.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP10--PSKH1^ENST00000291041.6" ; transcript_name "PSKH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP10--PSKH1 HAVANA mRNA 23126 30118 . + . FI_gene_label "PSKH1^ENSG00000159792.10" ; ID "RANBP10--PSKH1^ENST00000291041.6" ; Parent "RANBP10--PSKH1^PSKH1^ENSG00000159792.10" ; ccdsid "CCDS10851.1" ; exon_id "ENSE00001047801.1" ; exon_number 2 ; gene_id "RANBP10--PSKH1^PSKH1^ENSG00000159792.10" ; gene_name PSKH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137548.8" ; havana_transcript "OTTHUMT00000268882.4" ; hgnc_id "HGNC:9529" ; level 2 ; orig_coord_info "chr16,67908750,67909706,+" ; protein_id "ENSP00000291041.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP10--PSKH1^ENST00000291041.6" ; transcript_name "PSKH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP10--PSKH1 HAVANA gene 1093 20125 . + . FI_gene_label "RANBP10^ENSG00000141084.11" ; ID "RANBP10--PSKH1^RANBP10^ENSG00000141084.11" ; ccdsid "CCDS32469.1" ; exon_id "ENSE00003616976.1" ; exon_number 1 ; gene_id "RANBP10--PSKH1^RANBP10^ENSG00000141084.11" ; gene_name RANBP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184044.5" ; havana_transcript "OTTHUMT00000467896.4" ; hgnc_id "HGNC:29285" ; level 2 ; orig_coord_info "chr16,67806302,67806536,-" ; protein_id "ENSP00000316589.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RANBP10--PSKH1^ENST00000317506.8" ; transcript_name "RANBP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP10--PSKH1 HAVANA mRNA 1093 20125 . + . FI_gene_label "RANBP10^ENSG00000141084.11" ; ID "RANBP10--PSKH1^ENST00000317506.8" ; Parent "RANBP10--PSKH1^RANBP10^ENSG00000141084.11" ; ccdsid "CCDS32469.1" ; exon_id "ENSE00003616976.1" ; exon_number 1 ; gene_id "RANBP10--PSKH1^RANBP10^ENSG00000141084.11" ; gene_name RANBP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184044.5" ; havana_transcript "OTTHUMT00000467896.4" ; hgnc_id "HGNC:29285" ; level 2 ; orig_coord_info "chr16,67806302,67806536,-" ; protein_id "ENSP00000316589.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RANBP10--PSKH1^ENST00000317506.8" ; transcript_name "RANBP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RARA--PKIA HAVANA gene 1001 18471 . + . FI_gene_label "RARA^ENSG00000131759.18" ; ID "RARA--PKIA^RARA^ENSG00000131759.18" ; ccdsid "CCDS11366.1" ; exon_id "ENSE00001422265.1" ; exon_number 2 ; gene_id "RARA--PKIA^RARA^ENSG00000131759.18" ; gene_name RARA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133328.6" ; havana_transcript "OTTHUMT00000257136.3" ; hgnc_id "HGNC:9864" ; level 2 ; orig_coord_info "chr17,40331219,40331396,+" ; protein_id "ENSP00000254066.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "RARA--PKIA^ENST00000254066.10" ; transcript_name "RARA-201" ; transcript_support_level 1 ; transcript_type protein_coding
RARA--PKIA HAVANA mRNA 1001 18471 . + . FI_gene_label "RARA^ENSG00000131759.18" ; ID "RARA--PKIA^ENST00000254066.10" ; Parent "RARA--PKIA^RARA^ENSG00000131759.18" ; ccdsid "CCDS11366.1" ; exon_id "ENSE00001422265.1" ; exon_number 2 ; gene_id "RARA--PKIA^RARA^ENSG00000131759.18" ; gene_name RARA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133328.6" ; havana_transcript "OTTHUMT00000257136.3" ; hgnc_id "HGNC:9864" ; level 2 ; orig_coord_info "chr17,40331219,40331396,+" ; protein_id "ENSP00000254066.5" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "RARA--PKIA^ENST00000254066.10" ; transcript_name "RARA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RARA--PKIA HAVANA gene 21487 27404 . + . FI_gene_label "PKIA^ENSG00000171033.13" ; ID "RARA--PKIA^PKIA^ENSG00000171033.13" ; ccdsid "CCDS6222.1" ; exon_id "ENSE00001167467.3" ; exon_number 2 ; gene_id "RARA--PKIA^PKIA^ENSG00000171033.13" ; gene_name PKIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000164618.2" ; havana_transcript "OTTHUMT00000379421.1" ; hgnc_id "HGNC:9017" ; level 2 ; orig_coord_info "chr8,78598385,78598535,+" ; protein_id "ENSP00000336552.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RARA--PKIA^ENST00000352966.9" ; transcript_name "PKIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
RARA--PKIA HAVANA mRNA 21487 27404 . + . FI_gene_label "PKIA^ENSG00000171033.13" ; ID "RARA--PKIA^ENST00000352966.9" ; Parent "RARA--PKIA^PKIA^ENSG00000171033.13" ; ccdsid "CCDS6222.1" ; exon_id "ENSE00001167467.3" ; exon_number 2 ; gene_id "RARA--PKIA^PKIA^ENSG00000171033.13" ; gene_name PKIA ; gene_type protein_coding ; havana_gene "OTTHUMG00000164618.2" ; havana_transcript "OTTHUMT00000379421.1" ; hgnc_id "HGNC:9017" ; level 2 ; orig_coord_info "chr8,78598385,78598535,+" ; protein_id "ENSP00000336552.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RARA--PKIA^ENST00000352966.9" ; transcript_name "PKIA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RARS2--DCUN1D4 HAVANA gene 23680 46908 . + . FI_gene_label "DCUN1D4^ENSG00000109184.15" ; ID "RARS2--DCUN1D4^DCUN1D4^ENSG00000109184.15" ; ccdsid "CCDS33982.1" ; exon_id "ENSE00003587175.1" ; exon_number 1 ; gene_id "RARS2--DCUN1D4^DCUN1D4^ENSG00000109184.15" ; gene_name DCUN1D4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128700.8" ; havana_transcript "OTTHUMT00000250599.3" ; hgnc_id "HGNC:28998" ; level 2 ; orig_coord_info "chr4,51843243,51843267,+" ; protein_id "ENSP00000334625.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--DCUN1D4^ENST00000334635.10" ; transcript_name "DCUN1D4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RARS2--DCUN1D4 HAVANA mRNA 23680 46908 . + . FI_gene_label "DCUN1D4^ENSG00000109184.15" ; ID "RARS2--DCUN1D4^ENST00000334635.10" ; Parent "RARS2--DCUN1D4^DCUN1D4^ENSG00000109184.15" ; ccdsid "CCDS33982.1" ; exon_id "ENSE00003587175.1" ; exon_number 1 ; gene_id "RARS2--DCUN1D4^DCUN1D4^ENSG00000109184.15" ; gene_name DCUN1D4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128700.8" ; havana_transcript "OTTHUMT00000250599.3" ; hgnc_id "HGNC:28998" ; level 2 ; orig_coord_info "chr4,51843243,51843267,+" ; protein_id "ENSP00000334625.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--DCUN1D4^ENST00000334635.10" ; transcript_name "DCUN1D4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RARS2--DCUN1D4 HAVANA gene 1001 20526 . + . FI_gene_label "RARS2^ENSG00000146282.18" ; ID "RARS2--DCUN1D4^RARS2^ENSG00000146282.18" ; ccdsid "CCDS5011.1" ; exon_id "ENSE00001923823.2" ; exon_number 1 ; gene_id "RARS2--DCUN1D4^RARS2^ENSG00000146282.18" ; gene_name RARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015178.4" ; havana_transcript "OTTHUMT00000041448.2" ; hgnc_id "HGNC:21406" ; level 2 ; orig_coord_info "chr6,87589922,87589957,-" ; protein_id "ENSP00000358549.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--DCUN1D4^ENST00000369536.10" ; transcript_name "RARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RARS2--DCUN1D4 HAVANA mRNA 1001 20526 . + . FI_gene_label "RARS2^ENSG00000146282.18" ; ID "RARS2--DCUN1D4^ENST00000369536.10" ; Parent "RARS2--DCUN1D4^RARS2^ENSG00000146282.18" ; ccdsid "CCDS5011.1" ; exon_id "ENSE00001923823.2" ; exon_number 1 ; gene_id "RARS2--DCUN1D4^RARS2^ENSG00000146282.18" ; gene_name RARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015178.4" ; havana_transcript "OTTHUMT00000041448.2" ; hgnc_id "HGNC:21406" ; level 2 ; orig_coord_info "chr6,87589922,87589957,-" ; protein_id "ENSP00000358549.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--DCUN1D4^ENST00000369536.10" ; transcript_name "RARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RARS2--SNX18P25 HAVANA gene 1001 20526 . + . FI_gene_label "RARS2^ENSG00000146282.18" ; ID "RARS2--SNX18P25^RARS2^ENSG00000146282.18" ; ccdsid "CCDS5011.1" ; exon_id "ENSE00001923823.2" ; exon_number 1 ; gene_id "RARS2--SNX18P25^RARS2^ENSG00000146282.18" ; gene_name RARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015178.4" ; havana_transcript "OTTHUMT00000041448.2" ; hgnc_id "HGNC:21406" ; level 2 ; orig_coord_info "chr6,87589922,87589957,-" ; protein_id "ENSP00000358549.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--SNX18P25^ENST00000369536.10" ; transcript_name "RARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RARS2--SNX18P25 HAVANA mRNA 1001 20526 . + . FI_gene_label "RARS2^ENSG00000146282.18" ; ID "RARS2--SNX18P25^ENST00000369536.10" ; Parent "RARS2--SNX18P25^RARS2^ENSG00000146282.18" ; ccdsid "CCDS5011.1" ; exon_id "ENSE00001923823.2" ; exon_number 1 ; gene_id "RARS2--SNX18P25^RARS2^ENSG00000146282.18" ; gene_name RARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015178.4" ; havana_transcript "OTTHUMT00000041448.2" ; hgnc_id "HGNC:21406" ; level 2 ; orig_coord_info "chr6,87589922,87589957,-" ; protein_id "ENSP00000358549.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RARS2--SNX18P25^ENST00000369536.10" ; transcript_name "RARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPTOR--RNF213 HAVANA gene 1020 46432 . + . FI_gene_label "RPTOR^ENSG00000141564.15" ; ID "RPTOR--RNF213^RPTOR^ENSG00000141564.15" ; ccdsid "CCDS11773.1" ; exon_id "ENSE00002682664.2" ; exon_number 1 ; gene_id "RPTOR--RNF213^RPTOR^ENSG00000141564.15" ; gene_name RPTOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000177622.4" ; havana_transcript "OTTHUMT00000438125.2" ; hgnc_id "HGNC:30287" ; level 2 ; orig_coord_info "chr17,80545630,80545791,+" ; protein_id "ENSP00000307272.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPTOR--RNF213^ENST00000306801.8" ; transcript_name "RPTOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPTOR--RNF213 HAVANA mRNA 1020 46432 . + . FI_gene_label "RPTOR^ENSG00000141564.15" ; ID "RPTOR--RNF213^ENST00000306801.8" ; Parent "RPTOR--RNF213^RPTOR^ENSG00000141564.15" ; ccdsid "CCDS11773.1" ; exon_id "ENSE00002682664.2" ; exon_number 1 ; gene_id "RPTOR--RNF213^RPTOR^ENSG00000141564.15" ; gene_name RPTOR ; gene_type protein_coding ; havana_gene "OTTHUMG00000177622.4" ; havana_transcript "OTTHUMT00000438125.2" ; hgnc_id "HGNC:30287" ; level 2 ; orig_coord_info "chr17,80545630,80545791,+" ; protein_id "ENSP00000307272.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPTOR--RNF213^ENST00000306801.8" ; transcript_name "RPTOR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPTOR--RNF213 HAVANA gene 49440 70354 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RPTOR--RNF213^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RPTOR--RNF213^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RPTOR--RNF213^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPTOR--RNF213 HAVANA mRNA 49440 70354 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RPTOR--RNF213^ENST00000319921.4" ; Parent "RPTOR--RNF213^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RPTOR--RNF213^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RPTOR--RNF213^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--MRPL13 HAVANA gene 32635 42177 . + . FI_gene_label "MRPL13^ENSG00000172172.8" ; ID "SAMD12--MRPL13^MRPL13^ENSG00000172172.8" ; ccdsid "CCDS6332.1" ; exon_id "ENSE00002097336.2" ; exon_number 1 ; gene_id "SAMD12--MRPL13^MRPL13^ENSG00000172172.8" ; gene_name MRPL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165039.3" ; havana_transcript "OTTHUMT00000381523.2" ; hgnc_id "HGNC:14278" ; level 2 ; orig_coord_info "chr8,120445068,120445094,-" ; protein_id "ENSP00000306548.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--MRPL13^ENST00000306185.8" ; transcript_name "MRPL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--MRPL13 HAVANA mRNA 32635 42177 . + . FI_gene_label "MRPL13^ENSG00000172172.8" ; ID "SAMD12--MRPL13^ENST00000306185.8" ; Parent "SAMD12--MRPL13^MRPL13^ENSG00000172172.8" ; ccdsid "CCDS6332.1" ; exon_id "ENSE00002097336.2" ; exon_number 1 ; gene_id "SAMD12--MRPL13^MRPL13^ENSG00000172172.8" ; gene_name MRPL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165039.3" ; havana_transcript "OTTHUMT00000381523.2" ; hgnc_id "HGNC:14278" ; level 2 ; orig_coord_info "chr8,120445068,120445094,-" ; protein_id "ENSP00000306548.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--MRPL13^ENST00000306185.8" ; transcript_name "MRPL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--MRPL13 HAVANA gene 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--MRPL13^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--MRPL13^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--MRPL13^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--MRPL13 HAVANA mRNA 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--MRPL13^ENST00000314727.9" ; Parent "SAMD12--MRPL13^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--MRPL13^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--MRPL13^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SERPINB8--FAM157C HAVANA gene 3723 9406 . + . FI_gene_label "SERPINB8^ENSG00000166401.15" ; ID "SERPINB8--FAM157C^SERPINB8^ENSG00000166401.15" ; exon_id "ENSE00001771738.1" ; exon_number 1 ; gene_id "SERPINB8--FAM157C^SERPINB8^ENSG00000166401.15" ; gene_name SERPINB8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000060596.9" ; havana_transcript "OTTHUMT00000134016.2" ; hgnc_id "HGNC:8952" ; level 1 ; orig_coord_info "chr18,63979808,63979938,+" ; protein_id "ENSP00000295211.5" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SERPINB8--FAM157C^ENST00000295211.5" ; transcript_name "SERPINB8-201" ; transcript_support_level 3 ; transcript_type protein_coding
SERPINB8--FAM157C HAVANA mRNA 3723 9406 . + . FI_gene_label "SERPINB8^ENSG00000166401.15" ; ID "SERPINB8--FAM157C^ENST00000295211.5" ; Parent "SERPINB8--FAM157C^SERPINB8^ENSG00000166401.15" ; exon_id "ENSE00001771738.1" ; exon_number 1 ; gene_id "SERPINB8--FAM157C^SERPINB8^ENSG00000166401.15" ; gene_name SERPINB8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000060596.9" ; havana_transcript "OTTHUMT00000134016.2" ; hgnc_id "HGNC:8952" ; level 1 ; orig_coord_info "chr18,63979808,63979938,+" ; protein_id "ENSP00000295211.5" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SERPINB8--FAM157C^ENST00000295211.5" ; transcript_name "SERPINB8-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
SLC45A4--LINC00824 HAVANA gene 5122 14614 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "SLC45A4--LINC00824^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "SLC45A4--LINC00824^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC45A4--LINC00824^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC45A4--LINC00824 HAVANA mRNA 5122 14614 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "SLC45A4--LINC00824^ENST00000024061.7" ; Parent "SLC45A4--LINC00824^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "SLC45A4--LINC00824^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC45A4--LINC00824^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STAU1--TOX2 HAVANA gene 1001 19003 . + . FI_gene_label "STAU1^ENSG00000124214.21" ; ID "STAU1--TOX2^STAU1^ENSG00000124214.21" ; ccdsid "CCDS13415.1" ; exon_id "ENSE00003680667.1" ; exon_number 4 ; gene_id "STAU1--TOX2^STAU1^ENSG00000124214.21" ; gene_name STAU1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032691.5" ; havana_transcript "OTTHUMT00000079636.2" ; hgnc_id "HGNC:11370" ; level 2 ; orig_coord_info "chr20,49153933,49154033,-" ; protein_id "ENSP00000345425.6" ; tag alternative_5_UTR basic appris_alternative_2 CCDS ; transcript_id "STAU1--TOX2^ENST00000340954.11" ; transcript_name "STAU1-201" ; transcript_support_level 5 ; transcript_type protein_coding
STAU1--TOX2 HAVANA mRNA 1001 19003 . + . FI_gene_label "STAU1^ENSG00000124214.21" ; ID "STAU1--TOX2^ENST00000340954.11" ; Parent "STAU1--TOX2^STAU1^ENSG00000124214.21" ; ccdsid "CCDS13415.1" ; exon_id "ENSE00003680667.1" ; exon_number 4 ; gene_id "STAU1--TOX2^STAU1^ENSG00000124214.21" ; gene_name STAU1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032691.5" ; havana_transcript "OTTHUMT00000079636.2" ; hgnc_id "HGNC:11370" ; level 2 ; orig_coord_info "chr20,49153933,49154033,-" ; protein_id "ENSP00000345425.6" ; tag alternative_5_UTR basic appris_alternative_2 CCDS ; transcript_id "STAU1--TOX2^ENST00000340954.11" ; transcript_name "STAU1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
STAU1--TOX2 HAVANA gene 22188 36898 . + . FI_gene_label "TOX2^ENSG00000124191.18" ; ID "STAU1--TOX2^TOX2^ENSG00000124191.18" ; ccdsid "CCDS46603.1" ; exon_id "ENSE00001771384.2" ; exon_number 1 ; gene_id "STAU1--TOX2^TOX2^ENSG00000124191.18" ; gene_name TOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032517.6" ; havana_transcript "OTTHUMT00000079331.3" ; hgnc_id "HGNC:16095" ; level 2 ; orig_coord_info "chr20,43914892,43914990,+" ; protein_id "ENSP00000344724.3" ; tag not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAU1--TOX2^ENST00000341197.9" ; transcript_name "TOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
STAU1--TOX2 HAVANA mRNA 22188 36898 . + . FI_gene_label "TOX2^ENSG00000124191.18" ; ID "STAU1--TOX2^ENST00000341197.9" ; Parent "STAU1--TOX2^TOX2^ENSG00000124191.18" ; ccdsid "CCDS46603.1" ; exon_id "ENSE00001771384.2" ; exon_number 1 ; gene_id "STAU1--TOX2^TOX2^ENSG00000124191.18" ; gene_name TOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032517.6" ; havana_transcript "OTTHUMT00000079331.3" ; hgnc_id "HGNC:16095" ; level 2 ; orig_coord_info "chr20,43914892,43914990,+" ; protein_id "ENSP00000344724.3" ; tag not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAU1--TOX2^ENST00000341197.9" ; transcript_name "TOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SUMF1--LRRFIP2 HAVANA gene 1005 10918 . + . FI_gene_label "SUMF1^ENSG00000144455.14" ; ID "SUMF1--LRRFIP2^SUMF1^ENSG00000144455.14" ; ccdsid "CCDS2564.1" ; exon_id "ENSE00001939829.1" ; exon_number 1 ; gene_id "SUMF1--LRRFIP2^SUMF1^ENSG00000144455.14" ; gene_name SUMF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090269.6" ; havana_transcript "OTTHUMT00000206591.3" ; hgnc_id "HGNC:20376" ; level 2 ; orig_coord_info "chr3,4466976,4467245,-" ; protein_id "ENSP00000272902.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SUMF1--LRRFIP2^ENST00000272902.10" ; transcript_name "SUMF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SUMF1--LRRFIP2 HAVANA mRNA 1005 10918 . + . FI_gene_label "SUMF1^ENSG00000144455.14" ; ID "SUMF1--LRRFIP2^ENST00000272902.10" ; Parent "SUMF1--LRRFIP2^SUMF1^ENSG00000144455.14" ; ccdsid "CCDS2564.1" ; exon_id "ENSE00001939829.1" ; exon_number 1 ; gene_id "SUMF1--LRRFIP2^SUMF1^ENSG00000144455.14" ; gene_name SUMF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090269.6" ; havana_transcript "OTTHUMT00000206591.3" ; hgnc_id "HGNC:20376" ; level 2 ; orig_coord_info "chr3,4466976,4467245,-" ; protein_id "ENSP00000272902.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SUMF1--LRRFIP2^ENST00000272902.10" ; transcript_name "SUMF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SUMF1--LRRFIP2 HAVANA gene 33614 68718 . + . FI_gene_label "LRRFIP2^ENSG00000093167.18" ; ID "SUMF1--LRRFIP2^LRRFIP2^ENSG00000093167.18" ; ccdsid "CCDS2664.1" ; exon_id "ENSE00003635395.1" ; exon_number 2 ; gene_id "SUMF1--LRRFIP2^LRRFIP2^ENSG00000093167.18" ; gene_name LRRFIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130796.34" ; havana_transcript "OTTHUMT00000253335.4" ; hgnc_id "HGNC:6703" ; level 2 ; orig_coord_info "chr3,37148894,37148983,-" ; protein_id "ENSP00000338727.4" ; tag basic MANE_Select CCDS ; transcript_id "SUMF1--LRRFIP2^ENST00000336686.9" ; transcript_name "LRRFIP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SUMF1--LRRFIP2 HAVANA mRNA 33614 68718 . + . FI_gene_label "LRRFIP2^ENSG00000093167.18" ; ID "SUMF1--LRRFIP2^ENST00000336686.9" ; Parent "SUMF1--LRRFIP2^LRRFIP2^ENSG00000093167.18" ; ccdsid "CCDS2664.1" ; exon_id "ENSE00003635395.1" ; exon_number 2 ; gene_id "SUMF1--LRRFIP2^LRRFIP2^ENSG00000093167.18" ; gene_name LRRFIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130796.34" ; havana_transcript "OTTHUMT00000253335.4" ; hgnc_id "HGNC:6703" ; level 2 ; orig_coord_info "chr3,37148894,37148983,-" ; protein_id "ENSP00000338727.4" ; tag basic MANE_Select CCDS ; transcript_id "SUMF1--LRRFIP2^ENST00000336686.9" ; transcript_name "LRRFIP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF2--COLEC10 HAVANA gene 37904 46329 . + . FI_gene_label "COLEC10^ENSG00000184374.3" ; ID "TAF2--COLEC10^COLEC10^ENSG00000184374.3" ; ccdsid "CCDS6327.1" ; exon_id "ENSE00001309494.5" ; exon_number 1 ; gene_id "TAF2--COLEC10^COLEC10^ENSG00000184374.3" ; gene_name COLEC10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164971.2" ; havana_transcript "OTTHUMT00000381225.2" ; hgnc_id "HGNC:2220" ; level 2 ; orig_coord_info "chr8,119067282,119067429,+" ; protein_id "ENSP00000332723.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF2--COLEC10^ENST00000332843.3" ; transcript_name "COLEC10-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF2--COLEC10 HAVANA mRNA 37904 46329 . + . FI_gene_label "COLEC10^ENSG00000184374.3" ; ID "TAF2--COLEC10^ENST00000332843.3" ; Parent "TAF2--COLEC10^COLEC10^ENSG00000184374.3" ; ccdsid "CCDS6327.1" ; exon_id "ENSE00001309494.5" ; exon_number 1 ; gene_id "TAF2--COLEC10^COLEC10^ENSG00000184374.3" ; gene_name COLEC10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164971.2" ; havana_transcript "OTTHUMT00000381225.2" ; hgnc_id "HGNC:2220" ; level 2 ; orig_coord_info "chr8,119067282,119067429,+" ; protein_id "ENSP00000332723.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF2--COLEC10^ENST00000332843.3" ; transcript_name "COLEC10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF2--COLEC10 HAVANA gene 1001 32668 . + . FI_gene_label "TAF2^ENSG00000064313.12" ; ID "TAF2--COLEC10^TAF2^ENSG00000064313.12" ; ccdsid "CCDS34937.1" ; exon_id "ENSE00002108893.2" ; exon_number 1 ; gene_id "TAF2--COLEC10^TAF2^ENSG00000064313.12" ; gene_name TAF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165009.5" ; havana_transcript "OTTHUMT00000381436.2" ; hgnc_id "HGNC:11536" ; level 2 ; orig_coord_info "chr8,119832482,119832564,-" ; protein_id "ENSP00000367406.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF2--COLEC10^ENST00000378164.7" ; transcript_name "TAF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF2--COLEC10 HAVANA mRNA 1001 32668 . + . FI_gene_label "TAF2^ENSG00000064313.12" ; ID "TAF2--COLEC10^ENST00000378164.7" ; Parent "TAF2--COLEC10^TAF2^ENSG00000064313.12" ; ccdsid "CCDS34937.1" ; exon_id "ENSE00002108893.2" ; exon_number 1 ; gene_id "TAF2--COLEC10^TAF2^ENSG00000064313.12" ; gene_name TAF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165009.5" ; havana_transcript "OTTHUMT00000381436.2" ; hgnc_id "HGNC:11536" ; level 2 ; orig_coord_info "chr8,119832482,119832564,-" ; protein_id "ENSP00000367406.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAF2--COLEC10^ENST00000378164.7" ; transcript_name "TAF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TATDN1--GSDMB HAVANA gene 1374 15569 . + . FI_gene_label "TATDN1^ENSG00000147687.19" ; ID "TATDN1--GSDMB^TATDN1^ENSG00000147687.19" ; ccdsid "CCDS6351.1" ; exon_id "ENSE00002108222.2" ; exon_number 1 ; gene_id "TATDN1--GSDMB^TATDN1^ENSG00000147687.19" ; gene_name TATDN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165068.5" ; havana_transcript "OTTHUMT00000381655.2" ; hgnc_id "HGNC:24220" ; level 2 ; orig_coord_info "chr8,124539025,124539046,-" ; protein_id "ENSP00000276692.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TATDN1--GSDMB^ENST00000276692.11" ; transcript_name "TATDN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TATDN1--GSDMB HAVANA mRNA 1374 15569 . + . FI_gene_label "TATDN1^ENSG00000147687.19" ; ID "TATDN1--GSDMB^ENST00000276692.11" ; Parent "TATDN1--GSDMB^TATDN1^ENSG00000147687.19" ; ccdsid "CCDS6351.1" ; exon_id "ENSE00002108222.2" ; exon_number 1 ; gene_id "TATDN1--GSDMB^TATDN1^ENSG00000147687.19" ; gene_name TATDN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165068.5" ; havana_transcript "OTTHUMT00000381655.2" ; hgnc_id "HGNC:24220" ; level 2 ; orig_coord_info "chr8,124539025,124539046,-" ; protein_id "ENSP00000276692.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TATDN1--GSDMB^ENST00000276692.11" ; transcript_name "TATDN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TATDN1--GSDMB HAVANA gene 19847 28857 . + . FI_gene_label "GSDMB^ENSG00000073605.18" ; ID "TATDN1--GSDMB^GSDMB^ENSG00000073605.18" ; ccdsid "CCDS42313.1" ; exon_id "ENSE00001432962.1" ; exon_number 2 ; gene_id "TATDN1--GSDMB^GSDMB^ENSG00000073605.18" ; gene_name GSDMB ; gene_type protein_coding ; havana_gene "OTTHUMG00000133248.6" ; havana_transcript "OTTHUMT00000256994.1" ; hgnc_id "HGNC:23690" ; level 2 ; orig_coord_info "chr17,39917082,39917316,-" ; protein_id "ENSP00000312584.7" ; tag basic CCDS ; transcript_id "TATDN1--GSDMB^ENST00000309481.11" ; transcript_name "GSDMB-201" ; transcript_support_level 2 ; transcript_type protein_coding
TATDN1--GSDMB HAVANA mRNA 19847 28857 . + . FI_gene_label "GSDMB^ENSG00000073605.18" ; ID "TATDN1--GSDMB^ENST00000309481.11" ; Parent "TATDN1--GSDMB^GSDMB^ENSG00000073605.18" ; ccdsid "CCDS42313.1" ; exon_id "ENSE00001432962.1" ; exon_number 2 ; gene_id "TATDN1--GSDMB^GSDMB^ENSG00000073605.18" ; gene_name GSDMB ; gene_type protein_coding ; havana_gene "OTTHUMG00000133248.6" ; havana_transcript "OTTHUMT00000256994.1" ; hgnc_id "HGNC:23690" ; level 2 ; orig_coord_info "chr17,39917082,39917316,-" ; protein_id "ENSP00000312584.7" ; tag basic CCDS ; transcript_id "TATDN1--GSDMB^ENST00000309481.11" ; transcript_name "GSDMB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TBC1D31--ZNF704 HAVANA gene 2424 30937 . + . FI_gene_label "TBC1D31^ENSG00000156787.17" ; ID "TBC1D31--ZNF704^TBC1D31^ENSG00000156787.17" ; ccdsid "CCDS6338.1" ; exon_id "ENSE00002732245.2" ; exon_number 1 ; gene_id "TBC1D31--ZNF704^TBC1D31^ENSG00000156787.17" ; gene_name TBC1D31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165081.9" ; havana_transcript "OTTHUMT00000381721.2" ; hgnc_id "HGNC:30888" ; level 2 ; orig_coord_info "chr8,123072770,123072846,+" ; protein_id "ENSP00000287380.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D31--ZNF704^ENST00000287380.6" ; transcript_name "TBC1D31-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D31--ZNF704 HAVANA mRNA 2424 30937 . + . FI_gene_label "TBC1D31^ENSG00000156787.17" ; ID "TBC1D31--ZNF704^ENST00000287380.6" ; Parent "TBC1D31--ZNF704^TBC1D31^ENSG00000156787.17" ; ccdsid "CCDS6338.1" ; exon_id "ENSE00002732245.2" ; exon_number 1 ; gene_id "TBC1D31--ZNF704^TBC1D31^ENSG00000156787.17" ; gene_name TBC1D31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165081.9" ; havana_transcript "OTTHUMT00000381721.2" ; hgnc_id "HGNC:30888" ; level 2 ; orig_coord_info "chr8,123072770,123072846,+" ; protein_id "ENSP00000287380.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D31--ZNF704^ENST00000287380.6" ; transcript_name "TBC1D31-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D31--ZNF704 HAVANA gene 33938 61604 . + . FI_gene_label "ZNF704^ENSG00000164684.13" ; ID "TBC1D31--ZNF704^ZNF704^ENSG00000164684.13" ; ccdsid "CCDS34913.1" ; exon_id "ENSE00001798298.1" ; exon_number 2 ; gene_id "TBC1D31--ZNF704^ZNF704^ENSG00000164684.13" ; gene_name ZNF704 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164733.3" ; havana_transcript "OTTHUMT00000379964.2" ; hgnc_id "HGNC:32291" ; level 2 ; orig_coord_info "chr8,80821374,80821594,-" ; protein_id "ENSP00000331462.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D31--ZNF704^ENST00000327835.7" ; transcript_name "ZNF704-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D31--ZNF704 HAVANA mRNA 33938 61604 . + . FI_gene_label "ZNF704^ENSG00000164684.13" ; ID "TBC1D31--ZNF704^ENST00000327835.7" ; Parent "TBC1D31--ZNF704^ZNF704^ENSG00000164684.13" ; ccdsid "CCDS34913.1" ; exon_id "ENSE00001798298.1" ; exon_number 2 ; gene_id "TBC1D31--ZNF704^ZNF704^ENSG00000164684.13" ; gene_name ZNF704 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164733.3" ; havana_transcript "OTTHUMT00000379964.2" ; hgnc_id "HGNC:32291" ; level 2 ; orig_coord_info "chr8,80821374,80821594,-" ; protein_id "ENSP00000331462.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D31--ZNF704^ENST00000327835.7" ; transcript_name "ZNF704-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AL669831.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^ENST00000326270.13" ; Parent "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAM1--AC004083.1 HAVANA gene 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--AC004083.1^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--AC004083.1^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--AC004083.1^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAM1--AC004083.1 HAVANA mRNA 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--AC004083.1^ENST00000262213.7" ; Parent "TRAM1--AC004083.1^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--AC004083.1^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--AC004083.1^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAM1--REXO1L3P HAVANA gene 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--REXO1L3P^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--REXO1L3P^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--REXO1L3P^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAM1--REXO1L3P HAVANA mRNA 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--REXO1L3P^ENST00000262213.7" ; Parent "TRAM1--REXO1L3P^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--REXO1L3P^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--REXO1L3P^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAM1--REXO1L8P HAVANA gene 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--REXO1L8P^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--REXO1L8P^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--REXO1L8P^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAM1--REXO1L8P HAVANA mRNA 1001 13322 . + . FI_gene_label "TRAM1^ENSG00000067167.8" ; ID "TRAM1--REXO1L8P^ENST00000262213.7" ; Parent "TRAM1--REXO1L8P^TRAM1^ENSG00000067167.8" ; ccdsid "CCDS6207.1" ; exon_id "ENSE00000819638.3" ; exon_number 1 ; gene_id "TRAM1--REXO1L8P^TRAM1^ENSG00000067167.8" ; gene_name TRAM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164428.3" ; havana_transcript "OTTHUMT00000378738.2" ; hgnc_id "HGNC:20568" ; level 2 ; orig_coord_info "chr8,70608077,70608199,-" ; protein_id "ENSP00000262213.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAM1--REXO1L8P^ENST00000262213.7" ; transcript_name "TRAM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIO--FBXL7 ENSEMBL gene 78165 83124 . + . FI_gene_label "FBXL7^ENSG00000183580.10" ; ID "TRIO--FBXL7^FBXL7^ENSG00000183580.10" ; exon_id "ENSE00003717418.1" ; exon_number 1 ; gene_id "TRIO--FBXL7^FBXL7^ENSG00000183580.10" ; gene_name FBXL7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161798.2" ; hgnc_id "HGNC:13604" ; level 3 ; orig_coord_info "chr5,15927889,15928501,+" ; protein_id "ENSP00000329632.8" ; tag basic ; transcript_id "TRIO--FBXL7^ENST00000329673.8" ; transcript_name "FBXL7-201" ; transcript_support_level 2 ; transcript_type protein_coding
TRIO--FBXL7 ENSEMBL mRNA 78165 83124 . + . FI_gene_label "FBXL7^ENSG00000183580.10" ; ID "TRIO--FBXL7^ENST00000329673.8" ; Parent "TRIO--FBXL7^FBXL7^ENSG00000183580.10" ; exon_id "ENSE00003717418.1" ; exon_number 1 ; gene_id "TRIO--FBXL7^FBXL7^ENSG00000183580.10" ; gene_name FBXL7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161798.2" ; hgnc_id "HGNC:13604" ; level 3 ; orig_coord_info "chr5,15927889,15928501,+" ; protein_id "ENSP00000329632.8" ; tag basic ; transcript_id "TRIO--FBXL7^ENST00000329673.8" ; transcript_name "FBXL7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TRIO--FBXL7 HAVANA gene 58236 70144 . + . FI_gene_label "TRIO^ENSG00000038382.20" ; ID "TRIO--FBXL7^TRIO^ENSG00000038382.20" ; exon_id "ENSE00001491808.3" ; exon_number 1 ; gene_id "TRIO--FBXL7^TRIO^ENSG00000038382.20" ; gene_name TRIO ; gene_type protein_coding ; havana_gene "OTTHUMG00000131057.11" ; havana_transcript "OTTHUMT00000366424.1" ; hgnc_id "HGNC:12303" ; level 2 ; orig_coord_info "chr5,14488941,14489069,+" ; protein_id "ENSP00000339291.5" ; tag basic ; transcript_id "TRIO--FBXL7^ENST00000344135.5" ; transcript_name "TRIO-201" ; transcript_support_level 2 ; transcript_type protein_coding
TRIO--FBXL7 HAVANA mRNA 58236 70144 . + . FI_gene_label "TRIO^ENSG00000038382.20" ; ID "TRIO--FBXL7^ENST00000344135.5" ; Parent "TRIO--FBXL7^TRIO^ENSG00000038382.20" ; exon_id "ENSE00001491808.3" ; exon_number 1 ; gene_id "TRIO--FBXL7^TRIO^ENSG00000038382.20" ; gene_name TRIO ; gene_type protein_coding ; havana_gene "OTTHUMG00000131057.11" ; havana_transcript "OTTHUMT00000366424.1" ; hgnc_id "HGNC:12303" ; level 2 ; orig_coord_info "chr5,14488941,14489069,+" ; protein_id "ENSP00000339291.5" ; tag basic ; transcript_id "TRIO--FBXL7^ENST00000344135.5" ; transcript_name "TRIO-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VSTM2L--CTNNBL1 HAVANA gene 9028 33852 . + . FI_gene_label "CTNNBL1^ENSG00000132792.19" ; ID "VSTM2L--CTNNBL1^CTNNBL1^ENSG00000132792.19" ; ccdsid "CCDS13298.1" ; exon_id "ENSE00001827583.2" ; exon_number 1 ; gene_id "VSTM2L--CTNNBL1^CTNNBL1^ENSG00000132792.19" ; gene_name CTNNBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032428.6" ; havana_transcript "OTTHUMT00000079125.2" ; hgnc_id "HGNC:15879" ; level 2 ; orig_coord_info "chr20,37694123,37694152,+" ; protein_id "ENSP00000355050.6" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSTM2L--CTNNBL1^ENST00000361383.11" ; transcript_name "CTNNBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VSTM2L--CTNNBL1 HAVANA mRNA 9028 33852 . + . FI_gene_label "CTNNBL1^ENSG00000132792.19" ; ID "VSTM2L--CTNNBL1^ENST00000361383.11" ; Parent "VSTM2L--CTNNBL1^CTNNBL1^ENSG00000132792.19" ; ccdsid "CCDS13298.1" ; exon_id "ENSE00001827583.2" ; exon_number 1 ; gene_id "VSTM2L--CTNNBL1^CTNNBL1^ENSG00000132792.19" ; gene_name CTNNBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032428.6" ; havana_transcript "OTTHUMT00000079125.2" ; hgnc_id "HGNC:15879" ; level 2 ; orig_coord_info "chr20,37694123,37694152,+" ; protein_id "ENSP00000355050.6" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "VSTM2L--CTNNBL1^ENST00000361383.11" ; transcript_name "CTNNBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VSTM2L--CTNNBL1 HAVANA gene 1001 5052 . + . FI_gene_label "VSTM2L^ENSG00000132821.12" ; ID "VSTM2L--CTNNBL1^VSTM2L^ENSG00000132821.12" ; exon_id "ENSE00001819285.1" ; exon_number 1 ; gene_id "VSTM2L--CTNNBL1^VSTM2L^ENSG00000132821.12" ; gene_name VSTM2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032430.4" ; havana_transcript "OTTHUMT00000079134.2" ; hgnc_id "HGNC:16096" ; level 2 ; orig_coord_info "chr20,37903351,37903471,+" ; protein_id "ENSP00000362558.4" ; tag basic ; transcript_id "VSTM2L--CTNNBL1^ENST00000373459.4" ; transcript_name "VSTM2L-201" ; transcript_support_level 3 ; transcript_type protein_coding
VSTM2L--CTNNBL1 HAVANA mRNA 1001 5052 . + . FI_gene_label "VSTM2L^ENSG00000132821.12" ; ID "VSTM2L--CTNNBL1^ENST00000373459.4" ; Parent "VSTM2L--CTNNBL1^VSTM2L^ENSG00000132821.12" ; exon_id "ENSE00001819285.1" ; exon_number 1 ; gene_id "VSTM2L--CTNNBL1^VSTM2L^ENSG00000132821.12" ; gene_name VSTM2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032430.4" ; havana_transcript "OTTHUMT00000079134.2" ; hgnc_id "HGNC:16096" ; level 2 ; orig_coord_info "chr20,37903351,37903471,+" ; protein_id "ENSP00000362558.4" ; tag basic ; transcript_id "VSTM2L--CTNNBL1^ENST00000373459.4" ; transcript_name "VSTM2L-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
VTCN1--PIK3CA HAVANA gene 14271 45255 . + . FI_gene_label "PIK3CA^ENSG00000121879.6" ; ID "VTCN1--PIK3CA^PIK3CA^ENSG00000121879.6" ; ccdsid "CCDS43171.1" ; exon_id "ENSE00001139995.2" ; exon_number 2 ; gene_id "VTCN1--PIK3CA^PIK3CA^ENSG00000121879.6" ; gene_name PIK3CA ; gene_type protein_coding ; havana_gene "OTTHUMG00000157311.5" ; havana_transcript "OTTHUMT00000348409.3" ; hgnc_id "HGNC:8975" ; level 1 ; orig_coord_info "chr3,179198826,179199177,+" ; protein_id "ENSP00000263967.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "VTCN1--PIK3CA^ENST00000263967.4" ; transcript_name "PIK3CA-201" ; transcript_support_level 2 ; transcript_type protein_coding
VTCN1--PIK3CA HAVANA mRNA 14271 45255 . + . FI_gene_label "PIK3CA^ENSG00000121879.6" ; ID "VTCN1--PIK3CA^ENST00000263967.4" ; Parent "VTCN1--PIK3CA^PIK3CA^ENSG00000121879.6" ; ccdsid "CCDS43171.1" ; exon_id "ENSE00001139995.2" ; exon_number 2 ; gene_id "VTCN1--PIK3CA^PIK3CA^ENSG00000121879.6" ; gene_name PIK3CA ; gene_type protein_coding ; havana_gene "OTTHUMG00000157311.5" ; havana_transcript "OTTHUMT00000348409.3" ; hgnc_id "HGNC:8975" ; level 1 ; orig_coord_info "chr3,179198826,179199177,+" ; protein_id "ENSP00000263967.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "VTCN1--PIK3CA^ENST00000263967.4" ; transcript_name "PIK3CA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
VTCN1--PIK3CA ENSEMBL gene 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--PIK3CA^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--PIK3CA^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--PIK3CA^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
VTCN1--PIK3CA ENSEMBL mRNA 1001 11026 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "VTCN1--PIK3CA^ENST00000328189.7" ; Parent "VTCN1--PIK3CA^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "VTCN1--PIK3CA^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "VTCN1--PIK3CA^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF56--MTSS1 HAVANA gene 12163 35699 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "ZNF56--MTSS1^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "ZNF56--MTSS1^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "ZNF56--MTSS1^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF56--MTSS1 HAVANA mRNA 12163 35699 . + . FI_gene_label "MTSS1^ENSG00000170873.19" ; ID "ZNF56--MTSS1^ENST00000325064.9" ; Parent "ZNF56--MTSS1^MTSS1^ENSG00000170873.19" ; ccdsid "CCDS64969.1" ; exon_id "ENSE00002313690.1" ; exon_number 1 ; gene_id "ZNF56--MTSS1^MTSS1^ENSG00000170873.19" ; gene_name MTSS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000048189.5" ; havana_transcript "OTTHUMT00000381615.1" ; hgnc_id "HGNC:20443" ; level 2 ; orig_coord_info "chr8,124727884,124727955,-" ; protein_id "ENSP00000322804.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "ZNF56--MTSS1^ENST00000325064.9" ; transcript_name "MTSS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC090946.1--MBNL1 HAVANA gene 1001 2251 . + . FI_gene_label "AC090946.1^ENSG00000286689.1" ; ID "AC090946.1--MBNL1^AC090946.1^ENSG00000286689.1" ; exon_id "ENSE00003866722.1" ; exon_number 1 ; gene_id "AC090946.1--MBNL1^AC090946.1^ENSG00000286689.1" ; gene_name "AC090946.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195861.1" ; havana_transcript "OTTHUMT00000529082.1" ; level 2 ; orig_coord_info "chr3,15970003,15970482,+" ; tag basic TAGENE ; transcript_id "AC090946.1--MBNL1^ENST00000655579.1" ; transcript_name "AC090946.1-201" ; transcript_type lncRNA
AC090946.1--MBNL1 HAVANA RNA 1001 2251 . + . FI_gene_label "AC090946.1^ENSG00000286689.1" ; ID "AC090946.1--MBNL1^ENST00000655579.1" ; Parent "AC090946.1--MBNL1^AC090946.1^ENSG00000286689.1" ; exon_id "ENSE00003866722.1" ; exon_number 1 ; gene_id "AC090946.1--MBNL1^AC090946.1^ENSG00000286689.1" ; gene_name "AC090946.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195861.1" ; havana_transcript "OTTHUMT00000529082.1" ; level 2 ; orig_coord_info "chr3,15970003,15970482,+" ; tag basic TAGENE ; transcript_id "AC090946.1--MBNL1^ENST00000655579.1" ; transcript_name "AC090946.1-201" ; transcript_type lncRNA
L1 and L2 created:
ACOT8--WASH3P HAVANA gene 12699 17642 . + . FI_gene_label "WASH3P^ENSG00000185596.16" ; ID "ACOT8--WASH3P^WASH3P^ENSG00000185596.16" ; exon_id "ENSE00002534869.1" ; exon_number 1 ; gene_id "ACOT8--WASH3P^WASH3P^ENSG00000185596.16" ; gene_name WASH3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172275.2" ; havana_transcript "OTTHUMT00000417607.1" ; hgnc_id "HGNC:24362" ; level 2 ; orig_coord_info "chr15,101961618,101961641,+" ; transcript_id "ACOT8--WASH3P^ENST00000354296.9" ; transcript_name "WASH3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
ACOT8--WASH3P HAVANA RNA 12699 17642 . + . FI_gene_label "WASH3P^ENSG00000185596.16" ; ID "ACOT8--WASH3P^ENST00000354296.9" ; Parent "ACOT8--WASH3P^WASH3P^ENSG00000185596.16" ; exon_id "ENSE00002534869.1" ; exon_number 1 ; gene_id "ACOT8--WASH3P^WASH3P^ENSG00000185596.16" ; gene_name WASH3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172275.2" ; havana_transcript "OTTHUMT00000417607.1" ; hgnc_id "HGNC:24362" ; level 2 ; orig_coord_info "chr15,101961618,101961641,+" ; transcript_id "ACOT8--WASH3P^ENST00000354296.9" ; transcript_name "WASH3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
CSE1L--AL035685.1 HAVANA gene 26809 33859 . + . FI_gene_label "AL035685.1^ENSG00000283529.1" ; ID "CSE1L--AL035685.1^AL035685.1^ENSG00000283529.1" ; exon_id "ENSE00003792475.1" ; exon_number 1 ; gene_id "CSE1L--AL035685.1^AL035685.1^ENSG00000283529.1" ; gene_name "AL035685.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000191701.1" ; havana_transcript "OTTHUMT00000489605.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr20,49318337,49318585,+" ; tag basic ; transcript_id "CSE1L--AL035685.1^ENST00000636663.1" ; transcript_name "AL035685.1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
CSE1L--AL035685.1 HAVANA RNA 26809 33859 . + . FI_gene_label "AL035685.1^ENSG00000283529.1" ; ID "CSE1L--AL035685.1^ENST00000636663.1" ; Parent "CSE1L--AL035685.1^AL035685.1^ENSG00000283529.1" ; exon_id "ENSE00003792475.1" ; exon_number 1 ; gene_id "CSE1L--AL035685.1^AL035685.1^ENSG00000283529.1" ; gene_name "AL035685.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000191701.1" ; havana_transcript "OTTHUMT00000489605.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr20,49318337,49318585,+" ; tag basic ; transcript_id "CSE1L--AL035685.1^ENST00000636663.1" ; transcript_name "AL035685.1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
DSP--AL355499.1 HAVANA gene 39086 53086 . + . FI_gene_label "AL355499.1^ENSG00000232234.4" ; ID "DSP--AL355499.1^AL355499.1^ENSG00000232234.4" ; exon_id "ENSE00003819414.1" ; exon_number 1 ; gene_id "DSP--AL355499.1^AL355499.1^ENSG00000232234.4" ; gene_name "AL355499.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192537.4" ; havana_transcript "OTTHUMT00000039800.2" ; level 2 ; orig_coord_info "chr6,8195576,8195635,+" ; tag basic ; transcript_id "DSP--AL355499.1^ENST00000439891.3" ; transcript_name "AL355499.1-206" ; transcript_support_level 5 ; transcript_type lncRNA
DSP--AL355499.1 HAVANA RNA 39086 53086 . + . FI_gene_label "AL355499.1^ENSG00000232234.4" ; ID "DSP--AL355499.1^ENST00000439891.3" ; Parent "DSP--AL355499.1^AL355499.1^ENSG00000232234.4" ; exon_id "ENSE00003819414.1" ; exon_number 1 ; gene_id "DSP--AL355499.1^AL355499.1^ENSG00000232234.4" ; gene_name "AL355499.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192537.4" ; havana_transcript "OTTHUMT00000039800.2" ; level 2 ; orig_coord_info "chr6,8195576,8195635,+" ; tag basic ; transcript_id "DSP--AL355499.1^ENST00000439891.3" ; transcript_name "AL355499.1-206" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
EIF2B5--AC092941.1 HAVANA gene 14974 16400 . + . FI_gene_label "AC092941.1^ENSG00000225058.1" ; ID "EIF2B5--AC092941.1^AC092941.1^ENSG00000225058.1" ; exon_id "ENSE00001775582.1" ; exon_number 1 ; gene_id "EIF2B5--AC092941.1^AC092941.1^ENSG00000225058.1" ; gene_name "AC092941.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156396.1" ; havana_transcript "OTTHUMT00000344061.1" ; level 1 ; orig_coord_info "chr3,188003901,188003990,-" ; tag basic exp_conf ; transcript_id "EIF2B5--AC092941.1^ENST00000415940.1" ; transcript_name "AC092941.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
EIF2B5--AC092941.1 HAVANA RNA 14974 16400 . + . FI_gene_label "AC092941.1^ENSG00000225058.1" ; ID "EIF2B5--AC092941.1^ENST00000415940.1" ; Parent "EIF2B5--AC092941.1^AC092941.1^ENSG00000225058.1" ; exon_id "ENSE00001775582.1" ; exon_number 1 ; gene_id "EIF2B5--AC092941.1^AC092941.1^ENSG00000225058.1" ; gene_name "AC092941.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156396.1" ; havana_transcript "OTTHUMT00000344061.1" ; level 1 ; orig_coord_info "chr3,188003901,188003990,-" ; tag basic exp_conf ; transcript_id "EIF2B5--AC092941.1^ENST00000415940.1" ; transcript_name "AC092941.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
IQSEC1--AC090946.1 HAVANA gene 36028 37278 . + . FI_gene_label "AC090946.1^ENSG00000286689.1" ; ID "IQSEC1--AC090946.1^AC090946.1^ENSG00000286689.1" ; exon_id "ENSE00003866722.1" ; exon_number 1 ; gene_id "IQSEC1--AC090946.1^AC090946.1^ENSG00000286689.1" ; gene_name "AC090946.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195861.1" ; havana_transcript "OTTHUMT00000529082.1" ; level 2 ; orig_coord_info "chr3,15970003,15970482,+" ; tag basic TAGENE ; transcript_id "IQSEC1--AC090946.1^ENST00000655579.1" ; transcript_name "AC090946.1-201" ; transcript_type lncRNA
IQSEC1--AC090946.1 HAVANA RNA 36028 37278 . + . FI_gene_label "AC090946.1^ENSG00000286689.1" ; ID "IQSEC1--AC090946.1^ENST00000655579.1" ; Parent "IQSEC1--AC090946.1^AC090946.1^ENSG00000286689.1" ; exon_id "ENSE00003866722.1" ; exon_number 1 ; gene_id "IQSEC1--AC090946.1^AC090946.1^ENSG00000286689.1" ; gene_name "AC090946.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195861.1" ; havana_transcript "OTTHUMT00000529082.1" ; level 2 ; orig_coord_info "chr3,15970003,15970482,+" ; tag basic TAGENE ; transcript_id "IQSEC1--AC090946.1^ENST00000655579.1" ; transcript_name "AC090946.1-201" ; transcript_type lncRNA
L1 and L2 created:
MECOM--LMCD1-AS1 HAVANA gene 39829 47178 . + . FI_gene_label "LMCD1-AS1^ENSG00000227110.7" ; ID "MECOM--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; exon_id "ENSE00003887052.1" ; exon_number 1 ; gene_id "MECOM--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; gene_name "LMCD1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154968.2" ; havana_transcript "OTTHUMT00000337845.2" ; hgnc_id "HGNC:44477" ; level 2 ; orig_coord_info "chr3,8501471,8501668,-" ; tag basic TAGENE ; transcript_id "MECOM--LMCD1-AS1^ENST00000420095.2" ; transcript_name "LMCD1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
MECOM--LMCD1-AS1 HAVANA RNA 39829 47178 . + . FI_gene_label "LMCD1-AS1^ENSG00000227110.7" ; ID "MECOM--LMCD1-AS1^ENST00000420095.2" ; Parent "MECOM--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; exon_id "ENSE00003887052.1" ; exon_number 1 ; gene_id "MECOM--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; gene_name "LMCD1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154968.2" ; havana_transcript "OTTHUMT00000337845.2" ; hgnc_id "HGNC:44477" ; level 2 ; orig_coord_info "chr3,8501471,8501668,-" ; tag basic TAGENE ; transcript_id "MECOM--LMCD1-AS1^ENST00000420095.2" ; transcript_name "LMCD1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
MIR4713HG--GLDN HAVANA RNA 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^ENST00000559909.1" ; Parent "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MTSS1--AC034114.2 HAVANA gene 30014 41371 . + . FI_gene_label "AC034114.2^ENSG00000253238.3" ; ID "MTSS1--AC034114.2^AC034114.2^ENSG00000253238.3" ; exon_id "ENSE00002136726.1" ; exon_number 1 ; gene_id "MTSS1--AC034114.2^AC034114.2^ENSG00000253238.3" ; gene_name "AC034114.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164551.12" ; havana_transcript "OTTHUMT00000379180.1" ; level 2 ; orig_coord_info "chr8,80266154,80266232,+" ; transcript_id "MTSS1--AC034114.2^ENST00000522044.1" ; transcript_name "AC034114.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
MTSS1--AC034114.2 HAVANA RNA 30014 41371 . + . FI_gene_label "AC034114.2^ENSG00000253238.3" ; ID "MTSS1--AC034114.2^ENST00000522044.1" ; Parent "MTSS1--AC034114.2^AC034114.2^ENSG00000253238.3" ; exon_id "ENSE00002136726.1" ; exon_number 1 ; gene_id "MTSS1--AC034114.2^AC034114.2^ENSG00000253238.3" ; gene_name "AC034114.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164551.12" ; havana_transcript "OTTHUMT00000379180.1" ; level 2 ; orig_coord_info "chr8,80266154,80266232,+" ; transcript_id "MTSS1--AC034114.2^ENST00000522044.1" ; transcript_name "AC034114.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RARS2--SNX18P25 HAVANA gene 23527 24284 . + . FI_gene_label "SNX18P25^ENSG00000249337.2" ; ID "RARS2--SNX18P25^SNX18P25^ENSG00000249337.2" ; exon_id "ENSE00002053590.2" ; exon_number 1 ; gene_id "RARS2--SNX18P25^SNX18P25^ENSG00000249337.2" ; gene_name SNX18P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000160593.2" ; havana_transcript "OTTHUMT00000361337.2" ; hgnc_id "HGNC:39633" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr4,49588772,49589529,+" ; tag basic ; transcript_id "RARS2--SNX18P25^ENST00000510539.2" ; transcript_name "SNX18P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RARS2--SNX18P25 HAVANA RNA 23527 24284 . + . FI_gene_label "SNX18P25^ENSG00000249337.2" ; ID "RARS2--SNX18P25^ENST00000510539.2" ; Parent "RARS2--SNX18P25^SNX18P25^ENSG00000249337.2" ; exon_id "ENSE00002053590.2" ; exon_number 1 ; gene_id "RARS2--SNX18P25^SNX18P25^ENSG00000249337.2" ; gene_name SNX18P25 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000160593.2" ; havana_transcript "OTTHUMT00000361337.2" ; hgnc_id "HGNC:39633" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr4,49588772,49589529,+" ; tag basic ; transcript_id "RARS2--SNX18P25^ENST00000510539.2" ; transcript_name "SNX18P25-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SERPINB8--FAM157C HAVANA gene 18104 32267 . + . FI_gene_label "FAM157C^ENSG00000260528.5" ; ID "SERPINB8--FAM157C^FAM157C^ENSG00000260528.5" ; exon_id "ENSE00002615273.1" ; exon_number 1 ; gene_id "SERPINB8--FAM157C^FAM157C^ENSG00000260528.5" ; gene_name FAM157C ; gene_type lncRNA ; havana_gene "OTTHUMG00000172848.6" ; havana_transcript "OTTHUMT00000420861.1" ; hgnc_id "HGNC:34081" ; level 2 ; orig_coord_info "chr16,90102271,90102442,+" ; tag basic ; transcript_id "SERPINB8--FAM157C^ENST00000563357.1" ; transcript_name "FAM157C-201" ; transcript_support_level 2 ; transcript_type lncRNA
SERPINB8--FAM157C HAVANA RNA 18104 32267 . + . FI_gene_label "FAM157C^ENSG00000260528.5" ; ID "SERPINB8--FAM157C^ENST00000563357.1" ; Parent "SERPINB8--FAM157C^FAM157C^ENSG00000260528.5" ; exon_id "ENSE00002615273.1" ; exon_number 1 ; gene_id "SERPINB8--FAM157C^FAM157C^ENSG00000260528.5" ; gene_name FAM157C ; gene_type lncRNA ; havana_gene "OTTHUMG00000172848.6" ; havana_transcript "OTTHUMT00000420861.1" ; hgnc_id "HGNC:34081" ; level 2 ; orig_coord_info "chr16,90102271,90102442,+" ; tag basic ; transcript_id "SERPINB8--FAM157C^ENST00000563357.1" ; transcript_name "FAM157C-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SLC45A4--LINC00824 HAVANA gene 31116 33869 . + . FI_gene_label "LINC00824^ENSG00000254275.6" ; ID "SLC45A4--LINC00824^LINC00824^ENSG00000254275.6" ; exon_id "ENSE00002124638.1" ; exon_number 1 ; gene_id "SLC45A4--LINC00824^LINC00824^ENSG00000254275.6" ; gene_name LINC00824 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165050.1" ; havana_transcript "OTTHUMT00000381573.1" ; hgnc_id "HGNC:50281" ; level 2 ; orig_coord_info "chr8,128415366,128415381,-" ; tag dotter_confirmed basic ; transcript_id "SLC45A4--LINC00824^ENST00000517583.1" ; transcript_name "LINC00824-201" ; transcript_support_level 5 ; transcript_type lncRNA
SLC45A4--LINC00824 HAVANA RNA 31116 33869 . + . FI_gene_label "LINC00824^ENSG00000254275.6" ; ID "SLC45A4--LINC00824^ENST00000517583.1" ; Parent "SLC45A4--LINC00824^LINC00824^ENSG00000254275.6" ; exon_id "ENSE00002124638.1" ; exon_number 1 ; gene_id "SLC45A4--LINC00824^LINC00824^ENSG00000254275.6" ; gene_name LINC00824 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165050.1" ; havana_transcript "OTTHUMT00000381573.1" ; hgnc_id "HGNC:50281" ; level 2 ; orig_coord_info "chr8,128415366,128415381,-" ; tag dotter_confirmed basic ; transcript_id "SLC45A4--LINC00824^ENST00000517583.1" ; transcript_name "LINC00824-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TLK2--AL669831.1 HAVANA RNA 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^ENST00000428504.2" ; Parent "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TRAM1--AC004083.1 HAVANA gene 16330 22978 . + . FI_gene_label "AC004083.1^ENSG00000254180.2" ; ID "TRAM1--AC004083.1^AC004083.1^ENSG00000254180.2" ; exon_id "ENSE00002097734.1" ; exon_number 1 ; gene_id "TRAM1--AC004083.1^AC004083.1^ENSG00000254180.2" ; gene_name "AC004083.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163969.2" ; havana_transcript "OTTHUMT00000376590.2" ; level 2 ; orig_coord_info "chr8,90620011,90620070,-" ; tag dotter_confirmed basic TAGENE ; transcript_id "TRAM1--AC004083.1^ENST00000521975.2" ; transcript_name "AC004083.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TRAM1--AC004083.1 HAVANA RNA 16330 22978 . + . FI_gene_label "AC004083.1^ENSG00000254180.2" ; ID "TRAM1--AC004083.1^ENST00000521975.2" ; Parent "TRAM1--AC004083.1^AC004083.1^ENSG00000254180.2" ; exon_id "ENSE00002097734.1" ; exon_number 1 ; gene_id "TRAM1--AC004083.1^AC004083.1^ENSG00000254180.2" ; gene_name "AC004083.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163969.2" ; havana_transcript "OTTHUMT00000376590.2" ; level 2 ; orig_coord_info "chr8,90620011,90620070,-" ; tag dotter_confirmed basic TAGENE ; transcript_id "TRAM1--AC004083.1^ENST00000521975.2" ; transcript_name "AC004083.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TRAM1--REXO1L3P HAVANA gene 16323 18610 . + . FI_gene_label "REXO1L3P^ENSG00000273567.1" ; ID "TRAM1--REXO1L3P^REXO1L3P^ENSG00000273567.1" ; exon_id "ENSE00003725519.1" ; exon_number 1 ; gene_id "TRAM1--REXO1L3P^REXO1L3P^ENSG00000273567.1" ; gene_name REXO1L3P ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185912.4" ; havana_transcript "OTTHUMT00000471696.4" ; hgnc_id "HGNC:32240" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,85658142,85658514,-" ; tag pseudo_consens basic ; transcript_id "TRAM1--REXO1L3P^ENST00000622202.1" ; transcript_name "REXO1L3P-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TRAM1--REXO1L3P HAVANA RNA 16323 18610 . + . FI_gene_label "REXO1L3P^ENSG00000273567.1" ; ID "TRAM1--REXO1L3P^ENST00000622202.1" ; Parent "TRAM1--REXO1L3P^REXO1L3P^ENSG00000273567.1" ; exon_id "ENSE00003725519.1" ; exon_number 1 ; gene_id "TRAM1--REXO1L3P^REXO1L3P^ENSG00000273567.1" ; gene_name REXO1L3P ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185912.4" ; havana_transcript "OTTHUMT00000471696.4" ; hgnc_id "HGNC:32240" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,85658142,85658514,-" ; tag pseudo_consens basic ; transcript_id "TRAM1--REXO1L3P^ENST00000622202.1" ; transcript_name "REXO1L3P-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TRAM1--REXO1L8P HAVANA gene 16323 19219 . + . FI_gene_label "REXO1L8P^ENSG00000270971.2" ; ID "TRAM1--REXO1L8P^REXO1L8P^ENSG00000270971.2" ; exon_id "ENSE00003753676.1" ; exon_number 1 ; gene_id "TRAM1--REXO1L8P^REXO1L8P^ENSG00000270971.2" ; gene_name REXO1L8P ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184830.3" ; havana_transcript "OTTHUMT00000469244.3" ; hgnc_id "HGNC:35429" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,85645941,85646325,-" ; tag pseudo_consens basic ; transcript_id "TRAM1--REXO1L8P^ENST00000604378.2" ; transcript_name "REXO1L8P-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TRAM1--REXO1L8P HAVANA RNA 16323 19219 . + . FI_gene_label "REXO1L8P^ENSG00000270971.2" ; ID "TRAM1--REXO1L8P^ENST00000604378.2" ; Parent "TRAM1--REXO1L8P^REXO1L8P^ENSG00000270971.2" ; exon_id "ENSE00003753676.1" ; exon_number 1 ; gene_id "TRAM1--REXO1L8P^REXO1L8P^ENSG00000270971.2" ; gene_name REXO1L8P ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184830.3" ; havana_transcript "OTTHUMT00000469244.3" ; hgnc_id "HGNC:35429" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,85645941,85646325,-" ; tag pseudo_consens basic ; transcript_id "TRAM1--REXO1L8P^ENST00000604378.2" ; transcript_name "REXO1L8P-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
ZNF56--MTSS1 HAVANA gene 1223 2669 . + . FI_gene_label "ZNF56^ENSG00000267419.2" ; ID "ZNF56--MTSS1^ZNF56^ENSG00000267419.2" ; exon_id "ENSE00002770419.1" ; exon_number 1 ; gene_id "ZNF56--MTSS1^ZNF56^ENSG00000267419.2" ; gene_name ZNF56 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182366.2" ; havana_transcript "OTTHUMT00000460788.1" ; hgnc_id "HGNC:13124" ; level 2 ; orig_coord_info "chr19,19776824,19776994,+" ; transcript_id "ZNF56--MTSS1^ENST00000586924.1" ; transcript_name "ZNF56-201" ; transcript_support_level 2 ; transcript_type retained_intron
ZNF56--MTSS1 HAVANA RNA 1223 2669 . + . FI_gene_label "ZNF56^ENSG00000267419.2" ; ID "ZNF56--MTSS1^ENST00000586924.1" ; Parent "ZNF56--MTSS1^ZNF56^ENSG00000267419.2" ; exon_id "ENSE00002770419.1" ; exon_number 1 ; gene_id "ZNF56--MTSS1^ZNF56^ENSG00000267419.2" ; gene_name ZNF56 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182366.2" ; havana_transcript "OTTHUMT00000460788.1" ; hgnc_id "HGNC:13124" ; level 2 ; orig_coord_info "chr19,19776824,19776994,+" ; transcript_id "ZNF56--MTSS1^ENST00000586924.1" ; transcript_name "ZNF56-201" ; transcript_support_level 2 ; transcript_type retained_intron
1192 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2415 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 90 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed