#!/bin/bash -euo pipefail
cat LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L005_R1_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L006_R1_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L007_R1_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L008_R1_001.fastq.gz > LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_R1.fastq.gz
cat LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L005_R2_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L006_R2_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L007_R2_001.fastq.gz LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_S51_L008_R2_001.fastq.gz > LungN_FFPE_L03_RNA_01_B23LG7FLT4_1_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS