File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/724e1ffeb969f3cba69583009b662b/.command.out
Size
1.1 KB
Attempt
  AIH curated blacklist: matched 1 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 7
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 7 (100.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 1
  All 1 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 2
  confidence_below_min(low<high): 2
  confidence_below_min(medium<high);aih_curated_blacklist: 1
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  low: 0 pass, 3 fail (total: 3)
  medium: 0 pass, 4 fail (total: 4)
Arriba filter: 7 rows -> 0 PASS; wrote OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2.arriba.fusions.filtered.tsv and OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2.arriba.fusions.filter_summary.txt